Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia?
Abstract
:1. Introduction
2. Materials and Methods
2.1. Ethics
2.2. Sample Collection
2.3. Avian Influenza Virus and Avian Paramyxovirus Isolation Using Chicken Embryos
2.4. RNA Extraction, Reverse Transcription, and Real-Time PCR
2.4.1. Avian Influenza Virus Detection
2.4.2. Avian Paramyxovirus Detection
2.4.3. Avian Coronavirus Detection and Fragment Sequencing
2.5. Phylogenetic Analysis
3. Results
3.1. Virus Detection
3.2. Phylogenetic Analysis of Coronaviruses
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Number of Samples | Single Infection Positives | Co-Infection Positives | Total Number of Infected Individuals and %Age | |||||
---|---|---|---|---|---|---|---|---|---|
Avian Influenza (AIV) | Avian Coronavirus (ACoV) | Avian Paramyxovirus (APMV) | AIV + ACoV | AIV + APMV | APMV + ACoV | AIV + ACoV + APMV | |||
Common Teal (Anas crecca) | 180 | 20 | 8 | 13 | 7 | 1 | 2 | - | 51 (28.3%) |
Garganey (Anas querquedula) | 37 | 3 | 1 | 1 | - | - | - | - | 5 (13.5%) |
Mallard (Anas platyrhynchos) | 47 | 3 | 1 | 6 | - | - | - | - | 10 (2.2%) |
Northern Shoveler (Anas clypeata) | 40 | 2 | 2 | - | - | - | - | - | 4 (10%) |
Baikal Teal (Anas formosa) | 38 | 1 | 3 | 7 | - | - | - | - | 11 (28.9%) |
Northern Pintail (Anas acuta) | 89 | 5 | 2 | 1 | 1 | - | 2 | 1 | 12 (13.5%) |
Gadwall (Anas strepera) | 81 | 1 | 5 | 4 | - | - | 1 | - | 11 (13.6%) |
Wigeon (Anas penelope) | 27 | 2 | 1 | - | - | - | - | - | 3 (11.1%) |
Common Pochard (Aythya ferina) | 40 | - | 1 | 1 | - | - | - | - | 2 (5%) |
Red-crested Pochard (Netta rufina) | 11 | - | - | - | - | - | - | - | 0 |
Tufted Duck (Aythya fuligula) | 7 | - | 1 | - | - | - | - | - | 1 (14.2%) |
Goldeneye (Bucephala clangula) | 9 | - | - | - | - | - | - | - | 0 |
Novosibirsk Region sampling site | 389 | 27 | 12 | 17 | 5 | 0 | 1 | 0 | 62 (15.9%) |
Sakhalin Island sampling site | 217 | 10 | 13 | 16 | 3 | 1 | 4 | 1 | 48 (22.1%) |
Total | 606 | 37 (6.1%) | 25 (4.1%) | 33 (5.4%) | 8 (1.3%) | 1 (0.2%) | 5 (0.8%) | 1 (0.2%) | 110 (16.6%) |
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Sharshov, K.; Dubovitskiy, N.; Derko, A.; Loginova, A.; Kolotygin, I.; Zhirov, D.; Sobolev, I.; Kurskaya, O.; Alekseev, A.; Druzyaka, A.; et al. Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? Viruses 2023, 15, 1121. https://doi.org/10.3390/v15051121
Sharshov K, Dubovitskiy N, Derko A, Loginova A, Kolotygin I, Zhirov D, Sobolev I, Kurskaya O, Alekseev A, Druzyaka A, et al. Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? Viruses. 2023; 15(5):1121. https://doi.org/10.3390/v15051121
Chicago/Turabian StyleSharshov, Kirill, Nikita Dubovitskiy, Anastasiya Derko, Arina Loginova, Ilya Kolotygin, Dmitry Zhirov, Ivan Sobolev, Olga Kurskaya, Alexander Alekseev, Alexey Druzyaka, and et al. 2023. "Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia?" Viruses 15, no. 5: 1121. https://doi.org/10.3390/v15051121
APA StyleSharshov, K., Dubovitskiy, N., Derko, A., Loginova, A., Kolotygin, I., Zhirov, D., Sobolev, I., Kurskaya, O., Alekseev, A., Druzyaka, A., Ktitorov, P., Kulikova, O., He, G., Wang, Z., Bi, Y., & Shestopalov, A. (2023). Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia? Viruses, 15(5), 1121. https://doi.org/10.3390/v15051121