In Vitro Evaluation of Novel Inhibitors against the NS2B-NS3 Protease of Dengue Fever Virus Type 4
Abstract
:1. Introduction
2. Results and Discussion
2.1. Expression of Active NS2B-NS3pro in P. pastoris
Purification Step | Total Volume (mL) | Total Protein (mg) | Total Activity (U) | Specific Activity (U/mg) | Purification (fold) | Yield (%) |
---|---|---|---|---|---|---|
Crude enzyme | 1850 | 200.2 | 888.5 | 4.4 | 1 | 100 |
10 kDa cut-off | 800 | 77.6 | 807.8 | 10.4 | 2.4 | 90.9 |
Ammonium sulfate precipitation | 31.5 | 9.7 | 567.0 | 58.5 | 13.3 | 63.8 |
DEAE-Sepharose | 5.0 | 1.4 | 83.0 | 59.3 | 13.5 | 9.3 |
2.2. GVSS against NS3pro
2.3. In Vitro Assay for NS2B-NS3pro Potential Inhibiting Activity
Compound | Chemdiv ID | Chemical Structure | Free Binding Energy (kcal·mol−1) | Inhibition a (%) | IC50 (μM) |
---|---|---|---|---|---|
2 | 6049-2540 | −13.2 | 95.2 | 15.6 ± 0.9 | |
5 | E881-0223 | −10.3 | 58.8 | 86.7 ± 3.6 | |
12 | 3011-0208 | −11.3 | 85.2 | 32.2 ± 1.9 | |
14 | G642-2349 | −10.4 | 98.2 | 12.5 ± 0.5 | |
22 | K286-0036 | −11.9 | 91.7 | 3.9 ± 0.6 | |
27 | C090-0497 | −11.3 | 82.5 | 26.4 ± 2.6 | |
29 | F575-0314 | −11.8 | 66.6 | 75.3 ± 1.9 |
3. Experimental
3.1. Preparation of Recombinant DENV4 NS2B-NS3pro
3.2. Virtual Screening
3.3. Inhibition Assay
3.4. Enzyme Kinetics
4. Conclusions
Supplementary Materials
Acknowledgments
Conflicts of Interest
References
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Nguyen, T.T.H.; Lee, S.; Wang, H.-K.; Chen, H.-Y.; Wu, Y.-T.; Lin, S.C.; Kim, D.-W.; Kim, D. In Vitro Evaluation of Novel Inhibitors against the NS2B-NS3 Protease of Dengue Fever Virus Type 4. Molecules 2013, 18, 15600-15612. https://doi.org/10.3390/molecules181215600
Nguyen TTH, Lee S, Wang H-K, Chen H-Y, Wu Y-T, Lin SC, Kim D-W, Kim D. In Vitro Evaluation of Novel Inhibitors against the NS2B-NS3 Protease of Dengue Fever Virus Type 4. Molecules. 2013; 18(12):15600-15612. https://doi.org/10.3390/molecules181215600
Chicago/Turabian StyleNguyen, Thi Thanh Hanh, Sun Lee, Hsi-Kai Wang, Hsin-Yen Chen, Ying-Ta Wu, Simon C. Lin, Do-Won Kim, and Doman Kim. 2013. "In Vitro Evaluation of Novel Inhibitors against the NS2B-NS3 Protease of Dengue Fever Virus Type 4" Molecules 18, no. 12: 15600-15612. https://doi.org/10.3390/molecules181215600
APA StyleNguyen, T. T. H., Lee, S., Wang, H. -K., Chen, H. -Y., Wu, Y. -T., Lin, S. C., Kim, D. -W., & Kim, D. (2013). In Vitro Evaluation of Novel Inhibitors against the NS2B-NS3 Protease of Dengue Fever Virus Type 4. Molecules, 18(12), 15600-15612. https://doi.org/10.3390/molecules181215600