Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population
Abstract
:1. Introduction
2. Materials and Methods
2.1. Subjects
2.2. Ethical Approval
2.3. DNA Extraction and KIR/HLA Genotyping
2.4. Statistical Analysis.
3. Results
3.1. Clinical and Demographic Characteristics
3.2. Frequencies of KIR Genes and HLA Class I Alleles
3.3. KIR Genotypes Profiles
3.4. KIR Combined Genotypes
3.5. KIR/HLA Composed Genotype Frequencies
3.6. Association of the iKIR and aKIR Number with Susceptibility to PsV
4. Discussion
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Gene | HS (n = 108) | SP (n = 100) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
nCF | %CF | GF | nCF | %CF | GF | p | OR | 95% CI | p’ | |
KIR | ||||||||||
2DL1 | 108 | 100.0 | 1.00 | 99 | 99.0 | 0.90 | NS | |||
2DL2 | 59 | 54.6 | 0.33 | 61 | 61.0 | 0.38 | NS | |||
2DL3 | 107 | 99.1 | 0.90 | 96 | 96.0 | 0.80 | NS | |||
3DL1 | 101 | 93.5 | 0.75 | 92 | 92.0 | 0.72 | NS | |||
3DL2 | 106 | 98.1 | 0.86 | 99 | 99.0 | 0.90 | NS | |||
2DS1 | 52 | 48.1 | 0.28 | 52 | 52.0 | 0.31 | NS | |||
2DS2 | 51 | 47.2 | 0.27 | 55 | 55.0 | 0.33 | NS | |||
2DS3 | 24 | 22.2 | 0.12 | 21 | 21.0 | 0.11 | NS | |||
2DS4 | 101 | 93.5 | 0.75 | 92 | 92.0 | 0.72 | NS | |||
2DS5 | 47 | 43.5 | 0.25 | 47 | 47.0 | 0.27 | NS | |||
3DS1 | 60 | 55.6 | 0.33 | 71 | 71.0 | 0.46 | 0.021 | 1.959 | 1.102–3.481 | 0.336 |
2DP1 | 107 | 99.1 | 0.90 | 99 | 99.0 | 0.90 | NS | |||
3DL3 | 108 | 100.0 | 1.00 | 100 | 100.0 | 1.00 | NS | |||
2DL4 | 108 | 100.0 | 1.00 | 100 | 100.0 | 1.00 | NS | |||
2DL5 | 63 | 58.3 | 0.35 | 62 | 62.0 | 0.38 | NS | |||
3DP1 | 108 | 100.0 | 1.00 | 100 | 100.0 | 1.00 | NS | |||
HLA | ||||||||||
C1 | 107 | 99.1 | 0.90 | 98 | 98.0 | 0.86 | NS | |||
C2 | 100 | 92.6 | 0.73 | 90 | 90.9 | 0.70 | NS | |||
A (Bw4) | 39 | 36.1 | 0.20 | 50 | 50.0 | 0.29 | 0.044 | 1.769 | 1.016–3.081 | 0.264 |
Bw4Ile80 | 75 | 69.4 | 0.45 | 54 | 54.0 | 0.32 | 0.023 | 0.517 | 0.293–0.911 | 0.138 |
Bw4Thr80 | 62 | 57.4 | 0.35 | 43 | 43.0 | 0.25 | NS | |||
Bw4* | 98 | 90.7 | 0.70 | 90 | 90.0 | 0.68 | NS |
GENOTYPE | KIR GENES | HS | SP | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G | ID | AA and Bx gene-content genotypes | 3DL1 | 2DL1 | 2DL3 | 2DS4 | 2DL2 | 2DL5 | 3DS1 | 2DS1 | 2DS2 | 2DS3 | 2DS5 | 2DL4 | 3DL2 | 3DL3 | 2DP1 | 3PD1 | n = 108 | n = 100 |
G1* | 1 | AA | 27 | 13 | ||||||||||||||||
G2 | 2 | Bx | 12 | 9 | ||||||||||||||||
G3 | 3 | Bx | 13 | 14 | ||||||||||||||||
G4 | 4 | Bx | 6 | 4 | ||||||||||||||||
G5 | 5 | Bx | 4 | 2 | ||||||||||||||||
G6 | 6 | Bx | 2 | 5 | ||||||||||||||||
G7 | 7 | Bx | 3 | 4 | ||||||||||||||||
G8 | 8 | Bx | 1 | 0 | ||||||||||||||||
G9 | 9 | Bx | 1 | 1 | ||||||||||||||||
G10 | 13 | Bx | 2 | 2 | ||||||||||||||||
G11** | 14 | Bx | 0 | 8 | ||||||||||||||||
G12 | 15 | Bx | 1 | 1 | ||||||||||||||||
G13 | 18 | Bx | 3 | 0 | ||||||||||||||||
G14 | 19 | Bx | 2 | 0 | ||||||||||||||||
G15 | 20 | Bx | 0 | 1 | ||||||||||||||||
G16 | 22 | Bx | 1 | 1 | ||||||||||||||||
G17 | 27 | Bx | 1 | 0 | ||||||||||||||||
G18 | 28 | Bx | 1 | 0 | ||||||||||||||||
G19 | 29 | Bx | 0 | 1 | ||||||||||||||||
G20 | 31 | Bx | 3 | 1 | ||||||||||||||||
G21 | 33 | Bx | 1 | 0 | ||||||||||||||||
G22 | 38 | Bx | 1 | 1 | ||||||||||||||||
G23 | 44 | Bx | 2 | 0 | ||||||||||||||||
G24 | 49 | Bx | 0 | 1 | ||||||||||||||||
G25 | 56 | Bx | 1 | 1 | ||||||||||||||||
G26 | 58 | Bx | 0 | 1 | ||||||||||||||||
G27 | 69 | Bx | 2 | 1 | ||||||||||||||||
G28 | 70 | Bx | 1 | 2 | ||||||||||||||||
G29 | 75 | Bx | 0 | 1 | ||||||||||||||||
G30 | 80 | Bx | 0 | 3 | ||||||||||||||||
G31 | 86 | Bx | 0 | 1 | ||||||||||||||||
G32 | 87 | Bx | 1 | 1 | ||||||||||||||||
G33 | 93 | Bx | 1 | 0 | ||||||||||||||||
G34 | 94 | Bx | 0 | 1 | ||||||||||||||||
G35 | 136 | Bx | 0 | 1 | ||||||||||||||||
G36 | 137 | Bx | 0 | 1 | ||||||||||||||||
G37 | 167 | Bx | 1 | 0 | ||||||||||||||||
G38 | 180 | AA | 0 | 1 | ||||||||||||||||
G39 | 184 | Bx | 1 | 0 | ||||||||||||||||
G40 | 188 | Bx | 1 | 3 | ||||||||||||||||
G41 | 191 | Bx | 1 | 0 | ||||||||||||||||
G42 | 200 | Bx | 0 | 1 | ||||||||||||||||
G43 | 240 | Bx | 0 | 1 | ||||||||||||||||
G44 | 260 | Bx | 1 | 0 | ||||||||||||||||
G45 | 266 | Bx | 1 | 0 | ||||||||||||||||
G46 | 299 | Bx | 1 | 0 | ||||||||||||||||
G47 | 319 | Bx | 0 | 1 | ||||||||||||||||
G48 | 328 | Bx | 2 | 1 | ||||||||||||||||
G49 | 336 | Bx | 0 | 1 | ||||||||||||||||
G50 | 381 | Bx | 0 | 1 | ||||||||||||||||
G51 | 383 | Bx | 0 | 2 | ||||||||||||||||
G52 | 587 | Bx | 1 | 2 | ||||||||||||||||
G53 | 650 | AA | 0 | 1 | ||||||||||||||||
G54 | 654 | Bx | 1 | 0 | ||||||||||||||||
G55 | 657 | Bx | 1 | 0 | ||||||||||||||||
G56 | 680 | Bx | 1 | 0 | ||||||||||||||||
G57 | 720 | Bx | 0 | 1 | ||||||||||||||||
G58 | NR | Bx | 1 | 0 | ||||||||||||||||
G59 | NR | Bx | 1 | 0 | ||||||||||||||||
G60 | NR | Bx | 0 | 1 |
Genotypes | HS (n = 108) | SP (n = 100) | ||||||
---|---|---|---|---|---|---|---|---|
n | % | n | % | p | OR | 95% CI | p’ | |
Combined | ||||||||
KIR3DS1+/2DS2+ | 34 | 31.5 | 43 | 43.0 | NS | |||
KIR3DS1+/2DS2- | 25 | 23.1 | 28 | 28.0 | NS | |||
KIR3DS1-/2DS2+ | 17 | 15.7 | 12 | 12.0 | NS | |||
KIR3DS1-/2DS2- | 32 | 29.6 | 17 | 17.0 | 0.034 | 0.486 | 0.250–0.946 | 0.544 |
KIR3DS1+/2DL2+ | 38 | 35.2 | 48 | 48.0 | NS | |||
KIR3DS1+/2DL2- | 21 | 19.4 | 23 | 23.0 | NS | |||
KIR3DS1-/2DL2+ | 21 | 19.4 | 13 | 13.0 | NS | |||
KIR3DS1-/2DL2- | 28 | 25.9 | 16 | 16.0 | NS | |||
KIR3DS1+/2DL5+ | 53 | 49.1 | 54 | 54.0 | NS | |||
KIR3DS1+/2DL5- | 6 | 5.6 | 17 | 17.0 | 0.012 | 3.482 | 1.314–9.229 | 0.192 |
KIR3DS1-/2DL5+ | 10 | 9.3 | 8 | 8.0 | NS | |||
KIR3DS1-/2DL5- | 39 | 36.1 | 21 | 21.0 | 0.017 | 0.470 | 0.253–0.875 | 0.272 |
KIR3DS1+/2DS3+ | 19 | 17.6 | 20 | 20.0 | NS | |||
KIR3DS1+/2DS3- | 40 | 37.0 | 51 | 51.0 | 0.043 | 1.769 | 1.102–3.077 | 0.688 |
KIR3DS1-/2DS3+ | 6 | 5.6 | 2 | 2.0 | NS | |||
KIR3DS1-/2DS3- | 43 | 39.8 | 27 | 27.0 | NS | |||
Composed | ||||||||
KIR3DL1/HLA-ABw4 | 35 | 32 | 45 | 45.0 | NS | |||
KIR3DL1/HLA-Bw4Ile80 | 70 | 65 | 49 | 49.0 | 0.022 | 0.522 | 0.299–0.910 | 0.286 |
KIR3DL1/HLA-Bw4Thr80 | 58 | 54 | 41 | 41.0 | NS | |||
KIR3DL1/HLA-Bw4* | 91 | 84 | 83 | 83.0 | NS | |||
KIR3DS1/HLA-ABw4 | 23 | 21 | 38 | 38 | 0.009 | 2.265 | 1.228–4.180 | 0.117 |
KIR3DS1/HLA-Bw4Ile80 | 44 | 41 | 40 | 40 | NS | |||
KIR3DS1/HLA-Bw4Thr80 | 36 | 33 | 26 | 26 | NS | |||
KIR3DS1/HLA-Bw4* | 56 | 52 | 64 | 64 | NS | |||
KIR2DL1/HLA-C2 | 104 | 96 | 90 | 90 | NS | |||
KIR2DS1/HLA-C2 | 48 | 44 | 46 | 46 | NS | |||
KIR2DL2/HLA-C1 | 59 | 55 | 61 | 61 | NS | |||
KIR2DL3/HLA-C1 | 106 | 98 | 94 | 94 | NS | |||
KIR2DS2/HLA-C1 | 51 | 47 | 53 | 53 | NS |
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Graciano-Machuca, O.; Alvarado-Navarro, A.; Ramírez-Dueñas, M.G.; Villanueva-Quintero, D.G.; Velarde-de la Cruz, E.E.; Machado-Sulbarán, A.C.; Montoya-Buelna, M.; Sánchez-Hernández, P.E. Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population. Genes 2020, 11, 338. https://doi.org/10.3390/genes11030338
Graciano-Machuca O, Alvarado-Navarro A, Ramírez-Dueñas MG, Villanueva-Quintero DG, Velarde-de la Cruz EE, Machado-Sulbarán AC, Montoya-Buelna M, Sánchez-Hernández PE. Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population. Genes. 2020; 11(3):338. https://doi.org/10.3390/genes11030338
Chicago/Turabian StyleGraciano-Machuca, Omar, Anabell Alvarado-Navarro, María Guadalupe Ramírez-Dueñas, Delfina Guadalupe Villanueva-Quintero, Erandi Enif Velarde-de la Cruz, Andrea Carolina Machado-Sulbarán, Margarita Montoya-Buelna, and Pedro Ernesto Sánchez-Hernández. 2020. "Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population" Genes 11, no. 3: 338. https://doi.org/10.3390/genes11030338
APA StyleGraciano-Machuca, O., Alvarado-Navarro, A., Ramírez-Dueñas, M. G., Villanueva-Quintero, D. G., Velarde-de la Cruz, E. E., Machado-Sulbarán, A. C., Montoya-Buelna, M., & Sánchez-Hernández, P. E. (2020). Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population. Genes, 11(3), 338. https://doi.org/10.3390/genes11030338