Review of Importance of Weather and Environmental Variables in Agent-Based Arbovirus Models
Abstract
:1. Introduction
1.1. Background Concepts
1.1.1. Dengue Fever
1.1.2. Agent-Based Modeling
2. Materials and Methods
2.1. PubMed Search
2.2. SCOPUS Search
2.3. Research4Life Search
2.4. Google Scholar Search
2.5. Inclusion Criteria
- i.
- Those that investigated the effects of climatic factors or environmental factors (for example rainfall, temperature, humidity, landscape type, mosquito habitats) on the incidence, transmission, and modeling of infectious diseases.
- ii.
- Those related to arboviruses, especially in Africa.
- iii.
- Those that involved modeling of arbovirus disease.
- iv.
- Studies that were published in any year.
- v.
- Articles that were published in English.
3. Results
3.1. Temperature
3.2. Precipitation
3.3. Humidity
3.4. Environmental Factors
4. Discussion
- (i)
- Through the review, it has been identified that ABM in Africa is mostly implemented for other diseases such as malaria, Ebola, rift valley fever, west Nile virus, tuberculosis, human immunodeficiency virus, and other dominant diseases rather than dengue disease [62,63,64,65,66,67,68]. This shows that there is a lack of sufficient literature on ABM for dengue disease in Africa and thus points to a need for further research on dengue and ABM and simulation in the African context.
- (ii)
- Dengue modeling in ABM is extensively conducted in non-African countries, and although extensively researched in these non-African countries, few studies have considered the influence of climatic and environmental factors. The context of non-African countries into which climatic and environmental conditions have been incorporated into dengue disease modeling is different from the African context.
- (iii)
- Agent-based model frameworks that have been implemented in the reviewed studies included NetLogo, Repast, AnyLogic, EMOD, MESA, MASON, Mlab, Swarm, StarLogo, and Spark. Other recent and more capable ABM tools such as JADE, GAMA, WALK, MARS, and Vigueras were not found in the reviewed works of literature. Advances in technology and computing power have made emerging new tools such as MARS offer a promising output in ABM and simulation. The MARS framework developed for multi-agent research and simulations can simulate a large number of agents’ interactions using a local machine or a cloud-native environment [91,92,93]. The MARS framework allows the implementation of layered architecture and allows spatio-temporal data integration in which raster- and vector-based data can efficiently be handled. A study by Glake et al. [92] identifies that it is important to evaluate the spatio-temporal data model of the MARS framework with real-world cases.
- (iv)
- To the authors’ knowledge, there are no available reviews that have specifically studied and modeled dengue disease and the influence of climatic and environmental factors using the MARS framework for ABM in the SSA context. Therefore, this review is crucial to enlighten a need for more studies on dengue modeling in Tanzania’s context and explore the effects of climatic, environmental, and spatio-temporal factors on dengue disease outbreaks, transmission, and surveillance.
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Appendix A
Appendix B
Appendix C
Serial # | Author, Article Type, Diseases Studied | Climatic Factor Temperature, Rainfall/Precipitation, Humidity/Relative Humidity) | Environmental Factors | The Modeling Approach Used (Agent-Based, Compartmental Models, Machine Learning, Time Series, etc.) | Research Settings (Africa, Global, Country-Specific, etc.) | Study Objective and Results |
---|---|---|---|---|---|---|
1. | Wearing et al. [69], Review paper, Dengue and chikungunya. | Effects of humidity, temperature, and rainfall on egg diapause and adult survival. | Vector density/ population dynamics, urbanization, availability of man-made containers, vegetation index. | Review of different models: process-based models, statistical models, mathematical models. | Global | The study observed that when a suitable mosquito vector (Ae. Albopictus/Aegypti) coupled with suitable conditions for their survival and transmission was required for the occurrence of a mosquito-borne virus in a population. The study also revealed that the virus was introduced from external sources and conditions amenable to its transmission. |
2. | Talaga et al. [24], Experimental. Paper, Ae. Aegypti. | Daily precipitation, air temperature, wind, and relative humidity. | Artificial water containers (such as CDC ovitraps, and car tires), natural water containers (such as native tank bromeliads, dry stamps of bamboo), size of aquatic habitat, and an abundance of Ae. Aegypti immatures. | Multi-model inference approach. | French Guiana (Kourou which is a small Neotropical), October 2013–October 2014. | The relative influence of biotic and abiotic parameters on the immature population of Ae. Aegypti was explored using four different types of water containers and three urbanized sites. The study found that artificial water containers, size of aquatic habitat, amount of precipitation, temperature, and relative humidity positively influenced the number of Ae. Aegypti immatures. The study presented co-existence of Ae. Aegypti with predators and competitors on the abundance of immatures. |
3. | Center [72], Annual Meeting Report, Female and male Ae. Aegypti, Malaria parasites. | Temperature (low 19 °C and high 30 °C). | 288 Vegetation zones, 93 urban zones, breeding spots, 50 households. | ABM | Key West, Florida with an area of approximately 30,000 m2 with around 50 households. | An ABM coupled with a geographic information system for identifying zones with resources necessary for the survival of both male and female Ae. Aegypti and modeling possible breeding site locations. Results showed that the spatial distribution of the vegetation zones, urban zones, and breeding spots together with the temperature, constrained the population of Ae. Aegypti to a mean high of around 2000 during the fall season and around 600 in the late winter season. |
Tropical climate, weather. | Demographics data. | ABM (EMOD framework). | SSA | EMOD is a proprietary epidemiological modeling software package that is used to determine the best combination of interventions that will eventually eradicate the disease. EMOD is a human, mosquito, and parasite modeling program that takes mosquito, weather, demographic, and parasite parameters as input. | ||
4. | Ingabire and Kimura [63], Journal Article, Malaria (Anopheles gambaie). | Temperature (minimum 10 °C and maximum 29 °C), humidity (30–97%), rainfall. | N/A | Mathematical SIR/IR model. | Rwanda meteorology data for 2017 was used. | The research focused on climate effects on the sensitivity of a reproduction rate, death rate, and infection rate, focusing on the life cycle of mosquitoes based on the change in temperature and humidity. Mosquito reproduction increased when humidity was more than 80%. Thus, the high birth rate during hot and high humidity season could accelerate the increase in mosquitoes and enhance the spread of infection. Simulation with real data showed that the number of mosquitoes and the number of patients changed exponentially was mainly caused by humidity change. |
5. | Anders [73,83,84], Ph.D. Thesis, Journal articles, Dengue. | Temperature, rainfall, humidity. | Breeding sites, mosquito density, human population density, water storage needs, and practices. | Mathematical modeling. | Clinically diagnosed dengue cases that were admitted between 1996 and 2009 in three hospitals in Ho Chi Minh City, Southern Vietnam. | The study sought to characterizethe distribution of dengue fever as well as the factors that influence individual and population-level infection risk and disease outcome. Heterogeneity in dengue incidence in space and time is studied. Dengue is found to be sensitive to climatic conditions, which influence virus replication, development, and vector survival. Non-climatic variables such as environmental changes, population growth and human movement, work hand in hand with the climatic variables. |
6. | Liu [25,97,98], Ph.D. Thesis, Journal articles Dengue, Zika. | Temperature (daily, min, max, average), precipitation, relative humidity. | N/A | Multivariate Exponentially Weighted Moving Average (MEWMA) model with a forward feature selection (FFS) algorithm (MEWMA-FFS) framework, machine learning. | Detection of large dengue outbreaks in San Juan-Puerto Rico 2004–2017, Iquitos-Peru 2004–2013, Mexico country 2004–2013. | The study focused on two aspects of emerging and re-emerging infectious disease surveillance systems, with the goal of developing a method for detecting emerging and re-emerging outbreaks as early and accurately as possible, and the study has assessed the tradeoff between the complexity of the model and prediction reliability. The results showed that in Mexico, a subset of the climate-relevance time series model was the best option for early detection of large dengue outbreaks, as was the case in San Juan, where the climate system’s performance was more robust across cross-validation and out-of-sample testing periods. In Iquitos Peru, due to its location, experienced a tropical rainforest climate that lacks a distinct dry season demonstrating that climate was not a good predictor for large dengue outbreaks. |
7. | Deza-Cruz [70], Ph.D. Thesis, Dengue, chikungunya, Zika. | Humidity, temperature, rainfall, wind speed. | Household (water supply, air-conditioning, intact mosquito screens, construction materials, number of residents in the house, number of rooms in the house), mosquito larval habitat (Trash collection, Pools water, Storage water, Debris around house, Plant pots). | Machine learning. | University students at St. Kitts and Nevis between September 2014–May and 2015. | The study found that arbovirus transmission was associated with climatic variables connected to seasonality, which are temperature and rainfall. Humidity and temperature had a positive influence on disease transmission, rainfall had a dual effect (much rain caused a flushing effect, and moderate rain had a positive effect). At the mean temperature of 26 °C and 29 °C large number of mosquitoes were captured, while the number declined at 31 °C. |
8. | Trewin [32,33,99], Ph.D. Thesis, Journal Articles, Ae. Aegypti. | Temperature, rainfall, the humidity of the water in the rainwater tanks and the buckets. | Rainwater tanks, buckets. | ABM (Repast Simphony 2.4.0) | Datasets from Brisbane city council 2012, Queensland government 2017 and Australian Bureau of Statistics 2011. | The model aimed at understanding the implications of mosquito spread between rainwater tanks and identifying risk areas in Brisbane. The number of rainwater tanks in the landscape was principally responsible for the risk. |
9. | Tourre et al. [65], Journal article, Malaria. | Temperature (minimum, maximum), rainfall, relative humidity. | N/A | Impact model to evaluate the influence of climate conditions on malaria risk. | Nouna region in northern Burkina Faso. Rainfall, temperature, and relative humidity data for the period of 1983–2011 were used. | Climate impact model for malaria risk. Total rainfall for three months was found to be a confounding factor for the malaria vector density. It was discovered that there is a substantial relationship between risk for malaria and low-frequency rainfall variability related to the Atlantic Multi-decadal Oscillation (AMO). |
10. | Borges et al. [74], Conference paper, Dengue (Ae. Aegypti pupal productivity). | N/A | Type of container. | ABM using NetLogo. | The model is simulated 1500 times each simulated 100 days. | ABM for evaluating the Pupal Productivity of Ae. Aegypti in containers. The model took into account the pupae production capability of each container in which the mosquitoes laid eggs. The model results were compared to the simulation’s average percentage of pupae per container and the percentage of container productivity defined in Brito-Arduino 2014. |
11. | Mukhtar et al. [66], Journal Article, Malaria (Anopheles gambiae). | Temperature, rainfall. | N/A | Mathematical models. | Two regions in South Sudan. | Climate-driven dynamics model was used to evaluate the impact of rainfall and temperature on the dynamics of the mosquito population in a specific region of South Sudan. Daily temperatures ranged 20 °C to 35°C and rainfall ranged 17 mm to 20 mm were ideal for mosquito progression which facilitated malaria spread. Thus, the warmer temperature might lead to disease intensification. |
12. | Rumisha et al. [67], Journal Article, Malaria (Anopheles funestus, Anopheles gambiae, Anopheles arabiensis). | Rainfall, temperature. | N/A | Bayesian spatio-temporal binomial and zero-inflated negative binomial regression models, Machine learning model. | Data are collected for three years by Demographic Surveillance System (DSS) in Rufiji Tanzania. | The study aimed to assess spatial-temporal variation and heterogeneity of malaria transmission in the Rufiji DSS site using a large geo-referenced biweekly entomological dataset collected over three years (October 2001–September 2004) and rigorous Bayesian geostatistical models. Results depicted temporal and seasonal variation in entomological inoculation rate along the study period and study area. |
13. | Kang and Aldstadt [26], Journal Article, Dengue. | N/A | Mosquito habitats, the spatial configuration of buildings (model environment had 4 schools, 20 workplaces and 895 houses). | ABM using AnyLogic. | A portion of Kamphaeng Phet Province (KPP), Thailand. Parts of a registered residents dataset of KPP in 2009 were used. | The study sought to shed light on the significance of specifying building spatial configurations and mosquito habitats. The experiments’ findings revealed a significant influence on human residential and mosquito population patterns. |
14. | Maneerat and Daudé [75], Journal Article, Dengue (Ae. Aegypti female mosquito). | Daily time, hourly temperature and daily rainfall. | Urban landscape. | ABM-Model of Mosquito Aedes (MOMA). | Hauz Rani is a neighborhood in south Delhi (India). Meteorological data of June 2008 is used for performing the simulations. | A behavioral model MOMA of the Ae. Aegypti mosquito aimed to study the effects of factors such as breeding site density, human density, and topology at a neighborhood level on the dynamics of mosquito population. MOMA investigated mosquito population dynamics in a variety of urban settings. The findings revealed a link between human density, urban topology, and adult mosquito flight. |
15. | Dommar et al. [71], Journal Article, Chikungunya. | Precipitation. | N/A | ABM | An agent-based model, 2 years (28 March 2005–12 February 2006) daily precipitation data for La Réunion. | The researchers created an ABM to investigate the spatiotemporal heterogeneity of an infectious vector-borne disease outbreak. The impact of precipitation-dependent vector populations and the structure of the underlying network topology on epidemiological dynamics was investigated using a model. Results indicated that precipitation was the dominant factor influencing the spatio-temporal transmission. |
16. | Mulyani et al. [76], Journal Article, Dengue. | Temperature, humidity. | N/A | ABM-NetLogo. | Data and information from the national meteorology, climatology and geophysics agency were used. Community health data of Bogor, a region in Dramaga for two periods, January–June 2015 and July–December 2015 were used. | The paper has focused on the simulation behavior of the agent, agent interactions, and agent-environment interactions. Temperature and humidity variables have been used. Results showed that with optimal parameters of temperature and humidity the percentage of infected humans increased as well as mosquito count increased. With low parameters, the percentage of infected humans was steady or did not happen, while the number of mosquitoes decreased. Meanwhile, with fluctuated parameter values, the infection of humans and mosquitoes also fluctuated. |
17. | Deng et al. [77], Conference Paper, Dengue. | Wind direction | Landscape roughness, population, and land use type. | ABM developed with VB6.0 | Virtual environment. | The spreading mechanism of dengue is explained through agent-agent and agent-environment interactions. |
18. | Mahmood et al. [14], Book Chapter, Dengue. | Temperature, rainfall, humidity. | Water bodies, Mosquito density. | ABM using AnyLogic university edition. | Dengue outbreak data from Islamabad city in Pakistan, 2013. | Results showed that dengue transmission was dependent on temperature, when temperature increased, the biting rate of Ae. Aegypti increased which resulted in increased dengue cases. |
19. | Rodríguez [78], Ph.D. Thesis, Dengue. | Temperature, precipitation. | Socio-economic, demographic variables. | Dengue Fever ABM (DFABM) was developed using the Java programming language and open-source MASON simulator, a multi-threaded agent-based simulation platform. | Datasets on monthly reported dengue cases, weather predictors (temperature and precipitation), socio-economic and demographics measures of the population of Central Valley of Costa Rica from 1993 to 2008. | The spread of dengue fever in ABM was simulated using GIS in an urban setting while also taking into account individual interactions in a geospatial context. The variables of temperature, precipitation, socioeconomic status, and demographics were examined. The results showed that high temperatures with heavy precipitation affected the greatest proportion of reported dengue cases. In general, high temperatures, poor housing conditions, and male predominance during warm seasonal rainy periods created ideal conditions for mosquito outbreaks and, as a result, occurrences and rates of dengue cases. |
20. | Colón-González et al. [68], Journal Article, Malaria. | Air temperature, rainfall. | Urbanization, rural districts, socioeconomic indicators. | Time series cross-validation algorithm. | Malaria incidences in Rwanda and Uganda from 2002 to 2011. | The study looked at the short-term effects of rainfall, air temperature, and socioeconomic indicators on malaria incidence. It emphasized the importance of using climatic information in the analysis of malaria surveillance data and demonstrated the potential for the development of climate-informed malaria early warning systems. |
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Pascoe, L.; Clemen, T.; Bradshaw, K.; Nyambo, D. Review of Importance of Weather and Environmental Variables in Agent-Based Arbovirus Models. Int. J. Environ. Res. Public Health 2022, 19, 15578. https://doi.org/10.3390/ijerph192315578
Pascoe L, Clemen T, Bradshaw K, Nyambo D. Review of Importance of Weather and Environmental Variables in Agent-Based Arbovirus Models. International Journal of Environmental Research and Public Health. 2022; 19(23):15578. https://doi.org/10.3390/ijerph192315578
Chicago/Turabian StylePascoe, Luba, Thomas Clemen, Karen Bradshaw, and Devotha Nyambo. 2022. "Review of Importance of Weather and Environmental Variables in Agent-Based Arbovirus Models" International Journal of Environmental Research and Public Health 19, no. 23: 15578. https://doi.org/10.3390/ijerph192315578
APA StylePascoe, L., Clemen, T., Bradshaw, K., & Nyambo, D. (2022). Review of Importance of Weather and Environmental Variables in Agent-Based Arbovirus Models. International Journal of Environmental Research and Public Health, 19(23), 15578. https://doi.org/10.3390/ijerph192315578