Characteristics of Novel Heterotrophic Nitrification–Aerobic Denitrification Bacteria Bacillus subtilis F4 and Alcaligenes faecalis P4 Isolated from Landfill Leachate Biochemical Treatment System
Abstract
:1. Introduction
2. Materials and Methods
2.1. Medium
2.2. Isolation and Identification
2.3. Performance Evaluation of Isolated Strains
2.4. Factors Affecting N and C Removal Capacity
2.5. Nitrogen Balance
2.6. Nitrogen Removal Functional Genes Analysis
2.7. Performance Evaluation of Immobilized Strains
2.8. Analytical Methods
3. Results and Discussion
3.1. Isolation and Identification of HN-AD Bacteria
3.2. Nitrogen and Carbon Removal Performance of Isolated Bacteria
3.3. Factors Affecting Evaluation Experiment
3.3.1. Effect of pH
3.3.2. Effect of C/N Ratio
3.3.3. Effect of Initial NH4+-N Concentration
3.4. Nitrogen Balance
3.5. Nitrogen Removal Functional Gene Amplification
3.6. N and C Removal Capacity of Immobilized Strains
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
- Miao, L.; Yang, G.; Tao, T.; Peng, Y. Recent advances in nitrogen removal from landfill leachate using biological treatments—A review. J. Environ. Manag. 2019, 235, 178–185. [Google Scholar] [CrossRef]
- Chen, X.; Li, S.; Zhang, W.; Li, S.; Gu, Y.; Ouyang, L. A Newly Isolated Rhodococcus sp. S2 from Landfill Leachate Capable of Heterotrophic Nitrification and Aerobic Denitrification. Water 2024, 16, 431. [Google Scholar] [CrossRef]
- Li, H.; Zhou, S.; Ma, W.; Huang, P.; Huang, G.; Qin, Y.; Xu, B.; Ouyang, H. Long-term performance and microbial ecology of a two-stage PN-ANAMMOX process treating mature landfill leachate. Bioresour. Technol. 2014, 159, 404–411. [Google Scholar] [CrossRef] [PubMed]
- Wydro, U.; Wołejko, E.; Sokołowska, G.; Leszczyński, J.; Jabłońska-Trypuć, A. Investigating Landfill Leachate Influence on Soil Microbial Biodiversity and Its Cytotoxicity. Water 2022, 14, 3634. [Google Scholar] [CrossRef]
- Silva, L.C.F.; Lima, H.S.; Sartoratto, A.; Sousa, M.P.D.; Torres, A.P.R.; Souza, R.S.D.; de Paula, S.O.; Oliveira, V.M.D.; Silva, C.C.D. Effect of salinity in heterotrophic nitrification/aerobic denitrification performed by acclimated microbiota from oil-produced water biological treatment system. Int. Biodeterior. Biodegrad. 2018, 130, 1–7. [Google Scholar] [CrossRef]
- Shoda, M.; Ishikawa, Y. Heterotrophic nitrification and aerobic denitrification of high-strength ammonium in anaerobically digested sludge by Alcaligenes faecalis strain No. 4. J. Biosci. Bioeng. 2014, 117, 737–741. [Google Scholar] [CrossRef] [PubMed]
- Li, J.; Wu, B.; Li, Q.; Zou, Y.; Cheng, Z.; Sun, X.; Xi, B. Ex situ simultaneous nitrification-denitrification and in situ denitrification process for the treatment of landfill leachates. Waste Manag. 2019, 88, 301–308. [Google Scholar] [CrossRef] [PubMed]
- Song, T.; Zhang, X.; Li, J.; Wu, X.; Feng, H.; Dong, W. A review of research progress of heterotrophic nitrification and aerobic denitrification microorganisms (HNADMs). Sci. Total Environ. 2021, 801, 149319. [Google Scholar] [CrossRef]
- Huang, F.; Pan, L.; Lv, N.; Tang, X. Characterization of novel Bacillus strain N31 from mariculture water capable of halophilic heterotrophic nitrification-aerobic denitrification. J. Biosci. Bioeng. 2017, 124, 564–571. [Google Scholar] [CrossRef]
- Sun, Z.; Lv, Y.; Liu, Y.; Ren, R. Removal of nitrogen by heterotrophic nitrification-aerobic denitrification of a novel metal resistant bacterium Cupriavidus sp. S1. Bioresour. Technol. 2016, 220, 142–150. [Google Scholar] [CrossRef]
- Luo, G.; Xu, G.; Tan, H.; Gao, J.; Liu, W. Effect of dissolved oxygen on denitrification using polycaprolactone as both the organic carbon source and the biofilm carrier. Int. Biodeterior. Biodegrad. 2016, 110, 155–162. [Google Scholar] [CrossRef]
- He, X.; Sun, Q.; Xu, T.; Dai, M.; Wei, D. Removal of nitrogen by heterotrophic nitrification-aerobic denitrification of a novel halotolerant bacterium Pseudomonas mendocina TJPU04. Bioprocess Biosyst. Eng. 2019, 42, 853–866. [Google Scholar] [CrossRef]
- Chen, J.; Gu, S.; Hao, H.; Chen, J. Characteristics and metabolic pathway of Alcaligenes sp. TB for simultaneous heterotrophic nitrification-aerobic denitrification. Appl. Microbiol. Biotechnol. 2016, 100, 9787–9794. [Google Scholar] [CrossRef]
- Yang, J.; Feng, L.; Pi, S.; Cui, D.; Ma, F.; Zhao, H.P.; Li, A. A critical review of aerobic denitrification: Insights into the intracellular electron transfer. Sci. Total Environ. 2020, 731, 139080. [Google Scholar] [CrossRef]
- Robertson, L.A.; Kuenen, J.G. Thiosphaera pantotropha gen. nov. sp. nov., a Facultatively Anaerobic, Facultatively Autotrophic Sulphur Bacterium. J. Gen. Microbiol. 1983, 129, 2847–2855. [Google Scholar] [CrossRef]
- Feng, L.; Yang, J.; Ma, F.; Pi, S.; Xing, L.; Li, A. Characterisation of Pseudomonas stutzeri T13 for aerobic denitrification: Stoichiometry and reaction kinetics. Sci. Total Environ. 2020, 717, 135181. [Google Scholar] [CrossRef]
- Song, Z.F.; An, J.; Fu, G.H.; Yang, X.L. Isolation and characterization of an aerobic denitrifying Bacillus sp. YX-6 from shrimp culture ponds. Aquaculture 2011, 319, 188–193. [Google Scholar] [CrossRef]
- Yao, S.; Ni, J.; Ma, T.; Li, C. Heterotrophic nitrification and aerobic denitrification at low temperature by a newly isolated bacterium, Acinetobacter sp. HA2. Bioresour. Technol. 2013, 139, 80–86. [Google Scholar] [CrossRef]
- Zhang, H.; Zhao, Z.; Chen, S.; Kang, P.; Wang, Y.; Feng, J.; Jia, J.; Yan, M.; Wang, Y.; Xu, L. Paracoccus versutus KS293 adaptation to aerobic and anaerobic denitrification: Insights from nitrogen removal, functional gene abundance, and proteomic profiling analysis. Bioresour. Technol. 2018, 260, 321–328. [Google Scholar] [CrossRef]
- Lang, X.; Li, Q.; Ji, M.; Yan, G.; Guo, S. Isolation and niche characteristics in simultaneous nitrification and denitrification application of an aerobic denitrifier, Acinetobacter sp. YS2. Bioresour. Technol. 2020, 302, 122799. [Google Scholar] [CrossRef]
- Fu, G.; Zhao, L.; Huangshen, L.; Wu, J. Isolation and identification of a salt-tolerant aerobic denitrifying bacterial strain and its application to saline wastewater treatment in constructed wetlands. Bioresour. Technol. 2019, 290, 121725. [Google Scholar] [CrossRef]
- Liu, C.; Zhu, L.; Chen, L. Effect of salt and metal accumulation on performance of membrane distillation system and microbial community succession in membrane biofilms. Water Res. 2020, 177, 115805. [Google Scholar] [CrossRef]
- Ye, X.; Peng, T.; Feng, J.; Yang, Q.; Pratush, A.; Xiong, G.; Huang, T.; Hu, Z. A novel dehydrogenase 17beta-HSDx from Rhodococcus sp. P14 with potential application in bioremediation of steroids contaminated environment. J. Hazard. Mater. 2019, 362, 170–177. [Google Scholar] [CrossRef]
- Yao, N.; Du, Y.; Xiong, J.; Xiao, Y.; He, H.; Xie, Z.; Huang, D.; Song, Q.; Chen, J.; Yan, D.; et al. Microbial detoxification of 3,5-xylenol via a novel process with sequential methyl oxidation by Rhodococcus sp. CHJ602. Environ. Res. 2023, 220, 115258. [Google Scholar] [CrossRef]
- Mulla, S.I.; Talwar, M.P.; Bagewadi, Z.K.; Hoskeri, R.S.; Ninnekar, H.Z. Enhanced degradation of 2-nitrotoluene by immobilized cells of Micrococcus sp. strain SMN-1. Chemosphere 2013, 90, 1920–1924. [Google Scholar] [CrossRef]
- Song, J.; He, Q.; Hu, X.; Zhang, W.; Wang, C.; Chen, R.; Wang, H.; Mosa, A. Highly efficient removal of Cr(VI) and Cu(II) by biochar derived from Artemisia argyi stem. Environ. Sci. Pollut. Res. 2019, 26, 13221–13234. [Google Scholar] [CrossRef]
- Jin, R.; Liu, T.; Liu, G.; Zhou, J.; Huang, J.; Wang, A. Simultaneous heterotrophic nitrification and aerobic denitrification by the marine origin bacterium Pseudomonas sp. ADN-42. Appl. Biochem. Biotechnol. 2015, 175, 2000–2011. [Google Scholar] [CrossRef]
- Wei, R.; Hui, C.; Zhang, Y.; Jiang, H.; Zhao, Y.; Du, L. Nitrogen removal characteristics and predicted conversion pathways of a heterotrophic nitrification-aerobic denitrification bacterium, Pseudomonas aeruginosa P-1. Environ. Sci. Pollut. Res. 2021, 28, 7503–7514. [Google Scholar] [CrossRef]
- Silva, L.; Lima, H.S.; Mendes, T.; Sartoratto, A.; Sousa, M.P.; de Souza, R.S.; de Paula, S.O.; de Oliveira, V.M.; Silva, C.C. Physicochemical characterization of Pseudomonas stutzeri UFV5 and analysis of its transcriptome under heterotrophic nitrification/aerobic denitrification pathway induction condition. Sci. Rep. 2020, 10, 2215. [Google Scholar] [CrossRef]
- Zhang, M.; Pan, L.; Su, C.; Liu, L.; Dou, L. Simultaneous aerobic removal of phosphorus and nitrogen by a novel salt-tolerant phosphate-accumulating organism and the application potential in treatment of domestic sewage and aquaculture sewage. Sci. Total Environ. 2021, 758, 143580. [Google Scholar] [CrossRef]
- Chen, R.; Deng, M.; He, X.; Hou, J. Enhancing Nitrate Removal from Freshwater Pond by Regulating Carbon/Nitrogen Ratio. Front. Microbiol. 2017, 8, 1712. [Google Scholar] [CrossRef]
- Zhang, H.; Shi, Y.; Ma, B.; Huang, T.; Zhang, H.; Niu, L.; Liu, X.; Liu, H. Mix-cultured aerobic denitrifying bacteria augmented carbon and nitrogen removal for micro-polluted water: Metabolic activity, coexistence and interactions, and immobilized bacteria for reservoir raw water treatment. Sci. Total Environ. 2022, 838, 156475. [Google Scholar] [CrossRef]
- Song, J.; Li, M.; Wang, C.; Fan, Y.; Li, Y.; Wang, Y.; Zhang, W.; Li, H.; Wang, H. Enhanced treatment of landfill leachate by biochar-based aerobic denitrifying bacteria functional microbial materials: Preparation and performance. Front. Microbiol. 2023, 14, 1139650. [Google Scholar] [CrossRef]
- APHA. Standard Methods for the Examination of Water and Wastewater; American Public Health Association (APHA): Washington, DC, USA, 2005. [Google Scholar]
- Yang, Q.; Yang, T.; Shi, Y.; Xin, Y.; Zhang, L.; Gu, Z.; Li, Y.; Ding, Z.; Shi, G. The nitrogen removal characterization of a cold-adapted bacterium: Bacillus simplex H-b. Bioresour. Technol. 2021, 323, 124554. [Google Scholar] [CrossRef]
- Taylor, S.M.; He, Y.; Zhao, B.; Huang, J. Heterotrophic ammonium removal characteristics of an aerobic heterotrophic nitrifying-denitrifying bacterium, Providencia rettgeri YL. J. Environ. Sci. 2009, 21, 1336–1341. [Google Scholar] [CrossRef]
- Ye, J.; Zhao, B.; An, Q.; Huang, Y.S. Nitrogen removal by Providencia rettgeri strain YL with heterotrophic nitrification and aerobic denitrification. Environ. Technol. 2016, 37, 2206–2213. [Google Scholar] [CrossRef]
- Chen, S.; He, S.; Wu, C.; Du, D. Characteristics of heterotrophic nitrification and aerobic denitrification bacterium Acinetobacter sp. T1 and its application for pig farm wastewater treatment. J. Biosci. Bioeng. 2019, 127, 201–205. [Google Scholar] [CrossRef]
- Yang, J.; Wang, Y.; Chen, H.; Lyu, Y. Ammonium removal characteristics of an acid-resistant bacterium Acinetobacter sp. JR1 from pharmaceutical wastewater capable of heterotrophic nitrification-aerobic denitrification. Bioresour. Technol. 2019, 274, 56–64. [Google Scholar] [CrossRef]
- Zeng, X.; Huang, J.J.; Hua, B.; Champagne, P. Nitrogen removal bacterial strains, MSNA-1 and MSD4, with wide ranges of salinity and pH resistances. Bioresour. Technol. 2020, 310, 123309. [Google Scholar] [CrossRef]
- Liu, Y.; Ai, G.; Miao, L.; Liu, Z. Marinobacter strain NNA5, a newly isolated and highly efficient aerobic denitrifier with zero N2O emission. Bioresour. Technol. 2016, 206, 9–15. [Google Scholar] [CrossRef]
- Carneiro, F.S.L.; Santiago, L.H.; Antonio, D.O.M.T.; Sartoratto, A.; de Paula, S.M.; Suhett, D.S.R.; Oliveira, D.P.S.; Maia, D.O.V.; Canedo, D.S.C. Heterotrophic nitrifying/aerobic denitrifying bacteria: Ammonium removal under different physical-chemical conditions and molecular characterization. J. Environ. Manag. 2019, 248, 109294. [Google Scholar] [CrossRef] [PubMed]
- Ren, Y.X.; Yang, L.; Liang, X. The characteristics of a novel heterotrophic nitrifying and aerobic denitrifying bacterium, Acinetobacter junii YB. Bioresour. Technol. 2014, 171, 1–9. [Google Scholar] [CrossRef]
- Gu, X.; Leng, J.; Zhu, J.; Zhang, K.; Zhao, J.; Wu, P.; Xing, Q.; Tang, K.; Li, X.; Hu, B. Influence mechanism of C/N ratio on heterotrophic nitrification- aerobic denitrification process. Bioresour. Technol. 2022, 343, 126116. [Google Scholar] [CrossRef] [PubMed]
- Yang, X.P.; Wang, S.M.; Zhang, D.W.; Zhou, L.X. Isolation and nitrogen removal characteristics of an aerobic heterotrophic nitrifying-denitrifying bacterium, Bacillus subtilis A1. Bioresour. Technol. 2011, 102, 854–862. [Google Scholar] [CrossRef]
- Xia, L.; Li, X.; Fan, W.; Wang, J. Heterotrophic nitrification and aerobic denitrification by a novel Acinetobacter sp. ND7 isolated from municipal activated sludge. Bioresour. Technol. 2020, 301, 122749. [Google Scholar] [CrossRef]
- Chen, P.; Li, J.; Li, Q.X.; Wang, Y.; Li, S.; Ren, T.; Wang, L. Simultaneous heterotrophic nitrification and aerobic denitrification by bacterium Rhodococcus sp. CPZ24. Bioresour. Technol. 2012, 116, 266–270. [Google Scholar] [CrossRef]
- Chen, H.; Zhou, W.; Zhu, S.; Liu, F.; Qin, L.; Xu, C.; Wang, Z. Biological nitrogen and phosphorus removal by a phosphorus-accumulating bacteria Acinetobacter sp. strain C-13 with the ability of heterotrophic nitrification-aerobic denitrification. Bioresour. Technol. 2021, 322, 124507. [Google Scholar] [CrossRef]
- Zhao, B.; He, Y.L.; Hughes, J.; Zhang, X.F. Heterotrophic nitrogen removal by a newly isolated Acinetobacter calcoaceticus HNR. Bioresour. Technol. 2010, 101, 5194–5200. [Google Scholar] [CrossRef] [PubMed]
- Huang, X.; Jiang, D.; Ni, J.; Xie, D.; Li, Z. Removal of ammonium and nitrate by the hypothermia bacterium Pseudomonas putida Y-9 mainly through assimilation. Environ. Technol. Innov. 2021, 22, 101458. [Google Scholar] [CrossRef]
- Kong, Q.X.; Wang, X.W.; Jin, M.; Shen, Z.Q.; Li, J.W. Development and application of a novel and effective screening method for aerobic denitrifying bacteria. FEMS Microbiol. Lett. 2006, 260, 150–155. [Google Scholar] [CrossRef]
- Zhao, B.; An, Q.; He, Y.L.; Guo, J.S. N2O and N2 production during heterotrophic nitrification by Alcaligenes faecalis strain NR. Bioresour. Technol. 2012, 116, 379–385. [Google Scholar] [CrossRef] [PubMed]
- Zhang, Q.L.; Liu, Y.; Ai, G.M.; Miao, L.L.; Zheng, H.Y.; Liu, Z.P. The characteristics of a novel heterotrophic nitrification-aerobic denitrification bacterium, Bacillus methylotrophicus strain L7. Bioresour. Technol. 2012, 108, 35–44. [Google Scholar] [CrossRef] [PubMed]
- Zheng, H.; Song, Q.; Zhu, Y.; Meng, Q.; Cui, X. Removing ammonia nitrogen from wastewater by immobilized microorganism with reed biochar composite carrier. Chin. J. Environ. Eng. 2019, 13, 310–318. [Google Scholar]
- Yang, Z.; Zhou, Q.; Sun, H.; Jia, L.; Zhao, L.; Wu, W. Metagenomic analyses of microbial structure and metabolic pathway in solid-phase denitrification systems for advanced nitrogen removal of wastewater treatment plant effluent: A pilot-scale study. Water Res. 2021, 196, 117067. [Google Scholar] [CrossRef] [PubMed]
Gene Name | Primer Name | Sequence (5′ to 3′) | Annealing Temperature | Product Size (bp) | References |
---|---|---|---|---|---|
hao | haoF1 haoR3 | TGCGTGGARTGYCAC AGRTARGAKYSGGCAAA | 55 °C | 1485 | [30] |
narG | narGF narGR | GAYATGCAYCCGTT AYCCARTCRTTRTC | 58 °C | 1008 | [30] |
napA | nap1F nap2R | TCTGGACCATGGGCTTCAACCA ACGACGACCGGCCAGCGCAG | 69 °C | 877 | [31] |
nirK | nirK1F nirK5R | GGMATGGTKCCSTGGCA GCCTCGATCAGRTTRTGG | 59 °C | 514 | [30] |
nirS | nirS1F nirS6R | CCTAYTGGCCGCCRCART CGTTGAACTTRCCGGT | 55 °C | 890 | [30] |
norB | norB F norB R | TGCTGTTCCGTCTGGAGAA CGTAGCGACCTTCATAGAGG | 57 °C | 669 | [31] |
nosZ | nosZ F nosZ R | GGTAACCTTGACAACACCGA ATGACGAAGCCGTGAGACA | 56 °C | 1100 | [31] |
Strain | Phylum | Class | Genus | Species | Similarity |
---|---|---|---|---|---|
F1 | Firmicutes | Bacilli | Bacillus | Bacillus thuringiensis | 99% |
F2 (F5/F6) | Bacillus cereus | 99% | |||
F3 | Bacillus paramycoides | 99% | |||
F4 (F7/F8/F9/F10) | Bacillus subtilis | 98% | |||
P1 (P8/P9) | Proteobacteria | Gammaproteobacteria | Acinetobacter | Acinetobacter junii | 99% |
P2 (P10/P11) | Gammaproteobacteria | Providencia | Providencia rettgeri | 99% | |
P3 (P12/P13) | Alphaproteobacteria | Pseudochrobactrum | Pseudochrobactrum asaccharolyticum | 98% | |
P4 | Betaproteobacteria | Alcaligenes | Alcaligenes faecalis | 99% | |
P5(P14/P15) | Gammaproteobacteria | Providencia | Providenciav ermicola | 99% | |
P6 | Gammaproteobacteria | Proteus | Proteus terrae | 99% | |
P7 | Gammaproteobacteria | Proteus | Proteus vulgaris | 99% |
Strain | NH4+-N | NO2−-N | NO3−-N | Biomass-N | N2 | Lost N | |
---|---|---|---|---|---|---|---|
Bacillus subtilis F4 | Initial | 99.5 ± 0.18 | - | - | 10.5 ± 0.37 | ||
Final | 44.8 ± 0.46 | 39.3 ± 0.42 | 23.9 ± 0.35 | 2.1% | |||
Alcaligenes faecalis P4 | Initial | 99.5 ± 0.32 | - | 0.16 ± 0.08 | 9.4 ± 0.48 | ||
Final | 38.9 ± 0.28 | 42.6 ± 0.38 | 25.6 ± 0.52 | 1.8% |
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Zhang, X.; Xu, P.; Lou, Y.; Liu, Y.; Shan, Q.; Xiong, Y.; Wei, H.; Song, J. Characteristics of Novel Heterotrophic Nitrification–Aerobic Denitrification Bacteria Bacillus subtilis F4 and Alcaligenes faecalis P4 Isolated from Landfill Leachate Biochemical Treatment System. Water 2024, 16, 1993. https://doi.org/10.3390/w16141993
Zhang X, Xu P, Lou Y, Liu Y, Shan Q, Xiong Y, Wei H, Song J. Characteristics of Novel Heterotrophic Nitrification–Aerobic Denitrification Bacteria Bacillus subtilis F4 and Alcaligenes faecalis P4 Isolated from Landfill Leachate Biochemical Treatment System. Water. 2024; 16(14):1993. https://doi.org/10.3390/w16141993
Chicago/Turabian StyleZhang, Xuejun, Peng Xu, Yajuan Lou, Yuqi Liu, Qiantong Shan, Yi Xiong, Hua Wei, and Jianyang Song. 2024. "Characteristics of Novel Heterotrophic Nitrification–Aerobic Denitrification Bacteria Bacillus subtilis F4 and Alcaligenes faecalis P4 Isolated from Landfill Leachate Biochemical Treatment System" Water 16, no. 14: 1993. https://doi.org/10.3390/w16141993
APA StyleZhang, X., Xu, P., Lou, Y., Liu, Y., Shan, Q., Xiong, Y., Wei, H., & Song, J. (2024). Characteristics of Novel Heterotrophic Nitrification–Aerobic Denitrification Bacteria Bacillus subtilis F4 and Alcaligenes faecalis P4 Isolated from Landfill Leachate Biochemical Treatment System. Water, 16(14), 1993. https://doi.org/10.3390/w16141993