Anaplasma phagocytophilum and Babesia Species of Sympatric Roe Deer (Capreolus capreolus), Fallow Deer (Dama dama), Sika Deer (Cervus nippon) and Red Deer (Cervus elaphus) in Germany
Abstract
:1. Introduction
2. Results
2.1. Anaplasma phagocytophilum
2.2. Babesia Species
- 18 sequences of B. capreoli from roe deer, with 99%–100% similarity to other GenBank® entries for B. capreoli from roe deer from Germany (e.g., accession number KU351826; [8].
- Three sequences of Babesia sp. EU1 from roe deer, with 100% identity to GenBank® entries for Babesia sp. EU1 from I. ricinus from Spain (KM289158), Ixodes persulcatus from Mongolia (LC005775) and reindeer (Rangifer tarandus) from Germany (KM657247).
- Eight sequences of B. odocoilei-like from three sika deer and five red deer (four wild deer, one farmed deer) showing 99–100% similarity to sequences found in fallow deer in Germany (KU351828) and in red deer in Austria (JN543180).
- Eight sequences from two sika deer and six red deer (two wild deer, four farmed deer) with 100% identity to B. divergens from I. ricinus in Poland (KU748896) and red deer in Austria (KX018019). In addition, sequences obtained from one fallow deer and one sika deer were closely related to both B. capreoli and B. divergens but did not allow for discrimination of the two species, and the sequence from a roe deer was short and could only be identified to Babesia genus level.
2.3. Anaplasma phagocytophilum/Babesia Species Co-Infections
3. Discussion
3.1. Anaplasma phagocytophilum
3.2. Anaplasma phagocytophilum Variants
3.3. Babesia Species
3.4. Co-Infections
4. Materials and Methods
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Disclaimer
References
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Variant | Number of Variants | GenBank® Accession Numbers | ||||
---|---|---|---|---|---|---|
Total | Roe Deer | Fallow Deer | Sika Deer | Red Deer | ||
B | 5 | 0 | 0 | 3 | 2 | KU705180, KU705181, KU705133, KU705136 |
I | 7 | 6 | 0 | 1 | 0 | KU705140, KU705141, KU705184, KU705152, KU705154, KU705158, KU705160 |
J | 1 | 0 | 0 | 1 | 0 | KU705187 |
S | 9 | 0 | 0 | 4 | 5 | KU705178, KU705182, KU705124, KU705128, KU705186, KU705189, KU705131, KU705134, KU705138 |
V | 2 | 1 | 1 | 0 | 0 | KU705198, KU705153 |
W | 13 | 2 | 1 | 4 | 6 | KU705176, KU705177, KU705179, KU705125, KU705127, KU705129, KU705145, KU705197, KU705185, KU705132, KU705135, KU705137, KU705156 |
X | 8 | 6 | 1 | 1 | 0 | KU705142, KU705146, KU705188, KU705149, KU705150, KU705155, KU705159 |
Y | 5 | 5 | 0 | 0 | 0 | KU705143, KU705144, KU705148, KU705151, KU705157 |
16S-24 | 1 | 1 | 0 | 0 | 0 | KU705147 |
16S-25 | 1 | 0 | 0 | 0 | 1 | KU705130 |
16S-26 | 1 | 0 | 0 | 0 | 1 | KU705139 |
16S-30 | 1 | 0 | 0 | 0 | 1 | KU705126 |
Total | 54 | 21 | 3 | 14 | 16 | --- |
Cervid Species and Origin | Number of Deer Sampled, Total (Male, Female) | Age Group, Total (Male, Female) | ||
---|---|---|---|---|
<1 Year | 1–2 Years | >2 Years | ||
Roe deer, wild | 30 (9, 21) | 2 (1, 1) | 22 (6, 16) | 6 (2, 4) |
Fallow deer, wild | 7 (7, 0) | 0 | 3 (3, 0) | 4 (4, 0) |
Sika deer, wild | 22 (17, 5) | 0 | 13 (11, 2) | 9 (6, 3) |
Red deer, wild | 15 (10, 5) | 6 (5, 1) | 2 (1, 1) | 7 (4, 3) |
Combined wild deer | 74 (43, 31) | 8 (6, 2) | 40 (21, 19) | 26 (16, 10) |
Red deer, farmed | 27 (17, 10) | 25 (17, 8) | 0 | 2 (0, 2) |
Total deer | 101 (60, 41) | 33 (23, 10) | 40 (21, 19) | 28 (16, 12) |
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Silaghi, C.; Fröhlich, J.; Reindl, H.; Hamel, D.; Rehbein, S. Anaplasma phagocytophilum and Babesia Species of Sympatric Roe Deer (Capreolus capreolus), Fallow Deer (Dama dama), Sika Deer (Cervus nippon) and Red Deer (Cervus elaphus) in Germany. Pathogens 2020, 9, 968. https://doi.org/10.3390/pathogens9110968
Silaghi C, Fröhlich J, Reindl H, Hamel D, Rehbein S. Anaplasma phagocytophilum and Babesia Species of Sympatric Roe Deer (Capreolus capreolus), Fallow Deer (Dama dama), Sika Deer (Cervus nippon) and Red Deer (Cervus elaphus) in Germany. Pathogens. 2020; 9(11):968. https://doi.org/10.3390/pathogens9110968
Chicago/Turabian StyleSilaghi, Cornelia, Julia Fröhlich, Hubert Reindl, Dietmar Hamel, and Steffen Rehbein. 2020. "Anaplasma phagocytophilum and Babesia Species of Sympatric Roe Deer (Capreolus capreolus), Fallow Deer (Dama dama), Sika Deer (Cervus nippon) and Red Deer (Cervus elaphus) in Germany" Pathogens 9, no. 11: 968. https://doi.org/10.3390/pathogens9110968
APA StyleSilaghi, C., Fröhlich, J., Reindl, H., Hamel, D., & Rehbein, S. (2020). Anaplasma phagocytophilum and Babesia Species of Sympatric Roe Deer (Capreolus capreolus), Fallow Deer (Dama dama), Sika Deer (Cervus nippon) and Red Deer (Cervus elaphus) in Germany. Pathogens, 9(11), 968. https://doi.org/10.3390/pathogens9110968