Optimizing the Phenylalanine Cut-Off Value in a Newborn Screening Program
Abstract
:1. Introduction
2. Materials and Methods
2.1. Subjects
2.2. Specimen Collection, Methods, and Screening Protocol
2.3. Confirmation Analyses and PKU Classification
2.3.1. Fluorimetric Method—S-Phe
2.3.2. Genetic Confirmation
2.3.3. True Positive/False Positive
2.4. Adjustment of the Cut-Off Value
3. Results
3.1. The First Part of the Study
3.1.1. Detailed Description of 16 Patients
3.1.2. Adjustment of the Cut-Off Value
3.2. The Second Part of the Study
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Patient | DBS-Phe (µmol/L) | DBS-Phe (µmol/L)— New Sample | S-Phe (µmol/L) | Genotype (PAH Gene) | APV Allele1/ Allele2 | * PKU Classification | Diet | TP |
---|---|---|---|---|---|---|---|---|
1 | 500 | nd | 569 | NM_000277.1:c[143T>C(;)913-7A>G] | 2.1/0 | cPKU | yes | yes |
2 | 420 | nd | 1118 | NM_000277.2:c[143T>C(;)1222C>T] | 2.1/0 | cPKU | yes | yes |
3 | 550 | nd | 802 | NM_000277.2:c[842C>T(;)1222C>T] | 0.8/0 | cPKU | yes | yes |
4 | 490 | nd | 751 | NM_000277.3:c[473G>A];[473G>A] | 0/0 | cPKU | yes | yes |
5 | 580 | nd | 983 | NM_000277.3:c[473G>A];[473G>A] | 0/0 | cPKU | yes | yes |
6 | 290 | nd | 593 | NM_000277.1:c[442-5C>G(;)842C>T] | 6.2/0.8 | mPKU | yes | yes |
7 | 310 | nd | 241 | NM_000277.2:c[58C>T(;)165T>G] | 0/8.1 | MHP | no | no |
8 | 180 | 200 | 229 | NM_000277.3:c[473G>A(;)827T>C] | 0/10 | MHP | no | no |
9 | 260 | nd | 250 | NM_000277.3:c[1208C>T(;)1222C>T] | 9.3/0 | MHP | no | no |
10 | 150 | 120 | 247 | NM_000277.3:c[678G>C(;)734T>C] | nd/9.9 | MHP | no | no |
11 | 150 | 170 | 194 | / | / | MHP | no | no |
12 | 130 | 180 | 131 | / | / | MHP | no | no |
13 | 130 | 120 | 92 | / | / | / | no | no |
14 | 130 | 130 | 130 | / | / | MHP | no | no |
15 | 180 | 160 | 144 | / | / | MHP | no | no |
16 | 710 | nd | 417 | / | / | GALD | / | / |
Number of newborns | 37,784 | ||||||||
Phe cut-off value (µmol/L) | 120 | 130 | 140 | 150 | 160 | 170 | 180 | 190 | 200 |
Recalls (N) | 108 | 41 | 21 | 16 | 12 | 11 | 11 | 9 | 9 |
False positive (N) | 102 | 35 | 15 | 10 | 6 | 5 | 5 | 3 | 3 |
True positive (N) | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 |
False negative (N) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
True negative (N) | 37,676 | 37,743 | 37,763 | 37,768 | 37,772 | 37,773 | 37,773 | 37,775 | 37,775 |
Detection rate (%) | 0.019 | 0.019 | 0.019 | 0.019 | 0.019 | 0.019 | 0.019 | 0.019 | 0.019 |
Sensitivity (%) | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 |
Specificity (%) | 99.73 | 99.91 | 99.96 | 99.97 | 99.98 | 99.99 | 99.99 | 99.99 | 99.99 |
Positive predictive value (%) | 5.56 | 14.63 | 28.57 | 37.50 | 50.00 | 54.55 | 54.55 | 66.67 | 66.67 |
Negative predictive value (%) | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 |
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Perko, D.; Repic Lampret, B.; Remec, Z.I.; Zerjav Tansek, M.; Drole Torkar, A.; Krhin, B.; Bicek, A.; Oblak, A.; Battelino, T.; Groselj, U. Optimizing the Phenylalanine Cut-Off Value in a Newborn Screening Program. Genes 2022, 13, 517. https://doi.org/10.3390/genes13030517
Perko D, Repic Lampret B, Remec ZI, Zerjav Tansek M, Drole Torkar A, Krhin B, Bicek A, Oblak A, Battelino T, Groselj U. Optimizing the Phenylalanine Cut-Off Value in a Newborn Screening Program. Genes. 2022; 13(3):517. https://doi.org/10.3390/genes13030517
Chicago/Turabian StylePerko, Dasa, Barbka Repic Lampret, Ziga Iztok Remec, Mojca Zerjav Tansek, Ana Drole Torkar, Blaz Krhin, Ajda Bicek, Adrijana Oblak, Tadej Battelino, and Urh Groselj. 2022. "Optimizing the Phenylalanine Cut-Off Value in a Newborn Screening Program" Genes 13, no. 3: 517. https://doi.org/10.3390/genes13030517
APA StylePerko, D., Repic Lampret, B., Remec, Z. I., Zerjav Tansek, M., Drole Torkar, A., Krhin, B., Bicek, A., Oblak, A., Battelino, T., & Groselj, U. (2022). Optimizing the Phenylalanine Cut-Off Value in a Newborn Screening Program. Genes, 13(3), 517. https://doi.org/10.3390/genes13030517