A Comparison of Regression Techniques for Estimation of Above-Ground Winter Wheat Biomass Using Near-Surface Spectroscopy
Abstract
:1. Introduction
- (1)
- VIs were used to train regression models, which were validated to select best VI input (Section 4.1).
- (2)
- The noise immunities of these techniques were compared by simulating remote-sensing errors by adding white Gaussian noise (Section 4.2).
- (3)
- The stability of these techniques was examined by using samples of varying sizes and different sampling methods for modeling and validation (Section 4.3).
- (4)
- Leave-one-out cross validation was used to evaluate the accuracy of the AGB estimation of these techniques (Section 4.4).
2. Materials
2.1. Study Area
2.2. Measurement of Data
2.2.1. Measurements of Winter Wheat Canopy Reflectance
2.2.2. Measurements of Winter Wheat Chlorophyll and Above-Ground Biomass
3. Methods
3.1. Regression Techniques
3.1.1. Machine Learning Techniques
3.1.2. Conventional Regression Techniques
3.2. Selection of Vegetation Indexes
3.3. Noise Simulation
3.4. Modeling Parameters and Sampling Methods
3.5. Precision Evaluation
4. Results
4.1. Selection of Vegetation Indexes
4.2. Test with White Gaussian Noise
4.3. Stability Test
4.4. Estimation Accuracy with Leave One Sampling
5. Analysis and Discussion
5.1. Analysis and Selection of Vegetation Indexes
5.2. Analysis of Noise Immunity
5.3. Analysis of Stability and Prediction Performance
6. Conclusions
- (1)
- Machine learning is the correct technique for tackling the multi-collinearity problem. ANN, BBRT and RF are almost unaffected by the multi-collinearity problem (Figure 6a,b,g), while MLR and PCR could not solve it.
- (2)
- Machine learning techniques are much more immune to noise than conventional regression techniques. In terms of noise immunity, the techniques are ranked as follows (Figure 7): RF > SVM >DT > BBRT >ANN > PCR > PLSR > MLR. Thus, RF may be suitable for work that requires repeated observations via remote sensing.
- (3)
- The growth-period random sampling method performed better in stability tests. PLSR and MLR perform well in all stability tests (Figure 8 and Figure 9 and Table 6 and Table 7); these techniques and the sampling method may be suitable for work in which only a few samples are available for high-accuracy and stability estimation modeling.
- (4)
- This study demonstrated the potential application of VIs, machine learning and conventional regression techniques in estimating winter wheat biomass. The experimental results indicated that PLSR, MLR, and RF may be suitable for work that requires high-accuracy estimation models.
Acknowledgments
Author Contributions
Conflicts of Interest
Appendix A
Component | 54VIs | 40VIs | 30VIs | 20VIs | 15VIs | 10VIs | 5VIs |
---|---|---|---|---|---|---|---|
1 | 75.891 | 70.822 | 65.584 | 62.495 | 65.402 | 60.494 | 68.135 |
2 | 85.003 | 82.513 | 80.511 | 81.348 | 87.255 | 89.711 | 89.136 |
3 | 92.211 | 91.435 | 91.553 | 92.157 | 94.391 | 94.269 | 97.232 |
4 | 95.228 | 94.586 | 94.757 | 94.774 | 96.541 | 97.199 | 99.927 |
5 | 97.350 | 97.109 | 97.179 | 97.235 | 98.056 | 98.596 | 100.000 |
6 | 98.149 | 98.025 | 98.226 | 98.246 | 99.039 | 99.514 | - |
7 | 98.706 | 98.683 | 98.841 | 98.817 | 99.483 | 99.887 | - |
8 | 99.217 | 99.137 | 99.242 | 99.306 | 99.779 | 99.956 | - |
9 | 99.425 | 99.391 | 99.551 | 99.662 | 99.881 | 99.985 | - |
10 | 99.614 | 99.633 | 99.696 | 99.824 | 99.940 | 100.000 | - |
11 | 99.726 | 99.746 | 99.801 | 99.889 | 99.965 | - | - |
12 | 99.817 | 99.829 | 99.870 | 99.927 | 99.986 | - | - |
13 | 99.872 | 99.885 | 99.903 | 99.958 | 99.994 | - | - |
14 | 99.902 | 99.914 | 99.931 | 99.974 | 100.000 | - | - |
15 | 99.927 | 99.933 | 99.951 | 99.988 | 100.000 | - | - |
16 | 99.942 | 99.950 | 99.967 | 99.994 | - | - | - |
17 | 99.956 | 99.963 | 99.979 | 99.998 | - | - | - |
18 | 99.966 | 99.975 | 99.985 | 100.000 | - | - | - |
19 | 99.974 | 99.984 | 99.989 | 100.000 | - | - | - |
20 | 99.980 | 99.989 | 99.994 | 100.000 | - | - | - |
21 | 99.985 | 99.992 | 99.996 | - | - | - | - |
22 | 99.988 | 99.994 | 99.998 | - | - | - | - |
23 | 99.991 | 99.996 | 99.998 | - | - | - | - |
24 | 99.993 | 99.997 | 99.999 | - | - | - | - |
25 | 99.994 | 99.998 | 100.000 | - | - | - | - |
26 | 99.996 | 99.999 | 100.000 | - | - | - | - |
27 | 99.996 | 99.999 | 100.000 | - | - | - | - |
28 | 99.997 | 99.999 | 100.000 | - | - | - | - |
29 | 99.998 | 100.000 | 100.000 | - | - | - | - |
30 | 99.998 | 100.000 | 100.000 | - | - | - | - |
31 | 99.999 | 100.000 | - | - | - | - | - |
32 | 99.999 | 100.000 | - | - | - | - | - |
33 | 99.999 | 100.000 | - | - | - | - | - |
34 | 99.999 | 100.000 | - | - | - | - | - |
35 | 100.000 | 100.000 | - | - | - | - | - |
36 | 100.000 | 100.000 | - | - | - | - | - |
37 | 100.000 | 100.000 | - | - | - | - | - |
38 | 100.000 | 100.000 | - | - | - | - | - |
39 | 100.000 | 100.000 | - | - | - | - | - |
40 | 100.000 | 100.000 | - | - | - | - | - |
41 | 100.000 | - | - | - | - | - | - |
42 | 100.000 | - | - | - | - | - | - |
43 | 100.000 | - | - | - | - | - | - |
44 | 100.000 | - | - | - | - | - | - |
45 | 100.000 | - | - | - | - | - | - |
46 | 100.000 | - | - | - | - | - | - |
47 | 100.000 | - | - | - | - | - | - |
48 | 100.000 | - | - | - | - | - | - |
49 | 100.000 | - | - | - | - | - | - |
50 | 100.000 | - | - | - | - | - | - |
51 | 100.000 | - | - | - | - | - | - |
52 | 100.000 | - | - | - | - | - | - |
53 | 100.000 | - | - | - | - | - | - |
54 | 100.000 | - | - | - | - | - | - |
VI | 54VIs | VI | 40VIs | VI | 30VIs | VI | 20VIs | VI | 15VIs | VI | 10VIs | VI | 5VIs |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 121.3 | 1 | 84.0 | 1 | 46.6 | 1 | 35.0 | 1 | 20.7 | 1 | 13.7 | 1 | 7.1 |
2 | 793.8 | 2 | 400.9 | 2 | 323.2 | 2 | 28.3 | 2 | 7.2 | 2 | 6.0 | 2 | 3.3 |
3 | 1118.0 | 3 | 615.0 | 3 | 511.4 | 3 | 317.0 | 3 | 177.2 | 3 | 143.8 | 3 | 121.2 |
4 | 492.3 | 4 | 399.1 | 4 | 346.3 | 4 | 203.3 | 4 | 173.3 | 4 | 94.1 | 4 | 3.5 |
5 | 2673.3 | 5 | 2015.7 | 5 | 1492.1 | 5 | 471.6 | 5 | 258.9 | 5 | 215.0 | 5 | 150.6 |
6 | 16.2 | 6 | 14.0 | 6 | 13.9 | 6 | 11.7 | 6 | 9.1 | 6 | 6.5 | - | - |
7 | 1122.8 | 7 | 1526.1 | 7 | 1190.1 | 7 | 395.0 | 7 | 326.8 | 7 | 19.9 | - | - |
8 | 2441.3 | 8 | 1548.6 | 8 | 1290.8 | 8 | 1023.6 | 8 | 779.8 | 8 | 287.1 | - | - |
9 | 172.7 | 9 | 114.8 | 9 | 79.4 | 9 | 41.8 | 9 | 32.8 | 9 | 7.7 | - | - |
11 | 2138.9 | 11 | 1271.3 | 11 | 828.0 | 11 | 497.9 | 11 | 438.6 | 10 | 408.9 | - | - |
12 | 1637.2 | 12 | 1188.4 | 12 | 1133.6 | 12 | 805.6 | 12 | 616.8 | - | - | - | - |
13 | 358.1 | 13 | 1227.3 | 13 | 956.0 | 13 | 86.9 | 13 | 29.4 | - | - | - | - |
14 | 175.4 | 14 | 156.0 | 14 | 148.3 | 14 | 111.3 | 14 | 72.1 | - | - | - | - |
15 | 3285.7 | 15 | 3332.0 | 15 | 3899.8 | 15 | 1486.7 | 15 | 146.8 | - | - | - | - |
16 | 191.9 | 16 | 101.7 | 16 | 85.5 | 16 | 39.2 | - | - | - | - | - | - |
17 | 1130.6 | 17 | 1128.6 | 17 | 918.1 | 17 | 23.0 | - | - | - | - | - | - |
18 | 156.2 | 18 | 118.5 | 18 | 79.0 | 18 | 18.7 | - | - | - | - | - | - |
21 | 6258.6 | 21 | 3884.6 | 21 | 886.0 | 20 | 1280.1 | - | - | - | - | - | - |
22 | 663.8 | 22 | 572.1 | 22 | 470.4 | - | - | - | - | - | - | - | - |
24 | 996.9 | 24 | 706.2 | 24 | 207.5 | - | - | - | - | - | - | - | - |
25 | 3304.2 | 26 | 8495.2 | 26 | 2382.6 | - | - | - | - | - | - | - | - |
28 | 5845.4 | 27 | 2114.8 | 27 | 7627.7 | - | - | - | - | - | - | - | - |
30 | 1939.9 | 28 | 3010.1 | 28 | 1554.9 | - | - | - | - | - | - | - | - |
32 | 8499.5 | 30 | 1287.1 | 30 | 2371.2 | - | - | - | - | - | - | - | - |
34 | 3063.2 | 32 | 6092.3 | 32 | 177.4 | - | - | - | - | - | - | - | - |
37 | 59.0 | 37 | 42.0 | - | - | - | - | - | - | - | - | - | |
38 | 2705.9 | 38 | 148.6 | - | - | - | - | - | - | - | - | - | - |
41 | 4203.8 | 40 | 4259.2 | - | - | - | - | - | - | - | - | - | - |
45 | 4723.4 | - | - | - | - | - | - | - | - | - | - | - | - |
46 | 2086.8 | - | - | - | - | - | - | - | - | - | - | - | - |
50 | 4010.9 | - | - | - | - | - | - | - | - | - | - | - | - |
51 | 1151.1 | - | - | - | - | - | - | - | - | - | - | - | - |
52 | 4666.7 | - | - | - | - | - | - | - | - | - | - | - | - |
54 | 3874.4 | - | - | - | - | - | - | - | - | - | - | - | - |
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Period | Sample | Min (t/ha) | Max (t/ha) | Mean (t/ha) | Standard Deviation (t/ha) | Coefficient of Variation (%) |
---|---|---|---|---|---|---|
Jointing | 48 | 1.201 | 4.526 | 2.569 | 0.685 | 26.664 |
Flag | 48 | 2.194 | 8.266 | 5.114 | 1.468 | 28.706 |
Flowering | 48 | 3.419 | 12.737 | 7.790 | 1.960 | 25.160 |
Grain filling | 48 | 5.456 | 17.599 | 10.993 | 2.793 | 25.407 |
VIs | Equation | Reference | VIs | Equation | Reference |
---|---|---|---|---|---|
ATSAVI | a (R800 − a R670 − b)/[(a R800 + R670 − ab + X(1 + a2)], where X = 0.08, a = 1.22, and b = 0.03 | [41] | MND680 | (R800 − R680)/(R800 + R680 − 2R445) | [42] |
EVI | 2.5(RNIR – RRed)/(RNIR + 6RRed − 7.5RBlue + 1) | [43] | MND705 | (R750 − R705)/(R750 + R705 − 2R445) | [42] |
EVI2 | 2.5(RNIR − RRed)/(RNIR + 2.4RRed + 1) | [44] | MSR705 | (R750 − R445)/(R705 − R445) | [42] |
GI | R554/R677 | [45] | NPCI | (R680 − R430)/(R680 + R430) | [46] |
LAIDI | R1250/R1050 | [47] | NPQI | (R415 − R435)/(R415 + R435) | [48] |
MSAVI | 0.5[2R800 + 1 − ((2R800 + 1)2 − 8(R800 − R670))1/2] | [49] | PBI | R810/R560 | [50] |
MSR | (R800/R670 − 1)/(R800/R670 + 1)1/2 | [51] | PRI | (R531 − R570)/(R531 + R570) | [52] |
MTVI1 | 1.2[1.2(R800 − R550) − 2.5(R670 − R550)] | [53] | PSSR | R800/R500 | [54] |
MTVI2 | {1.5[1.2(R800 − R550) − 2.5(R670 − R550)]}/ {(2R800 + 1)2 − [6R800 − 5(R670)1/2] − 0.5}1/2 | [53] | RARS | R760/R500 | [55] |
NDVI | (RNIR − RRed)/(RNIR + RRed) | [56] | RGR | RRed/RGreen | [57] |
OSAVI | 1.16(R800 − R670)/(R800 + R670 + 0.16) | [58] | SIPI | (R800 − R445)/(R800 − R680) | [59] |
PSND | (R800 − R470)/(R800 + R470) | [54] | TVI | 0.5[120(R750 − R550) − 200(R670 − R550)] | [16] |
PVIhyp | (R1148 – a R807 − b)/(1 + a2)1/2, where a = 1.17 and b = 3.37 | [12] | CAI | 0.5(R2020 + R2220) − R2100 | [60] |
RDVI | (R800 − R670)/(R800 + R670)1/2 | [61] | NDLI | [log(1/R1754) − log(1/R1680)] /[log(1/R1754) + log(1/R1680)] | [62] |
SLAIDI | S(R1050 − R1250)/(R1050 + R1250), where S = 5 | [47] | NDNI | [log(1/R1510) − log(1/R1680)] /[log(1/R1510) + log(1/R1680)] | [62] |
SPVI | 0.4[3.7(R800 − R670) − 1.2|R530 − R670|] | [63] | DSWI | (R802 + R547)/(R1657 + R682) | [13] |
TCARI | 3[(R700 − R670) − 0.2(R700 − R550)(R700/R670)] | [64] | LWVI1 | (R1094 − R893)/(R1094 + R893) | [13] |
SR | RNIR /RRed | [65] | LWVI2 | (R1094 − R1205)/(R1094 + R1205) | [13] |
VARIgreen | (RGreen − RRed)/(RGreen + RRed) | [66] | MSI | R1600/R819 | [67] |
WDRVI | (0.1 RNIR − RRed)/(0.1 RNIR + RRed) | [68] | NDII | (R819 − R1600)/(R819 + R1600) | [69] |
ARI | (R550)−1 − (R700)−1 | [70] | NDWI | (R860 − R1240)/(R860 + R1240) | [71] |
BGI | R450/R550 | [45] | RVIhyp | R1088/R1148 | [12] |
BRI | R450/R690 | [45] | SIWSI | (R860 − R1640)/(R860 + R1640) | [72] |
LCI | (R850 − R710)/(R850 + R680) | [15] | SRWI | R860/R1240 | [73] |
MCARI | [(R701 − R671) − 0.2(R701 − R549)]/(R701/R671) | [74] | WI | R900/R970 | [75] |
MCARI1 | 1.2[2.5(R800 − R670) − 1.3(R800 − R550)] | [53] | PSRI | (R680 − R500)/R750 | [76] |
MCARI2 | {1.5[2.5(R800 − R670) − 1.3(R800 − R550)]} /{(2R800 + 1)2 − [6R800 − 5(R670)1/2] − 0.5}1/2 | [53] | RVSI | [(R712 + R752)/2] − R732 | [77] |
Method | ANN | RF | SVM | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Parameters | Hidden layer 1 | Hidden layer 2 | SL | ntree | SL | mtry | SL | c | SL | g | SL |
Min value | 1 | 1 | 1 | 0 | 20 | 1 | 1 | −10 | 0.5 | −10 | 0.5 |
Max value | 20 | 20 | 2000 | 10 | 10 | 10 |
Number | VI | r | Number | VI | r | Number | VI | r |
---|---|---|---|---|---|---|---|---|
1 | NPQI | 0.757 ** | 19 | MCARI1 | 0.226 ** | 37 | NDLI | 0.106 n.s. |
2 | BGI | 0.555 ** | 20 | MTVI1 | 0.226 ** | 38 | PSSR | 0.102 n.s. |
3 | BRI | 0.519 ** | 21 | MND680 | 0.193 ** | 39 | ATSAVI | 0.092 n.s. |
4 | RVIhyp | 0.490 ** | 22 | TCARI | 0.188 ** | 40 | OSAVI | 0.088 n.s. |
5 | NPCI | 0.474 ** | 23 | EVI2 | 0.182 * | 41 | MND705 | 0.086 n.s. |
6 | CAI | 0.442 ** | 24 | PSND | 0.180 * | 42 | RARS | 0.079 n.s. |
7 | PVIhyp | 0.370 ** | 25 | MSAVI | 0.180 * | 43 | SIWSI | 0.075 n.s. |
8 | LWVI2 | 0.352 ** | 26 | TVI | 0.177 * | 44 | NDWI | 0.075 n.s. |
9 | LWVI1 | 0.337 ** | 27 | GI | 0.176 * | 45 | PBI | 0.067 n.s. |
10 | SLAIDI | 0.304 ** | 28 | PRI | 0.176 * | 46 | MSR705 | 0.061 n.s. |
11 | SRWI | 0.300 ** | 29 | VARIgreen | 0.165 * | 47 | NDVI | 0.039 n.s. |
12 | LAIDI | 0.397 ** | 30 | SIPI | 0.157 * | 48 | LCI | 0.034 n.s. |
13 | RVSI | 0.299 ** | 31 | MCARI2 | 0.149 * | 49 | MSR | 0.032 n.s. |
14 | WI | 0.260 ** | 32 | PSRI | 0.149 * | 50 | WDRVI | 0.031 n.s. |
15 | SPVI | 0.251 ** | 33 | RDVI | 0.146 * | 51 | SR | 0.029 n.s. |
16 | ARI | 0.241 ** | 34 | RGR | 0.142 * | 52 | MSI | 0.029 n.s. |
17 | MCARI | 0.237 ** | 35 | EVI | 0.149 * | 53 | DSWI | 0.027 n.s. |
18 | NDNI | 0.228 ** | 36 | MTVI2 | 0.121 * | 54 | NDII | 0.012 n.s. |
Technique | ANN | BBRT | DT | MLR | PLSR | PCR | RF | SVM |
---|---|---|---|---|---|---|---|---|
Number of input VIs | 30 | 5 | 5 | 20 | 15 | 5 | 30 | 30 |
Technique | ∇R2 | ∇RMSE (t/ha) | ∇MAE (t/ha) | ||||||
---|---|---|---|---|---|---|---|---|---|
1/3 | 1/2 | 2/3 | 1/3 | 1/2 | 2/3 | 1/3 | 1/2 | 2/3 | |
ANN | 0.17 * | 0.11 | 0.19 * | 0.45 | 0.59 | 0.65 | 0.25 | 0.69 | 0.52 |
MLR | 0.06 | 0.01 | 0.08 | 0.21 | 0.02 | 0.10 | 0.11 | 0.03 | 0.10 |
DT | 0.18* | 0.18* | 0.31 * | 1.12 * | 0.83 * | 0.66 | 0.56 | 0.70 | 0.91 * |
BBRT | 0.23 * | 0.19* | 0.31 * | 1.64 * | 1.49 * | 1.68 * | 1.23 * | 1.17 * | 1.23 * |
PLSR | 0.05 | 0.01 | 0.10 | 0.19 | 0.01 | 0.20 | 0.10 | 0.02 | 0.17 |
RF | 0.16* | 0.14 | 0.24 * | 0.85 * | 0.85* | 1.00 * | 0.64 | 0.66 | 0.76 |
SVM | 0.02 | 0.09 | 0.19 * | 0.14 | 0.30 | 0.43 | 0.06 | 0.38 | 0.41 |
PCR | 0.06 | 0.04 | 0.17 * | 0.07 | 0.14 | 0.26 | 0.10 | 0.11 | 0.26 |
Technique | ∇R2 | ∇RMSE (t/ha) | ∇MAE (t/ha) | ||||||
---|---|---|---|---|---|---|---|---|---|
1/3 | 1/2 | 2/3 | 1/3 | 1/2 | 2/3 | 1/3 | 1/2 | 2/3 | |
ANN | 0.22 * | 0.07 | 0.03 | 1.20 * | 0.57 | 0.34 | 1.00 * | 0.60 | 0.26 |
MLR | 0.07 | 0.03 | 0.03 | 0.50 | 0.35 | 0.28 | 0.32 | 0.30 | 0.14 |
DT | 0.14 | 0.17 * | 0.17 * | 1.37 * | 1.20 * | 0.50 | 0.78 | 1.00 * | 0.77 |
BBRT | 0.23 * | 0.19 * | 0.20 * | 1.83 * | 1.64 * | 1.56 * | 1.36 * | 1.21 * | 1.23 * |
PLSR | 0.04 | 0.04 | 0.00 | 0.23 | 0.46 | 0.07 | 0.22 | 0.40 | 0.02 |
RF | 0.14 | 0.12 | 0.11 | 1.04 * | 1.03 * | 0.87 * | 0.80 * | 0.77 | 0.70 |
SVM | 0.16 * | 0.07 | 0.05 | 0.81 * | 0.72 | 0.15 | 0.62 | 0.76 | 0.37 |
PCR | 0.01 | 0.06 | 0.01 | 0.11 | 0.47 | 0.06 | 0.10 | 0.36 | 0.01 |
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Yue, J.; Feng, H.; Yang, G.; Li, Z. A Comparison of Regression Techniques for Estimation of Above-Ground Winter Wheat Biomass Using Near-Surface Spectroscopy. Remote Sens. 2018, 10, 66. https://doi.org/10.3390/rs10010066
Yue J, Feng H, Yang G, Li Z. A Comparison of Regression Techniques for Estimation of Above-Ground Winter Wheat Biomass Using Near-Surface Spectroscopy. Remote Sensing. 2018; 10(1):66. https://doi.org/10.3390/rs10010066
Chicago/Turabian StyleYue, Jibo, Haikuan Feng, Guijun Yang, and Zhenhai Li. 2018. "A Comparison of Regression Techniques for Estimation of Above-Ground Winter Wheat Biomass Using Near-Surface Spectroscopy" Remote Sensing 10, no. 1: 66. https://doi.org/10.3390/rs10010066
APA StyleYue, J., Feng, H., Yang, G., & Li, Z. (2018). A Comparison of Regression Techniques for Estimation of Above-Ground Winter Wheat Biomass Using Near-Surface Spectroscopy. Remote Sensing, 10(1), 66. https://doi.org/10.3390/rs10010066