Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients
Abstract
:1. Introduction
2. Materials and Methods
2.1. Subjects
2.2. DNA Preparation
2.3. Statistical Analysis
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Gene Localization | Chromosomal | Gene Name | Total SNPs Studied | Marker (db SNP ID) | Site Polymorphic |
---|---|---|---|---|---|
IL-10 | 1q31 | Interleukin-10 | 3 | rs1800896 | IL-10 −1082 A/G |
rs1800871 | IL-10 −819 C/T | ||||
rs1800872 | IL-10 −592 A/C | ||||
TNF-α | 6p21 | Tumor necrosis factor-alpha | 2 | rs361525 | TNF-α −238 A/G |
rs1800629 | TNF-α −308 A/G | ||||
IFN-γ | 12q15 | Interferon-gamma | 2 | rs2069709 | IFN-γ −179 G/T |
rs2069710 | IFN-γ −155 G/A | ||||
TGF-β | 19q13.2 | Transforming growth factor beta | 2 | rs1800469 | TGF-β −509 T/C |
rs1800470 | TGF-β 29 T/C |
Demographic Features | Takayasu’s Patients | Healthy Controls | p |
---|---|---|---|
Total subjects (n) | |||
Female | 50 | 48 | 0.021 a |
Male | 2 | 12 | |
Age (years) | 28 | 34.7 | 0.158 b |
Medium | (13–52) | (17–51) | |
Hata’s classification (%) | |||
Type I | 9.6 | - | |
Type II | 7.7 | - | |
Type III | 5.7 | - | |
Type IV | 0 | - | |
Type V | 76.9 | - | |
Activity (%) | |||
Yes | 61.5 | - | |
No | 38.5 | - | |
Blood pressure (mmHg ± SD) | |||
Diastolic | 82.93 ± 28.5 | 78.80 ± 9.6 | 0.068 c |
Systolic | 140.34 ± 22.3 | 122.61 ± 17.3 | 0.004 c |
Gene | Genotype | Controls | Patients | p | OR (95% CI) | ||
---|---|---|---|---|---|---|---|
n | % | n | % | ||||
TNF-α-238 | GG | 59 | 98.3 | 49 | 94.2 | 0.335 | 0.271 (0.02–2.74) |
GA | 1 | 1.7 | 3 | 5.8 | 0.339 | 0.283 (0.02–2.76) | |
AA | 0 | 0 | 0 | 0 | - | - | |
Alleles | |||||||
G | 119 | 99.1 | 101 | 97.1 | 0.339 | 0.282 (0.02–2.76) | |
A | 1 | 0.9 | 3 | 2.9 | - | - | |
TNF-α-308 | GG | 51 | 85 | 45 | 86.5 | 0.819 | 1.000(0.40–2.45) |
GA | 9 | 15 | 7 | 13.5 | 0.946 | 0.947 (0.55–1.60) | |
AA | 0 | 0 | 0 | 0 | - | - | |
Alleles | |||||||
G | 111 | 92.5 | 97 | 93.3 | 0.970 | 1012 (0.40–3.18) | |
A | 9 | 7.5 | 7 | 6.7 | - | - | |
TGF-β-509 | TT | 17 | 28.3 | 11 | 21.1 | 0.511 | 0.678 (0.28–1.62) |
TC | 23 | 38.8 | 26 | 50.0 | 0.293 | 1.608 (0.75–3.41) | |
CC | 20 | 33.3 | 15 | 28.8 | 0.759 | 0.810 (0.36–1.81) | |
Alleles | |||||||
T | 57 | 47.5 | 48 | 46.1 | 0.946 | 0.947 (0.55–1.60) | |
C | 63 | 52.5 | 56 | 53.4 | - | - | |
TGF-β 29 | TT | 17 | 28.3 | 13 | 25.0 | 0.854 | 0.843 (0.36–1.95) |
TC | 25 | 41.7 | 27 | 51.9 | 0.370 | 1.512 (0.71–3.19) | |
CC | 18 | 30 | 12 | 23.0 | 0.541 | 0.700 (0.29–1.63) | |
Alleles | |||||||
T | 59 | 49.1 | 53 | 50.9 | 0.893 | 1.07 (0.63–1.81) | |
C | 61 | 50.9 | 51 | 49.1 | - | - | |
IFN-γ-179 | GG | 57 | 95 | 50 | 96.2 | 0.869 | 1.315 (0.21–8.19) |
GT | 3 | 5 | 2 | 3.8 | 0.869 | 0.760 (0.12–4.73) | |
TT | 0 | 0 | 0 | 0 | - | - | |
Alleles | |||||||
G | 117 | 97.5 | 102 | 98.1 | 0.871 | 1.30 (0.21–7.98) | |
T | 3 | 2.5 | 2 | 1.9 | - | - | |
IFN-γ-155 | AA | 60 | 100 | 52 | 100 | - | - |
AG | 0 | 0 | 0 | 0 | - | - | |
GG | 0 | 0 | 0 | 0 | - | - | |
Alleles | - | - | |||||
A | 120 | 100 | 104 | 100 | - | - | |
G | 0 | 0 | 0 | 0 | - | - | |
IL-10-592 | AA | 8 | 13.3 | 5 | 9.6 | 0.751 | 0.691 (0.27–2.62) |
AC | 30 | 50 | 28 | 53.8 | 0.828 | 1.166 (0.55–2.45) | |
CC | 22 | 36.7 | 19 | 36.5 | 0.855 | 0.994 (0.46–1.59) | |
Alleles | |||||||
A | 46 | 38.3 | 38 | 36.5 | 0.890 | 0.926 (0.53–1.59) | |
C | 74 | 61.7 | 66 | 63.5 | - | - | |
IL-10-819 | TT | 8 | 13.3 | 6 | 11.5 | 1.000 | 0.847 (0.27–2.62) |
TC | 27 | 45 | 26 | 50.0 | 0.734 | 1.222 (0.58–2.57) | |
CC | 25 | 41.7 | 20 | 38.5 | 0.879 | 0.875 (0.40–1.86) | |
Alleles | |||||||
T | 43 | 35.8 | 38 | 36.5 | 0.976 | 1.031 (0.59–1.78) | |
C | 77 | 64.2 | 66 | 63.5 | - | - | |
IL-10-1082 | AA | 32 | 53.3 | 23 | 49.2 | 0.440 | 0.693 (0.32–1.46) |
AG | 26 | 43.3 | 27 | 51.9 | 0.472 | 1.412 (0.66–2.97) | |
GG | 2 | 3.3 | 2 | 3.8 | 0.715 | 1.160 (0.15–8.53) | |
Alleles | |||||||
A | 90 | 75 | 74 | 71.1 | 1.619 | 0.822 (0.45–1.48) | |
G | 30 | 25 | 30 | 28.9 | - | - |
IL-10 | Haplotype Frequency | TNF-α | Haplotype Frequency | TGF-β | Haplotype Frequency |
---|---|---|---|---|---|
CCA | 0.357 | GG | 0.911 | TC | 0.467 |
ATA | 0.352 | GA | 0.071 | CT | 0.435 |
CCG | 0.259 | AG | 0.018 | CC | 0.065 |
ACA | 0.023 | TT | 0.033 |
IL-10 −592 | pC | OR (CI 95%) | IL-10 −819 | pC | OR (CI 95%) | IL-10 −1082 | pC | OR (CI 95%) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
A | C | - | - | T | C | - | - | A | G | - | - | |
Our study | 36.5 | 63.5 | - | - | 36.5 | 63.5 | - | - | 71.1 | 28.9 | - | - |
Korean [33] | 78.6 | 21.4 | 0.0001 | 0.20 (0.13–0.31) | 73.3 | 26.7 | 0.0001 | 0.20 (0.13–0.32) | 93.9 | 6.1 | 0.0001 | 0.16 (0.05–0.27) |
Tunisian [34,35,36,37,38,39] | 20.0 | 80 | 0.0003 | 96.9 (29.7–31.0) | 19.2 | 80.8 | 0.0002 | 2.12 (1.53–3.80) | 44.7 | 55.3 | 0.0001 | 3.10 (1.94–4.96) |
German [40] | 28.2 | 71.8 | 0.1060 | 7.30 (2.20–24.1) | 28.2 | 71.8 | 0.1065 | 1.46 (0.94–2.25) | 54.7 | 45.3 | 0.0019 | 2.08 (1.32–3.20) |
TNF-α −238 | TNF-α −308 | |||||||||||
G | A | pC | OR (CI 95%) | G | A | pC | OR (CI 95%) | - | - | - | - | |
Our study | 97.1 | 2.9 | - | - | 93.7 | 6.7 | - | - | - | - | - | - |
Indian [41] | 91.6 | 8.3 | 0.1117 | 3.06 (0.87–10.6) | 93.0 | 7.0 | 0.223 | 2.53 (0.71–9.02) | - | - | - | - |
Taiwanese [42] | 82.1 | 17.8 | 0.0004 | 7.30 (2.20–24.1) | 98.6 | 1.4 | 0.612 | 0.46 (0.09–2.34) | - | - | - | - |
Iranian [43] | 25.8 | 74.2 | 0.0001 | 96.9 (29.7–31.6) | 92.8 | 7.2 | 0.213 | 2.62 (0.72–9.52) | - | - | - | - |
TGF-β −509 | TGF-β −29 | |||||||||||
T | C | pC | OR (CI 95%) | T | C | pC | OR (CI 95%) | - | - | - | - | |
Our study | 46.1 | 56.4 | - | - | 50.9 | 49.1 | 0.0010 | - | - | - | - | - |
Iranian [44] | 39.8 | 60.2 | 0.3471 | 1.26 (0.80–0.09) | 31.0 | 69.0 | 0.8081 | 2.31 (1.42–3.76) | - | - | - | - |
Chinese [45] | - | - | - | - | 48.9 | 51.1 | 0.9125 | 1.08 (0.69–1.70) | - | - | - | - |
Caucasian [46] | - | - | - | - | 49.8 | 50.2 | - | 1.04 (0.68–1.61) | - | - | - | - |
Taiwanese [47] | 44.5 | 55.4 | 0.9726 | 0.97 (0.61–1.56) | - | - | - | - | - | - | - | - |
Spanish [48] | 66.5 | 33.5 | 0.0001 | 0.43 (0.28–0.65) | - | - | - | - | - | - | - | - |
IFN-γ −179 | IFN-γ −155 | |||||||||||
G | T | pC | OR (CI 95%) | A | G | pC | - | - | - | - | ||
Our study | 98.1 | 1.9 | - | - | 100 | 0.0 | - | - | - | - | - | - |
Chinese [49] | - | - | - | - | 100 | 0.0 | - | - | - | - | - | - |
Sudanese [50] | 99.5 | 0.5 | 0.5383 | 0.24 (0.02–1.74) | - | - | - | - | - | - | - | - |
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Soto, M.E.; Huesca-Gómez, C.; Torres-Paz, Y.; Fuentevilla-Álvarez, G.; Gamboa, R. Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients. Int. J. Environ. Res. Public Health 2019, 16, 4863. https://doi.org/10.3390/ijerph16234863
Soto ME, Huesca-Gómez C, Torres-Paz Y, Fuentevilla-Álvarez G, Gamboa R. Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients. International Journal of Environmental Research and Public Health. 2019; 16(23):4863. https://doi.org/10.3390/ijerph16234863
Chicago/Turabian StyleSoto, María Elena, Claudia Huesca-Gómez, Yazmín Torres-Paz, Giovanny Fuentevilla-Álvarez, and Ricardo Gamboa. 2019. "Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients" International Journal of Environmental Research and Public Health 16, no. 23: 4863. https://doi.org/10.3390/ijerph16234863
APA StyleSoto, M. E., Huesca-Gómez, C., Torres-Paz, Y., Fuentevilla-Álvarez, G., & Gamboa, R. (2019). Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients. International Journal of Environmental Research and Public Health, 16(23), 4863. https://doi.org/10.3390/ijerph16234863