Next Article in Journal
Experimental Evolution of Legume Symbionts: What Have We Learnt?
Next Article in Special Issue
Transcriptome Profiling Analyses in Psoriasis: A Dynamic Contribution of Keratinocytes to the Pathogenesis
Previous Article in Journal
Quantitative Trait Loci (QTLs) Associated with Microspore Culture in Raphanus sativus L. (Radish)
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population

by
Omar Graciano-Machuca
1,2,
Anabell Alvarado-Navarro
3,
María Guadalupe Ramírez-Dueñas
4,
Delfina Guadalupe Villanueva-Quintero
5,6,
Erandi Enif Velarde-de la Cruz
1,
Andrea Carolina Machado-Sulbarán
1,
Margarita Montoya-Buelna
4 and
Pedro Ernesto Sánchez-Hernández
4,*
1
Doctorate in Biomedical Sciences, Department of Physiology, University Center of Health Sciences (CUCS), University of Guadalajara (UDG), Guadalajara, Jal. 44340, Mexico
2
Laboratory of Biological Systems, Department of Health Sciences, University Center of the Valleys (CUVALLES), UDG, Ameca, Jal. 4660, Mexico
3
Research Center in Immunology and Dermatology, Department of Physiology, CUCS, UDG, Guadalajara, Jal. 44340, Mexico
4
Laboratory of Immunology, Department of Physiology, CUCS, UDG, Guadalajara, Jal. 44340, Mexico
5
Jalisco Dermatology Institute “Dr. José Barba Rubio”, Ministry of Health; Zapopan, Jal. 45190, Mexico
6
Inflammatory Diseases Care Center, Guadalajara, Jal. 44630, Mexico
*
Author to whom correspondence should be addressed.
Genes 2020, 11(3), 338; https://doi.org/10.3390/genes11030338
Submission received: 7 February 2020 / Revised: 10 March 2020 / Accepted: 20 March 2020 / Published: 22 March 2020
(This article belongs to the Special Issue Genetic Basis of Psoriasis)

Abstract

:
NK and some T cell functions are regulated by the interaction between KIR and HLA molecules. Several studies have shown an association between activating KIR genes and the development of autoimmune diseases, including psoriasis vulgaris (PsV). Our objective was to determine the association between KIR/HLA genes and genotypes with PsV in the Western mestizo Mexican population. One hundred subjects diagnosed with PsV (SP) and 108 healthy subjects (HS) were genotyped for 14 KIR genes, HLA-Bw4, HLA-C1, and HLA-C2 by PCR-single specific primer (SSP). Positive associations of the KIR3DS1 gene (odds ratio (OR) 1.959, p = 0.021), G11 genotype (OR 19.940, p = 0.008), and KIR3DS1/HLA-ABw4 (OR 2.265, p = 0.009) were found with susceptibility to PsV. In contrast, the G1 genotype (OR 0.448, p = 0.031) and KIR3DL1/HLA-Bw4Ile80 (OR 0.522, p = 0.022) were negatively associated with susceptibility to this disease. These results suggest an implication of the KIR3DS1/HLA-ABw4 genotype in PsV pathology.

1. Introduction

Psoriasis is a chronic erythematosquamous dermatosis with a worldwide prevalence in adults between 0.51% and 11.43% [1,2]. Psoriatic lesions are caused by epidermal hyperproliferation with parakeratosis and distributed symmetrically on the skin of the affected individual [3]. There are two major classifications of psoriasis. The first one is based on the age of onset: type I, with an age of onset before 40, and type II after 40 years [4]; the second one is according to the clinical form, of which the most common is psoriasis vulgaris (PsV), with 90% of cases [2]. The disease etiology is multifactorial, where environmental, infectious, immunological, and genetic factors are involved. PsV has a strong genetic background, loci in 424 genes have been reported, mainly HLA-Cw*0602 [5,6].
Characteristic lesions of PsV are plaques, usually affecting the extensor parts of the extremities particularly elbows, knees, scalp, lower lumbosacral region, and genitals [2,6]. Plaque histological changes in PsV are produced by the immune response of the inflammatory infiltrate, composed of NK cells, T cells, and others immune cells [7]. NK cell function is regulated by a complex network of activating and inhibitory signals generated by receptors expressed on their cell membrane, including killer cell immunoglobulin-like receptors (KIR) [8]. Some T cell populations also express KIR receptors and modulate their activation [9,10].
The KIR receptors are encoded by the KIR gene family, which is composed of 15 genes and two pseudogenes; it has a size of approximately 150Kb, localized within the leukocyte receptor complex, on chromosome 19q13.4 [8]. Six genes encode for activating receptors (KIR2DS1-2DS5 and 3DS1) and seven inhibitors (KIR2DL1-3, 2DL5, and 3DL1-3), and KIR2DL4 encodes a receptor that can perform both functions depending on where it is expressed in the cell, as well as two pseudogenes (KIR2DP1 and 3DP1) [8,10]. Of these, four are practically present in all individuals and are referred to as framework genes (KIR3DL3, 3DP1, 2DL4, and 3DL2) [10,11]. Two types of KIR haplotypes are distinguished, designated as A and B. B haplotypes are characterized by containing at least one of the genes: KIR2DL2, 2DL5, 2DS1-2DS3, 2DS5, 3DS1; and frequently have more genes than the A haplotypes; whereas the A haplotypes lack the aforementioned genes and tend to be less numerous. The inhibitory KIR receptors have a long cytoplasmic tail, which contains two ITIM motifs, unlike activating KIR receptors that present a short cytoplasmic tail associated with the adapter protein DAP-12, which has two ITAM motifs [8,10].
KIR ligands are HLA class I (HLA-I) molecules. Most KIR/HLA-I interactions have been extensively described [8]. KIR2DS1 and 2DL1 bind to the HLA-C group with residue K80 (HLA-Cw*02, Cw*04, Cw*05, and Cw*06). KIR2DS2, 2DL2, and 2DL3 recognize the HLA-C group with residue N80 (HLA-Cw*01, Cw*03, Cw*07, and Cw*08) [8,10]. KIR3DS1 and 3DL1 recognize the HLA-A and HLA-B expressing the Bw4 epitope; KIR3DL2 recognizes HLA-A3 and A11; KIR2DL4 to HLA-G; KIR2DS4 and 3DL2 to HLA-F. However, for the KIR2DL5, 2DS5, and 3DL3 receptors, the ligands are still unknown [8,10].
Studies in Caucasian and Asian populations have suggested positive associations of KIR2DS1 [12,13,14,15,16,17] and 2DL5 [12,17] genes, as well as the KIR2DS1/HLA-Cw*0602 genotype with susceptibility to PsV [13,16]. Additionally, in American Caucasian populations, KIR3DL1*Low alleles (alleles expressed at low levels) have been positively associated with susceptibility to PsV [18]; while the KIR3DL1*Null alleles (alleles not expressed at the cell surface) were found to be negatively associated with susceptibility [18,19]. The aim of this study was to elucidate the association between KIR/HLA-I genes and genotypes with psoriasis vulgaris in the mestizo population from Western Mexico.

2. Materials and Methods

2.1. Subjects

We included 108 healthy subjects (HS) without familiar antecedents of psoriasis and 100 subjects with clinical and histopathological diagnosis of PsV (SP) from the Instituto Dermatológico de Jalisco “Dr. José Barba Rubio”, Jalisco, México, during the period from December 2013 to July 2015. SP were classified according to the age of onset type I (< 40 years) and type II (> 40 years). SP with other autoimmune diseases were excluded. HS were matched with SP according to gender and age. Both groups were mestizos over 18 years from Western Mexico (Aguascalientes, Colima, Guanajuato, Jalisco, Michoacán, Nayarit, and Zacatecas) for at least three generations.

2.2. Ethical Approval

The study was approved by the ethics committee of University Center for Health Sciences, University of Guadalajara, and the Ministry of Health of the State of Jalisco in Mexico (Ethical Approval Code 37/IDJ-JAL/2013); fulfilling the general health law regulations for medical research involving human subjects and the World Medical Association Declaration of Helsinki: ethical principles for medical research involving human subjects [20]. Informed consent was obtained from all participants.

2.3. DNA Extraction and KIR/HLA Genotyping

DNA was extracted from a peripheral blood sample using the modified salting-out technique, according to Miller et al. [21]; the sample was resuspended in sterile distilled water and stored at −20 °C until use. DNA samples were genotyped for 14 KIR genes (KIR2DS1-5, 3DS1, 2DL1-5, and 3DL1-3), two KIR pseudogenes (KIR2DP1 and 3DP1), HLABw4 (HLA-ABw4, HLA-Bw4Ile80, and HLA-Bw4Thr80), and HLA-C (HLA-C1 and C2) by polymerase chain reaction-single specific primer (PCR-SSP). Conditions and primers used for KIR, HLA-Bw4, and HLA-C genotyping were according to previously reported methods [22,23,24]. PCR products were visualized by electrophoresis on 3.0% agarose gel Ultrapure TBE buffer 0.5× (Invitrogen™ | Life Technologies, Carlsbad, CA, USA), stained with Sybr Safe solution (Invitrogen™ | Life Technologies, Carlsbad, CA, USA) for 45 min in the dark and photographed with Kodak Molecular Imaging Software V5 (Carestream Health Inc, Rochester, NY, USA).

2.4. Statistical Analysis.

The carrier frequencies (CF) of KIR genes, HLA class I allelic groups, and genotypes (AA and Bx gene-content, KIR combined, and KIR/HLA composed) were obtained by direct counting. Gene frequencies (GF) of KIR genes and HLA allelic groups were determined by Bernstein’s formula: G F = 1 ( 1 F ) . (using CF) [25]. For the KIR genotype profile, Hardy–Weinberg equilibrium was calculated in both groups. The comparisons of the gene and genotype frequencies were performed with the X2; odds ratios (OR) with 95% confidence interval (95% CI) were estimated for susceptibility association using GraphPad Prism Software Version 8.02. p < 0.05 values were considered statistically significant and adjusted with Holm–Bonferroni correction for multiple comparisons. PS Power and the Sample Size Calculation Version 3.1.6 program were used to calculate the statistical power of this study, which ranged between 90 and 100%, except for three analyses, which were specified in the Results Section. Linkage disequilibrium (LD) values for KIR genes were assessed using the Wn statistic (Cramer’s V statistic):
Wn^*=((ad-bc))⁄(√((a+b)(c+d)(a+c)(b+d))).

3. Results

3.1. Clinical and Demographic Characteristics

One hundred eight HS were included in this study and 100 SP. The mean age for HS was 48.5 ± 12.5 years (range 18–79); the gender proportion was 1:1 (54 females and 54 males). In SP, the mean age was 47.7 ± 14.7 years (range 18–76); and the gender proportion was 1:1 (50 females and 50 males). Thirty-one SP reported family background affected by psoriasis (31%). Type I psoriasis (onset before age 40) was reported in 62 SP; whereas type II psoriasis (onset after 40 years) in 38 SP. Type I SP showed a higher frequency of family background than type II SP (37% vs 21%), without a significant difference (p = 0.096).

3.2. Frequencies of KIR Genes and HLA Class I Alleles

KIR and HLA class I gene frequencies were compared between HS and SP (Table 1). A significant increase in the carrier frequency of KIR3DS1 was found in SP compared to HS (OR 1.959, 95% CI 1.102–3.481, p = 0.021) before Holm–Bonferroni correction. Framework genes (KIR2DL4, 3DL2, 3DL3, and 3DP1) were identified in almost all studied participants. The other KIR genes (KIR2DL1, 2DL2, 2DL3, 3DL1, 2DS1, 2DS2, 2DS3, 2DS4, 2DS5, 2DP1, and 2DL5) showed similar carrier frequencies, without significant differences between SP and HS.
The HLA-ABw4 allelic group was significantly higher in SP than in HS before Holm–Bonferroni correction, but with low statistical power (OR 1.769, CI 95% 1.016-3.081, p = 0.044; statistical power = 69.95%). The HLA-Bw4Ile80 allelic group showed a lower frequency in SP than in HS (OR 0.517, CI 95% 0.293-0.911, p = 0.023) before Holm–Bonferroni correction. The frequencies of HLA-C1 and -C2 groups were similar in SP and HS. However, the statistical significances of KIR3DS1, HLA-ABw4, and HLA-Bw4Ile80 were lost after Holm–Bonferroni correction for multiple comparisons (p’ = 0.336, p’ = 0.264, and p’ = 0.138, respectively).

3.3. KIR Genotypes Profiles

The KIR genotype profiles are shown in Table 2; sixty different KIR genotypes were found: 21 in SP, 19 in HS, and 20 shared in both groups. A significant decrease of genotype 1 (ID 1, according to the Allele Frequency Net Database, consulted in 2020 [26]) in SP compared to HS (OR 0.448, 95% CI 0.217–0.928, p = 0.031) was found. On the other hand, genotype 11 (ID 14, according to the Allele Frequency Net Database, consulted in 2020 [26]) showed a statistically significant increase in SP compared to HS (OR 19.940, 95% CI 1.135-350.400, p = 0.008).
KIR genotypes were classified as AA and Bx according to the KIR gene content. Although the AA genotype frequency was higher in HS than in SP (25% vs. 15%, respectively), and consequently Bx genotypes in the SP compared with HS (85% vs. 75%, respectively), there were no significant differences (p = 0.075).

3.4. KIR Combined Genotypes

Due to the positive association of the KIR3DS1 gene with the susceptibility to psoriasis, KIR3DS1 combined genotypes analysis were performed. The main KIR combined genotype frequencies are shown in Table 3. KIR3DS1-/2DS2- and KIR3DS1-/2DL5- genotypes were significantly lower in SP than in HS (OR 0.486, 95% CI 0.250–0.946, p = 0.034 and OR 0.470, 95% CI 0.253–0.875, p = 0.017; respectively); however, the KIR3DS1-/2DL5- genotype showed low statistical power (58.91%). On the other hand, the KIR3DS1+/2DL5- and KIR3DS1+/2DS3- genotypes showed increased frequency in SP compared to HS (OR 3.482, 95% CI 1.314–9.229, p = 0.012 and OR 1.769, 95% CI 1.102–3.077, p = 0.043; respectively). However, after Holm–Bonferroni correction, differences in the combined genotype lost significance. Linkage disequilibrium (LD) of KIR3DS1 with 2DS2, 2DS3, 2DL2, and 2DL5 was calculated in HS (Wn2DS2 = 0.229, Wn2DS3 = 0.236, Wn2DL2 = 0.215, and Wn2DL 5 = 0.701; p = 0.0001) and SP (Wn2DS2 = 0.175, Wn2DS3 = 0.233, Wn2DL2 = 0.211, and Wn2DL5 = 0.453; p = 0.0001).

3.5. KIR/HLA Composed Genotype Frequencies

The KIR/HLA genotype frequencies in both groups were analyzed and are shown in Table 3. The KIR3DS1/HLA-ABw4 activating genotype showed a positive association with susceptibility to PsV (OR 2.265, 95% CI 1.228–4.180, p = 0.009); while the inhibitory genotype KIR3DL1/HLA-Bw4Ile80 was negatively associated with susceptibility to PsV (OR 0.522, 95% CI 0.299–0.910, p = 0.022), but with low statistical power (59.24%). The KIR/HLA-C genotypes presented an equal distribution between groups. The significance of the composed genotypes was lost after Holm–Bonferroni correction.

3.6. Association of the iKIR and aKIR Number with Susceptibility to PsV

Genotypes were evaluated according to the number of inhibitory and activating KIR genes and are shown in Figure 1. Genotypes with a single activator gene were increased significantly in HS compared to SP (OR 0.509, 95% CI 0.261–0.922, p = 0.047), but the significance of this difference disappeared after Holm–Bonferroni correction (p’ = 0.282).

4. Discussion

Here, we report for the first time the association of KIR/HLA genes and genotypes with PsV susceptibility in the Western Mexican mestizo population. Our KIR gene frequency data in HS showed similarity with previous reports from the same region [27,28]. The comparison with SP suggested that the KIR3DS1 gene was a susceptibility factor for PsV in our studied population. Similarly, a study conducted in the European population in 2012 by Chen et al. found an association between KIR3DS1 gene presence and PsV susceptibility (SP = 46.6% vs. HS = 32.6%, p < 0.001) [29]. The KIR3DS1 gene has also been associated with susceptibility to psoriatic arthritis, a seronegative spondyloarthropathy related to psoriasis disease [30]. In contrast to our results, studies in Japanese, Polish, American, Swedish, and Brazilian populations have shown a positive association mainly with the KIR2DS1 gene [12,13,14,15,16]. However, we did not find an association with KIR2DS1; a possible explanation for this could be related to the HLA-Cw*0602 allele, as described by Dunphy et al. who suggested that the association between the KIR2DS1 gene and psoriasis could be due to the presence of HLA-Cw*0602 and not to KIR2DS1 [31]. However, it is important to note that we did not typify this HLA-C allele.
Concerning HLA frequencies, our results showed that HLA-ABw4 and HLA-Bw4Ile80 allelic frequencies were higher and lower respectively in SP than in HS. The HLA-C frequencies were similarly distributed between HS and SP. Contrary to our results, Ahn et al. reported no association of the HLA-Bw4 allelic group with psoriasis [18]; while Berinstein et al. found an increased HLA-Bw4Ile80 frequency in PS compared to HS [19]; both studies were performed in American Caucasian populations. However, it would be interesting to evaluate the association of the specific HLA class I alleles to psoriasis in our population, such as HLA-Cw*0602, which has been the main susceptibility factor for this pathology [32].
The current study revealed 60 KIR genotype profiles; three of them (G58–G60) have not been previously reported in the Allele Frequency Net Database [26]. The genotype identified as G1, an AA genotype, was a protective factor in our population. This genotype is composed of six genes encoding inhibitory receptors and only a gene encoding an activating receptor, which could be limiting the inflammatory process. In the same population, Ramírez-De Los Santos et al. found this genotype (G1) as a protective factor against rheumatoid arthritis [27]. On the other hand, we found that the G14 genotype, a Bx genotype, which contains the KIR3DS1 gene, possibly was a susceptibility factor for PsV in our population due to its increased frequency in SP. When KIR genotypes profiles were classified according to the gene content, we observed that Bx genotypes were more frequent in our study population. The Bx and AA genotype frequencies found in this study agreed with previous reports from our population [27,28]. Studies in autoimmune diseases, such as type 1 diabetes, systemic sclerosis, rheumatoid vasculitis, and rheumatoid arthritis, have shown an increased frequency of Bx genotypes in patients compared to the control group, which could be since that Bx genotypes, compared to AA genotypes, usually contain a greater number of genes that encode activating receptors, including KIR3DS1 [27,33,34].
When we analyzed the genotype formed by the receptor and its ligand genes (composed genotype), we observed an increased frequency of KIR3DS1/HLA-ABw4 in SP compared with HS, while the KIR3DL1/HLA-Bw4Ile80 genotype frequency was increased in HS. In this sense, several studies reported that the KIR/HLA class I genotypes could be associated with PsV development. Ahn et al. investigated the association of KIR3DL1 alleles and HLA-Bw4, and they found a positive association of the KIR3DL1*Low/HLA-Bw4 composed genotype with susceptibility to PS [18]; however, unlike our study, they performed a KIR3DL1 allelic typing and determined the presence of the HLA-Bw4 epitope. Recently, Berinstein et al. reported a negative association of KIR3DL1*Null alleles with psoriasis susceptibility [19]; however, in this study, KIR3DL1 alleles/HLA-Bw4 composed genotypes were not analyzed.
According to our results, we could hypothesize that the receptors KIR3DS1 and KIR3DL1 could modulate the development of psoriasis through binding to their ligands in two aspects. The first of these could occur during the NK cell licensing process that involves signaling generated through inhibitory receptors. Alter et al. suggested that high levels of KIR3DL1 expression and binding to HLA-Bw4Ile80 molecules in the process of licensing could generate NK cells with a more efficient cytotoxic function, as opposed to when there is a low expression of this receptor [35]. In contrast, recognition by activating receptors such as KIR2DS1 has been associated with decreased cytotoxic capacity against the target cell [36]. The second aspect would occur during the effector phase; KIR3DS1 could activate NK cells and some T cells populations through the accessory protein DAP-12 [37]. HLA-Bw4 and KIR3DS1 interaction could stimulate the IFN-γ and other cytokines overproduction, and this, in turn, could induce keratinocyte proliferation and secretion of adhesion molecules, chemokines, and proinflammatory cytokines related to the lesion initiation and feedback [38,39]. Nevertheless, the inflammatory process could be decreased by HLA-Bw4Ile80 recognition through KIR3DL1. Inhibitory KIR block downstream signals that are generated by activating receptors [39].

5. Conclusions

This study reported for the first time an association of KIR genes and genotypes with PsV susceptibility in the Western Mexican mestizo population. We found the KIR3DS1 gene and KIR3DS1/HLA-ABw4 genotype as susceptibility factors for PsV, whereas the KIR3DL1/HLA-Bw4Ile80 genotype was found as a protective factor. This may suggest that NK and T cells could modulate the inflammatory process in PsV through the binding of KIR3DL1 and 3DS1 receptors to HLA-Bw4 alleles. However, it is necessary to perform functional expression studies to elucidate the role of KIR receptors in the PsV pathology.

Author Contributions

Conceptualization, P.E.S.-H., M.G.R.-D., A.A.-N., and D.G.V.-Q.; methodology, O.G.-M., E.E.V.-d.l.C., A.C.M.-S., and P.E.S.-H.; formal analysis, O.G.-M., A.C.M.-S., and P.E.S.-H.; investigation, O.G.-M., P.E.S.-H., M.G.R.-D., D.G.V.-Q., and A.A.-N.; resources, O.G.-M., P.E.S.-H., M.G.R.-D., and A.A.-N.; writing, original draft preparation, O.G.-M., E.E.V.-d.l.C., A.C.M.-S., and P.E.S.-H.; writing, review and editing, O.G.-M., P.E.S.-H., M.G.R.-D., and A.A.-N.; visualization, P.E.S.-H., M.G.R.-D., A.A.-N., and M.M.-B.; supervision, P.E.S.-H., M.G.R.-D., A.A.-N., and M.M.-B.; project administration, P.E.S.-H., M.G.R.-D., and A.A.-N.; funding acquisition, P.E.S.-H., M.G.R.-D., and A.A.-N. All authors read and agreed to the published version of the manuscript.

Funding

This research was funded by the Support for the Improvement of SNI and SNCA Production Conditions (PRO-SNI) 2013-2015 programs from Universidad de Guadalajara granted to P.E.S.-H., M.G.R.-D., and A.A.-N.

Acknowledgments

We thank Isela González, Teresa Valencia Ponce, and Francisco Arturo Miranda Gomez for supporting the recruitment of participants.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; nor in the decision to publish the results.

References

  1. Michalek, I.M.; Loring, B.; John, S. A systematic review of worldwide epidemiology of psoriasis. J. Eur. Acad. Dermatol. Venereol. 2016, 31, 205–212. [Google Scholar] [CrossRef] [PubMed]
  2. Rendon, A.; Schäkel, K. Psoriasis Pathogenesis and Treatment. Int. J. Mol. Sci. 2019, 20, 1475. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  3. De Masson, A.; Bouaziz, J.; Battistella, M.; Bagot, M.; Bensussan, A. Immunopathologie du psoriasis. Médecine/Sciences 2016, 32, 253–259. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  4. Raychaudhuri, S.K.; Maverakis, E.; Raychaudhuri, S.P. Diagnosis and classification of psoriasis. Autoimmun. Rev. 2014, 13, 490–495. [Google Scholar] [CrossRef] [PubMed]
  5. Kamiya, K.; Kishimoto, M.; Sugai, J.; Komine, M.; Ohtsuki, M. Risk Factors for the Development of Psoriasis. Int. J. Mol. Sci. 2019, 20, 4347. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  6. Singh, S.; Pradhan, D.; Puri, P.; Ramesh, V.; Aggarwal, S.; Nayek, A.; Jain, A. Genomic alterations driving psoriasis pathogenesis. Gene 2019, 683, 61–71. [Google Scholar] [CrossRef] [PubMed]
  7. Diani, M.; Altomare, G.; Reali, E. T cell responses in psoriasis and psoriatic arthritis. Autoimmun. Rev. 2015, 14, 286–292. [Google Scholar] [CrossRef]
  8. Rajalingam, R. Diversity of Killer Cell Immunoglobulin-Like Receptors and Disease. Clin. Lab. Med. 2018, 38, 637–653. [Google Scholar] [CrossRef]
  9. Strickland, F.M.; Patel, D.; Khanna, D.; Somers, E.C.; Robida, A.M.; Pihalja, M.; Swartz, R.; Marder, W.; Richardson, B. Characterisation of an epigenetically altered CD4+ CD28+ Kir+ T cell subset in autoimmune rheumatic diseases by multiparameter flow cytometry. Lupus Sci. Med. 2016, 3, e000147. [Google Scholar] [CrossRef] [Green Version]
  10. Biassoni, R.; Malnati, M. Human Natural Killer Receptors, Co-Receptors, and Their Ligands. Curr. Protoc. Immunol. 2018, 121, e47. [Google Scholar] [CrossRef]
  11. Wroblewski, E.E.; Parham, P.; Guethlein, L.A. Two to Tango: Co-evolution of Hominid Natural Killer Cell Receptors and MHC. Front. Immunol. 2019, 10, 177. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  12. Suzuki, Y.; Hamamoto, Y.; Ogasawara, Y.; Ishikawa, K.; Yoshikawa, Y.; Sasazuki, T.; Muto, M. Genetic Polymorphisms of Killer Cell Immunoglobulin-Like Receptors Are Associated with Susceptibility to Psoriasis Vulgaris. J. Investig. Dermatol. 2004, 122, 1133–1136. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  13. Łuszczek, W.; Manczak, M.; Cisło, M.; Nockowski, P.; Wiśniewski, A.; Jasek, M.; Kusnierczyk, P. Gene for the activating natural killer cell receptor, KIR2DS1, is associated with susceptibility to psoriasis vulgaris. Hum. Immunol. 2004, 65, 758–766. [Google Scholar] [CrossRef] [PubMed]
  14. Williams, F.; Meenagh, A.; Sleator, C.; Cook, D.; Fernandez-Vina, M.; Bowcock, A.M.; Middleton, D. Activating Killer Cell Immunoglobulin-Like Receptor Gene KIR2DS1 Is Associated With Psoriatic Arthritis. Hum. Immunol. 2005, 66, 836–841. [Google Scholar] [CrossRef]
  15. Holm, S.J.; Sakuraba, K.; Mallbris, L.; Wolk, K.; Ståhle, M.; Sánchez, F. Distinct HLA-C/KIR Genotype Profile Associates with Guttate Psoriasis. J. Investig. Dermatol. 2005, 125, 721–730. [Google Scholar] [CrossRef] [Green Version]
  16. Jobim, L.F.J.; Salim, P.H.; Cestari, T.F.; Toresan, R.; Gil, B.C.; Jobim, M.R.; Wilson, T.J.; Krüger, M.; Schlottfeldt, J.; Schwartsmann, G. A study of the killer cell immunoglobulin-like receptor gene KIR2DS1 in a Caucasoid Brazilian population with psoriasis vulgaris. Tissue Antigens 2008, 72, 392–396. [Google Scholar] [CrossRef]
  17. Nemoto, K.; Muto, M. Genotyping of human killer cell immunoglobulin-like receptor genes in Japanese patients with psoriatic arthritis, generalized pustular psoriasis or psoriasis vulgaris. Bull. Yamaguchi Med. Sch. 2011, 58, 37–43. [Google Scholar]
  18. Ahn, R.S.; Moslehi, H.; Martin, M.; Abad-Santos, M.; Bowcock, A.M.; Carrington, M.; Liao, W. Inhibitory KIR3DL1 alleles are associated with psoriasis. Br. J. Dermatol. 2015, 174, 449–451. [Google Scholar] [CrossRef] [Green Version]
  19. Berinstein, J.; Pollock, R.; Pellett, F.; Thavaneswaran, A.; Chandran, V.; Gladman, D. Association of variably expressed KIR3dl1 alleles with psoriatic disease. Clin. Rheumatol. 2017, 36, 2261–2266. [Google Scholar] [CrossRef]
  20. World Medical Association WMA Declaration of Helsinki ethical principles for medical research involving human subjects. Fortaleza (Brazil): 64th WMA General Assembly. 2013. Available online: https://www.wma.net/policies-post/wma-declaration-of-helsinki-ethical-principles-for-medical-research-involving-human-subjects/ (accessed on 10 May 2015).
  21. Miller, S.; Dykes, D.; Polesky, H. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 1988, 16, 1215. [Google Scholar] [CrossRef] [Green Version]
  22. Vilches, C.; Castano, J.; Estefanía, E.; Gómez-Lozano, N. Facilitation of KIR genotyping by a PCR-SSP method that amplifies short DNA fragments. Tissue Antigens 2007, 70, 415–422. [Google Scholar] [CrossRef] [PubMed]
  23. Hiby, S.; Regan, L.; Lo, W.; Farrell, L.E.; Carrington, M.; Moffett, A. Association of maternal killer-cell immunoglobulin-like receptors and parental HLA-C genotypes with recurrent miscarriage. Hum. Reprod. 2008, 23, 972–976. [Google Scholar] [CrossRef] [PubMed]
  24. Tajik, N.; Shahsavar, F.; Poormoghim, H.; Radjabzadeh, M.F.; Mousavi, T.; Jalali, A. KIR3DL1+HLA-B Bw4Ile80 and KIR2DS1+HLA-C2 combinations are both associated with ankylosing spondylitis in the Iranian population. Int. J. Immunogenetics 2011, 38, 403–409. [Google Scholar] [CrossRef] [PubMed]
  25. Single, R.M.; Martin, M.P.; Meyer, D.; Gao, X.; Carrington, M. Methods for assessing gene content diversity of KIR with examples from a global set of populations. Immunogenetics 2008, 60, 711–725. [Google Scholar] [CrossRef] [Green Version]
  26. González-Galarza, F.F.; Takeshita, L.Y.; Santos, E.J.; Kempson, F.; Maia, M.H.T.; Da Silva, A.L.S.; E Silva, A.L.T.; Ghattaoraya, G.S.; Alfirevic, A.; Jones, A.R.; et al. Allele frequency net 2015 update: New features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations. Nucleic Acids Res. 2014, 43, D784–D788. [Google Scholar] [CrossRef]
  27. Santos, S.R.-D.L.; Hernandez, P.E.S.; Muñoz-Valle, J.; Palafox-Sánchez, C.A.; Rosales-Rivera, L.; García-Iglesias, T.; Daneri-Navarro, A.; Ramírez-Dueñas, M. Associations of Killer Cell Immunoglobulin- Like Receptor Genes with Rheumatoid Arthritis. Dis. Markers 2012, 33, 201–206. [Google Scholar] [CrossRef]
  28. Machado-Sulbaran, A.C.; Muñoz-Valle, J.F.; Ramirez-Dueñas, M.G.; Baños-Hernández, C.J.; Graciano-Machuca, O.; La Cruz, E.E.V.-D.; Parra-Rojas, I.; Hernandez, P.E.S. Distribution of KIR genes and KIR2DS4 gene variants in two Mexican Mestizo populations. Hum. Immunol. 2017, 78, 614–620. [Google Scholar] [CrossRef]
  29. Chen, H.; Hayashi, G.; Lai, O.Y.; Dilthey, A.; Kuebler, P.J.; Wong, T.V.; Martin, M.P.; Vina, M.A.F.; McVean, G.; Wabl, M.; et al. Psoriasis Patients Are Enriched for Genetic Variants That Protect against HIV-1 Disease. PLoS Genet. 2012, 8, e1002514. [Google Scholar] [CrossRef]
  30. Enciso-Vargas, M.; Alvarado-Ruíz, L.; Villanueva, A.S.S.; Macías-Barragán, J.; Buelna, M.M.; Oceguera-Contreras, E.; Alvarado-Navarro, A.; Graciano-Machuca, O. Association Study between Psoriatic Arthritis and Killer Immunoglobulin-Like Receptor (KIR) Genes: A Meta-Analysis. Immunol. Investig. 2020, 20, 1–12. [Google Scholar] [CrossRef]
  31. Dunphy, S.; Sweeney, C.; Kelly, G.; Tobin, A.; Kirby, B.; Gardiner, C. Natural killer cells from psoriasis vulgaris patients have reduced levels of cytotoxicity associated degranulation and cytokine production. Clin. Immunol. 2017, 177, 43–49. [Google Scholar] [CrossRef]
  32. Lee, E.B.; Wu, K.K.; Lee, M.P.; Bhutani, T.; Wu, J.J. Psoriasis risk factors and triggers. Cutis 2018, 102, 18–20. [Google Scholar] [PubMed]
  33. Machado-Sulbaran, A.C.; Ramírez-Dueñas, M.G.; Navarro-Zarza, J.E.; Muñoz-Valle, J.F.; Carrera, F.M.; Baños-Hernández, C.J.; Parra-Rojas, I.; Buelna, M.M.; Hernandez, P.E.S. KIR/HLA Gene Profile Implication in Systemic Sclerosis Patients from Mexico. J. Immunol. Res. 2019, 2019, 6808061–11. [Google Scholar] [CrossRef] [PubMed]
  34. Kusnierczyk, P.K. Killer Cell Immunoglobulin-Like Receptor Gene Associations with Autoimmune and Allergic Diseases, Recurrent Spontaneous Abortion, and Neoplasms. Front. Immunol. 2013, 4, 8. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  35. Alter, G.; Rihn, S.; Walter, K.; Nolting, A.; Martin, M.; Rosenberg, E.S.; Miller, J.S.; Carrington, M.; Altfeld, M. HLA Class I Subtype-Dependent Expansion of KIR3DS1+ and KIR3DL1+ NK Cells during Acute Human Immunodeficiency Virus Type 1 Infection ▿. J. Virol. 2009, 83, 6798–6805. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  36. Fauriat, C.; Ivarsson, M.A.; Ljunggren, H.-G.; Malmberg, K.-J.; Michaëlsson, J. Education of human natural killer cells by activating killer cell immunoglobulin-like receptors. Blood 2010, 115, 1166–1174. [Google Scholar] [CrossRef] [Green Version]
  37. Carr, W.H.; Rosen, D.B.; Arase, H.; Nixon, D.F.; Michaelsson, J.; Lanier, L.L. Cutting Edge: KIR3DS1, a Gene Implicated in Resistance to Progression to AIDS, Encodes a DAP12-Associated Receptor Expressed on NK Cells That Triggers NK Cell Activation1. J. Immunol. 2007, 178, 647–651. [Google Scholar] [CrossRef] [Green Version]
  38. Ammar, M.; Souissi-Bouchlaka, C.; Gati, A.; Zaraa, I.; Bouhaha, R.; Kouidhi, S.; Ben Ammar-Gaied, A.; Doss, N.; Mokni, M.; Marrakchi, R. Le psoriasis: Physiopathologie et immunogénétique. Pathol. Boil. 2014, 62, 10–23. [Google Scholar] [CrossRef]
  39. Macfarlane, A.; Campbell, K.S. Signal Transduction in Natural Killer Cells. In Current Topics in Microbiology and Immunology; Springer Science and Business Media LLC: Berlin/Heidelberg, Germany, 2006; Volume 298, pp. 23–57. [Google Scholar]
Figure 1. Distribution of inhibitory and activating KIR genes in healthy subjects (HS) and subjects with psoriasis vulgaris (SP). * p = 0.047 based on X2 and p’ = 0.282, based on Holm–Bonferroni correction for multiple comparisons.
Figure 1. Distribution of inhibitory and activating KIR genes in healthy subjects (HS) and subjects with psoriasis vulgaris (SP). * p = 0.047 based on X2 and p’ = 0.282, based on Holm–Bonferroni correction for multiple comparisons.
Genes 11 00338 g001
Table 1. Distribution of KIR and HLA genes in healthy subjects and subjects with psoriasis vulgaris.
Table 1. Distribution of KIR and HLA genes in healthy subjects and subjects with psoriasis vulgaris.
GeneHS
(n = 108)
SP
(n = 100)
nCF%CFGFnCF%CFGFpOR95% CIp’
KIR
2DL1108100.01.009999.00.90NS
2DL25954.60.336161.00.38NS
2DL310799.10.909696.00.80NS
3DL110193.50.759292.00.72NS
3DL210698.10.869999.00.90NS
2DS15248.10.285252.00.31NS
2DS25147.20.275555.00.33NS
2DS32422.20.122121.00.11NS
2DS410193.50.759292.00.72NS
2DS54743.50.254747.00.27NS
3DS16055.60.337171.00.460.0211.9591.102–3.4810.336
2DP110799.10.909999.00.90NS
3DL3108100.01.00100100.01.00NS
2DL4108100.01.00100100.01.00NS
2DL56358.30.356262.00.38NS
3DP1108100.01.00100100.01.00NS
HLA
C110799.10.909898.00.86NS
C210092.60.739090.90.70NS
A (Bw4)3936.10.205050.00.290.0441.7691.016–3.0810.264
Bw4Ile807569.40.455454.00.320.0230.5170.293–0.9110.138
Bw4Thr806257.40.354343.00.25NS
Bw4*9890.70.709090.00.68NS
HS: Healthy Subjects; SP: Subjects with Psoriasis vulgaris; KIR: Killer Immunoglobulin-like Receptor; HLA: Human Leukocyte Antigen; CF: Carrier Frequency; GF: Gene Frequency; OR: Odds Ratio; CI: Confidence Interval; NS: Not Significant; p based on X2 test and adjusted p’ based on Holm-Bonferroni correction for multiple comparisons. Significant differences between groups are in bold. * At least one positive HLA-Bw4 reaction.
Table 2. KIR genotype profile of healthy subjects and subjects with psoriasis vulgaris.
Table 2. KIR genotype profile of healthy subjects and subjects with psoriasis vulgaris.
GENOTYPEKIR GENESHSSP
GIDAA and Bx gene-content genotypes3DL12DL12DL32DS42DL22DL53DS12DS12DS22DS32DS52DL43DL23DL32DP13PD1n = 108n = 100
G1*1AA 2713
G22Bx 129
G33Bx 1314
G44Bx 64
G55Bx 42
G66Bx 25
G77Bx 34
G88Bx 10
G99Bx 11
G1013Bx 22
G11**14Bx 08
G1215Bx 11
G1318Bx 30
G1419Bx 20
G1520Bx 01
G1622Bx 11
G1727Bx 10
G1828Bx 10
G1929Bx 01
G2031Bx 31
G2133Bx 10
G2238Bx 11
G2344Bx 20
G2449Bx 01
G2556Bx 11
G2658Bx 01
G2769Bx 21
G2870Bx 12
G2975Bx 01
G3080Bx 03
G3186Bx 01
G3287Bx 11
G3393Bx 10
G3494Bx 01
G35136Bx 01
G36137Bx 01
G37167Bx 10
G38180AA 01
G39184Bx 10
G40188Bx 13
G41191Bx 10
G42200Bx 01
G43240Bx 01
G44260Bx 10
G45266Bx 10
G46299Bx 10
G47319Bx 01
G48328Bx 21
G49336Bx 01
G50381Bx 01
G51383Bx 02
G52587Bx 12
G53650AA 01
G54654Bx 10
G55657Bx 10
G56680Bx 10
G57720Bx 01
G58NRBx 10
G59NRBx 10
G60NRBx 01
HS: healthy subjects; SP: subjects with psoriasis vulgaris; G: genotype identified assigned in this study; ID: ID González-Galarza (January 2020); NR: not reported, ID; black box = gene detected; white box = gene absent. Significant differences between both groups are in bold. * p = 0.031, OR = 0.448, 95% CI: 0.217 to 0.928; p’ = 1.000, ** p = 0.008, OR = 19.94, 95% CI: 1.135 to 350.400; p ’= 0.480.
Table 3. Distributions of KIR combined and KIR/HLA composed genotypes in healthy subjects and subjects with psoriasis vulgaris.
Table 3. Distributions of KIR combined and KIR/HLA composed genotypes in healthy subjects and subjects with psoriasis vulgaris.
GenotypesHS
(n = 108)
SP
(n = 100)
n%n%pOR95% CIp’
Combined
KIR3DS1+/2DS2+3431.54343.0NS
KIR3DS1+/2DS2-2523.12828.0NS
KIR3DS1-/2DS2+1715.71212.0NS
KIR3DS1-/2DS2-3229.61717.00.0340.4860.250–0.9460.544
KIR3DS1+/2DL2+3835.24848.0NS
KIR3DS1+/2DL2-2119.42323.0NS
KIR3DS1-/2DL2+2119.41313.0NS
KIR3DS1-/2DL2-2825.91616.0NS
KIR3DS1+/2DL5+5349.15454.0NS
KIR3DS1+/2DL5-65.61717.00.0123.4821.314–9.2290.192
KIR3DS1-/2DL5+109.388.0NS
KIR3DS1-/2DL5-3936.12121.00.0170.4700.253–0.8750.272
KIR3DS1+/2DS3+1917.62020.0NS
KIR3DS1+/2DS3-4037.05151.00.0431.7691.102–3.0770.688
KIR3DS1-/2DS3+65.622.0NS
KIR3DS1-/2DS3-4339.82727.0NS
Composed
KIR3DL1/HLA-ABw435324545.0NS
KIR3DL1/HLA-Bw4Ile8070654949.00.0220.5220.299–0.9100.286
KIR3DL1/HLA-Bw4Thr8058544141.0NS
KIR3DL1/HLA-Bw4*91848383.0NS
KIR3DS1/HLA-ABw4232138380.0092.2651.228–4.1800.117
KIR3DS1/HLA-Bw4Ile8044414040NS
KIR3DS1/HLA-Bw4Thr8036332626NS
KIR3DS1/HLA-Bw4*56526464NS
KIR2DL1/HLA-C2104969090NS
KIR2DS1/HLA-C248444646NS
KIR2DL2/HLA-C159556161NS
KIR2DL3/HLA-C1106989494NS
KIR2DS2/HLA-C151475353NS
HS: Healthy Subjects; SP: Subjects with Psoriasis vulgaris; KIR: Killer Immunoglobulin-like Receptor; HLA: Human Leukocyte Antigen; p based on X2 test and adjusted p’ based on Holm-Bonferroni correction for multiple comparisons; NS: Not Significant; OR = Odds Ratio; CI: Confidence Interval; Significant differences between groups are in bold. * At least one positive HLA-Bw4 reaction.

Share and Cite

MDPI and ACS Style

Graciano-Machuca, O.; Alvarado-Navarro, A.; Ramírez-Dueñas, M.G.; Villanueva-Quintero, D.G.; Velarde-de la Cruz, E.E.; Machado-Sulbarán, A.C.; Montoya-Buelna, M.; Sánchez-Hernández, P.E. Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population. Genes 2020, 11, 338. https://doi.org/10.3390/genes11030338

AMA Style

Graciano-Machuca O, Alvarado-Navarro A, Ramírez-Dueñas MG, Villanueva-Quintero DG, Velarde-de la Cruz EE, Machado-Sulbarán AC, Montoya-Buelna M, Sánchez-Hernández PE. Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population. Genes. 2020; 11(3):338. https://doi.org/10.3390/genes11030338

Chicago/Turabian Style

Graciano-Machuca, Omar, Anabell Alvarado-Navarro, María Guadalupe Ramírez-Dueñas, Delfina Guadalupe Villanueva-Quintero, Erandi Enif Velarde-de la Cruz, Andrea Carolina Machado-Sulbarán, Margarita Montoya-Buelna, and Pedro Ernesto Sánchez-Hernández. 2020. "Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population" Genes 11, no. 3: 338. https://doi.org/10.3390/genes11030338

APA Style

Graciano-Machuca, O., Alvarado-Navarro, A., Ramírez-Dueñas, M. G., Villanueva-Quintero, D. G., Velarde-de la Cruz, E. E., Machado-Sulbarán, A. C., Montoya-Buelna, M., & Sánchez-Hernández, P. E. (2020). Diversity of KIR/HLA Genotypes and Their Association with Psoriasis Vulgaris in the Western Mexican Population. Genes, 11(3), 338. https://doi.org/10.3390/genes11030338

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop