Predicting CTS Diagnosis and Prognosis Based on Machine Learning Techniques
Abstract
:1. Introduction
1.1. Overview
1.2. Problem Statement
1.3. Paper Contribution
- (1)
- Aggregate data about 80 CTS patients include 40 left hands and 40 right hands with different health status (mild, moderate, and severe) and 80 non-CTS patients with overlapping disease symptoms, including cervical radiculopathysasas, de quervian tendinopathy, and peripheral neuropathy.
- (2)
- We build a Machine Learning model (bagging using random forest) that can distinguish between CTS and non-CTS patients based on BCTQ data and nerve conduction, and compare the results with several traditional machine learning models.
- (3)
- We track and monitor the results after 1, 3, and 6 months through repeating the clinical examination tests and questionnaire.
- (4)
- We build a machine learning model that predicts the probability of the patient improving after the hydro-dissection injection process based on the aggregated data after 3 different periods (1, 3, and 6 months).
- (5)
- We use statistical tests such as ANOVA, t-test, and z-test to distinguish between patient status before and after the injection process and specify the features that have a significant impact on the probability of improvement.
1.4. Paper Organization
2. Related Work
- (1)
- the building of CTS classification models based on one type of data, which affects model performance.
- (2)
- the non-considering of historical data’s impact on CTS classification.
- (3)
- using a single model in CTS classification.
- (4)
- the non-considering of patient health progression.
3. Dataset Description
3.1. Data Description
3.1.1. Dataset Collection
3.1.2. Study Cohorts
3.1.3. Aggregated Features
3.2. Data Preparation
3.2.1. Outlier Detection
3.2.2. Data Imputation
3.2.3. Data Scaling
4. Proposed Work
Proposed Machine Learning Model
5. Results
5.1. Evaluation Metrics
5.2. Predicting CTS Diagnosis
5.3. Predicting Prognosis
5.3.1. Predicting Prognosis after One Month
5.3.2. Predicting Prognosis after Three Months
5.3.3. Predicting Prognosis after Six Months
5.4. Comparison with Other Work
5.5. Statistical Analysis
6. Conclusions and Future Work
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
CTS | Carpal Tunnel Syndrome |
NCS | Nerve Conduction Studies |
SVM | Support Vector Machines |
XGB | Extreme Gradient Boosting |
LR | Logistic Regression |
NB | Naive–Bayes |
DT | Decision Trees |
NN | Neural Network |
KNN | k-Nearest Neighbors |
RF | Random Forest |
SGB | Stochastic Gradient Boosting |
XGB | eXtreme Gradient Boosting |
MLP | Multilayer Perception |
US | Ultrasound |
EDx | Electrodiagnostic |
MNT | Median Nerve Localization |
MRI | Magnetic Resonance Image |
BCTQ | Boston Carpal Tunnel Syndrome Questionnaire |
ROI | Region Of Interest |
CNN | Convolutional Neural Networks |
CSA | Cross-Sectional Area |
SSS | Symptoms Severity Scale |
FSS | Functional Status Scale |
BMI | Body Mass Index |
Appendix A
Appendix A.1. Symptom Severity Scale (11 Items)
1 | 2 | 3 | 4 | 5 | |
1. How severe is the hand or wrist pain that you have at night? | Normal | Slight | Medium | Severe | Normal |
2. How often did your hand or wrist pain wake you up during a typical night in the past two weeks? | Normal | Once | 2 to 3 times | 4 to 5 times | Normal |
3. Do you typically have pain in your hand or wrist during the daytime? | No pain | Slight | Medium | Severe | No pain |
4. How often do you have hand or wrist pain during the daytime? | Normal | 1–2 times/day | 3–5 times/day | More than 5 times | Normal |
5. How long on average does an episode of pain last during the daytime? | Normal | <10 min | 10~60 min Continuous | >60 min | Normal |
6. Do you have numbness (loss of sensation) in your hand? | Normal | Slight | Medium | Severe | Normal |
7. Do you have weakness in your hand or wrist? | Normal | Slight | Medium | Severe | Normal |
8. Do you have tingling sensations in your hand? | Normal | Slight | Medium | Severe | Normal |
9. How severe is the numbness (loss of sensation) or tingling at night? | Normal | Slight | Medium | Severe | Normal |
10. How often did hand numbness or tingling wake you up during a typical night during the past two weeks? | Normal | Once | 2 to 3 times | 4 to 5 times | Normal |
11. Do you have difficulty with the grasping and use of small objects such as keys or pens? | Without difficulty | Little difficulty | Moderately difficult | Very difficult | Without difficulty |
Appendix A.2. Functional Status Scale (8 Items)
No Difficulty | Little Difficulty | Moderate Difficulty | Intense Difficulty | Cannot Perform the Activity at All Due to Hand and Wrist Symptoms | |
Writing | 1 | 2 | 3 | 4 | 5 |
Buttoning of clothes | 1 | 2 | 3 | 4 | 5 |
Holding a book while reading | 1 | 2 | 3 | 4 | 5 |
Gripping of a telephone | 1 | 2 | 3 | 4 | 5 |
Opening of jars | 1 | 2 | 3 | 4 | 5 |
Household chores | 1 | 2 | 3 | 4 | 5 |
Carrying of grocery basket | 1 | 2 | 3 | 4 | 5 |
Bathing and dressing | 1 | 2 | 3 | 4 | 5 |
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Model | Training Score | Testing Score | Accuracy | Precision | Recall | F-Measure | AUC |
---|---|---|---|---|---|---|---|
LR | 0.901 ± 0.001 | 0.900 ± 0.02 | 0.900 ± 0.001 | 0.915 ± 0.002 | 0.901 ± 0.012 | 0.901 ± 0.013 | 0.924 ± 0.010 |
NB | 0.922 ± 0.011 | 0.902 ± 0.001 | 0.903 ± 0.001 | 0.930 ± 0.001 | 0.900 ± 0.012 | 0.917 ± 0.012 | 0.921 ± 0.010 |
SVC | 0.931 ± 0.001 | 0.921 ± 0.011 | 0.920 ± 0.001 | 0.942 ± 0.013 | 0.911 ± 0.001 | 0.922 ± 0.002 | 0.933 ± 0.011 |
MLP | 0.922 ± 0.001 | 0.921 ± 0.001 | 0.923 ± 0.011 | 0.931 ± 0.021 | 0.921 ± 0.011 | 0.961 ± 0.011 | 0.942 ± 0.010 |
DT | 0.952 ± 0.012 | 0.931 ± 0.001 | 0.931 ± 0.002 | 0.940 ± 0.012 | 0.921 ± 0.001 | 0.931 ± 0.002 | 0.932 ± 0.001 |
Proposed | 0.983 ± 0.011 | 0.955 ± 0.001 | 0.955 ± 0.001 | 0.963 ± 0.011 | 0.919 ± 0.012 | 0.933 ± 0.013 | 0.946 ± 0.010 |
Model | Training Score | Testing Score | Accuracy | Precision | Recall | F-Measure | AUC |
---|---|---|---|---|---|---|---|
LR | 0.828 ± 0.001 | 0.815 ± 0.01 | 0.817 ± 0.001 | 0.835 ± 0.002 | 0.805 ± 0.011 | 0.824 ± 0.013 | 0.819 ± 0.010 |
NB | 0.861 ± 0.001 | 0.833 ± 0.011 | 0.828 ± 0.011 | 0.833 ± 0.012 | 0.833 ± 0.001 | 0.828 ± 0.016 | 0.828 ± 0.020 |
SVC | 0.832 ± 0.001 | 0.821 ± 0.011 | 0.8331 ± 0.21 | 0.844 ± 0.013 | 0.8159 ± 0.01 | 0.823 ± 0.002 | 0.822 ± 0.011 |
MLP | 0.842 ± 0.003 | 0.833 ± 0.001 | 0.827 ± 0.011 | 0.835 ± 0.021 | 0.814 ± 0.012 | 0.814 ± 0.019 | 0.801 ± 0.035 |
DT | 0.886 ± 0.002 | 0.855 ± 0.001 | 0.853 ± 0.002 | 0.828 ± 0.012 | 0.859 ± 0.001 | 0.845 ± 0.002 | 0.821 ± 0.001 |
Proposed | 0.916 ± 0.001 | 0.875 ± 0.01 | 0.877 ± 0.001 | 0.875 ± 0.002 | 0.876 ± 0.011 | 0.864 ± 0.013 | 0.839 ± 0.010 |
Model | Training Score | Testing Score | Accuracy | Precision | Recall | F-Measure | AUC |
---|---|---|---|---|---|---|---|
LR | 0.833 ± 0.002 | 0.821 ± 0.001 | 0.825 ± 0.001 | 0.831 ± 0.012 | 0.825 ± 0.002 | 0.831 ± 0.002 | 0.822 ± 0.001 |
NB | 0.852 ±0.001 | 0.824 ± 0.023 | 0.821 ± 0.011 | 0.833 ± 0.001 | 0.823 ± 0.002 | 0.833 ± 0.002 | 0.846 ± 0.001 |
SVC | 0.850 ±0.010 | 0.820 ± 0.001 | 0.831 ± 0.012 | 0.820 ± 0.002 | 0.838 ± 0.021 | 0.818 ± 0.001 | 0.866 ± 0.021 |
MLP | 0.857 ± 0.001 | 0.85 ± 0.002 | 0.832 ± 0.003 | 0.851 ± 0.001 | 0.833 ± 0.002 | 0.844 ± 0.031 | 0.885 ± 0.013 |
DT | 0.882 ± 0.003 | 0.863 ± 0.002 | 0.847 ± 0.021 | 0.855 ± 0.011 | 0.852 ± 0.002 | 0.852 ± 0.029 | 0.900 ± 0.015 |
Proposed | 0.912 ± 0.0021 | 0.901 ± 0.001 | 0.901 ± 0.031 | 0.911 ± 0.022 | 0.900 ± 0.039 | 0.898 ± 0.011 | 0.895 ± 0.011 |
Model | Training Score | Testing Score | Accuracy | Precision | Recall | F-Measure | AUC |
---|---|---|---|---|---|---|---|
LR | 0.836 ± 0.002 | 0.825 ± 0.001 | 0.8231 ± 0.02 | 0.846 ± 0.012 | 0.8012 ± 0.002 | 0.825 ± 0.002 | 0.844 ± 0.001 |
NB | 0.842 ±0.001 | 0.834 ± 0.023 | 0.821 ± 0.011 | 0.813 ± 0.001 | 0.823 ± 0.002 | 0.821 ± 0.002 | 0.835 ± 0.002 |
SVC | 0.850 ±0.010 | 0.830 ± 0.001 | 0.831 ± 0.012 | 0.820 ± 0.002 | 0.818 ± 0.021 | 0.818 ± 0.001 | 0.856 ± 0.011 |
MLP | 0.887 ± 0.001 | 0.85 ± 0.002 | 0.832 ± 0.003 | 0.85 ± 0.001 | 0.833 ± 0.002 | 0.844 ± 0.031 | 0.885 ± 0.033 |
DT | 0.842 ± 0.003 | 0.842 ± 0.002 | 0.849 ± 0.011 | 0.825 ± 0.021 | 0.814 ± 0.002 | 0.824 ± 0.019 | 0.891 ± 0.035 |
Proposed | 0.928 ± 0.0021 | 0.912 ± 0.001 | 0.912 ± 0.031 | 0.898 ± 0.022 | 0.909 ± 0.039 | 0.898 ± 0.011 | 0.903 ± 0.011 |
Reference Year | Models | Dataset | Results | Type | Data Availability |
---|---|---|---|---|---|
[28] | XGB | 761 CTS hands and 254 controls | ACC: 76.6 | EDx | Public data |
[29] | SVM | 46 CTS hands and 19 controls | ACC: 0.9513 | EDx | Provided upon request |
[30] | MNT-DeepSL | 84 CTS hands and 16 controls 16 controls | ACC: 0.90 | US | Private |
[12] | SVM | 65 CTS hands and 57 controls | ACC: 0.901 AUC: 0.926 | US EDx | Private |
Proposed | 160 patients (80 CTS and 80 controls) | ACC = 0.955, AUC = 0.946 | US, EDx BCTQ | Private |
Reference | Models | Dataset | Results and Evaluations | Type | Medical Treatment |
---|---|---|---|---|---|
1916 patients | ACC: 0.718, AUC: 0.791 | BCTQ | Surgery | ||
[36] | XGB | 1916 patients | ACC: 0.718, AUC: 0.791 | BCTQ | Surgery |
[20] | Gradient boosting | 2119 patients | AUC: 0.7229 | BCTQ | Surgery |
Proposed | 80 patients | ACC: 0.912, AUC: 0.903 | BCTQ | Hydrodissection injection |
Measurement | Mild | Moderate | Severe | p Value |
---|---|---|---|---|
Percentage | 25% | 30% | 45% | <0.001 |
Median | 1.1 | 0.7 | 0.4 | |
25th percentile–75th percentile | 0.9–1.3 | 0.6–0.75 | 0.4–0.5 | |
Pairwise comparison | A | A | B |
Parameter | Timing | Mild | Moderate | Severe | Group Time Interaction | |
---|---|---|---|---|---|---|
F | p | |||||
FSS | Initial | 24.6 ± 1.8 | 21.4 ± 2.8 | 24.8 ± 5.6 | 4.964 | 0.024 |
One-Month | 10.8 ± 1.3 | 10.8 ± 1.6 | 16.2 ± 2.2 | |||
Three-Month | 12.6 ± 0.74 | 11.1 ± 1.3 | 17.8 ± 17.8 | |||
Six-Month | 13.4 ± 0.94 | 12.4 ± 1.6 | 19.2 ± 19.1 | |||
SSS | Initial | 33.2 ± 3.4 | 33.8 ± 4.8 | 39.2 ± 5.1 | 9.112 | <0.001 |
One-Month | 14.2 ± 2.1 | 17.2 ± 3.1 | 28.2 ± 6.6 | |||
Three-Month | 18.2 ± 2.8 | 19.7 ± 2.7 | 30.2 ± 6.2 | |||
Six-Month | 19.8 ± 2.8 | 21.5 ± 2.5 | 33.5 ± 6.2 |
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Elseddik, M.; Mostafa, R.R.; Elashry, A.; El-Rashidy, N.; El-Sappagh, S.; Elgamal, S.; Aboelfetouh, A.; El-Bakry, H. Predicting CTS Diagnosis and Prognosis Based on Machine Learning Techniques. Diagnostics 2023, 13, 492. https://doi.org/10.3390/diagnostics13030492
Elseddik M, Mostafa RR, Elashry A, El-Rashidy N, El-Sappagh S, Elgamal S, Aboelfetouh A, El-Bakry H. Predicting CTS Diagnosis and Prognosis Based on Machine Learning Techniques. Diagnostics. 2023; 13(3):492. https://doi.org/10.3390/diagnostics13030492
Chicago/Turabian StyleElseddik, Marwa, Reham R. Mostafa, Ahmed Elashry, Nora El-Rashidy, Shaker El-Sappagh, Shimaa Elgamal, Ahmed Aboelfetouh, and Hazem El-Bakry. 2023. "Predicting CTS Diagnosis and Prognosis Based on Machine Learning Techniques" Diagnostics 13, no. 3: 492. https://doi.org/10.3390/diagnostics13030492
APA StyleElseddik, M., Mostafa, R. R., Elashry, A., El-Rashidy, N., El-Sappagh, S., Elgamal, S., Aboelfetouh, A., & El-Bakry, H. (2023). Predicting CTS Diagnosis and Prognosis Based on Machine Learning Techniques. Diagnostics, 13(3), 492. https://doi.org/10.3390/diagnostics13030492