Genomic Features of Salmonella enterica Subspecies houtenae Serotype 45:g,z51:- Isolated from Multiple Abdominal Abscesses of an African Fat-Tailed Gecko, United States, 2020
Abstract
:1. Introduction
2. Methods
2.1. Bacterial Isolation and Identification
2.2. Antibiotic Susceptibility Test of S. houtenae Isolate
2.3. Whole Genome Sequencing
2.4. Genome Assembly and Annotation
2.5. Phylogenetic Analysis
2.6. Comparative Genome Analysis
2.7. Virulence Gene Profiles
3. Results and Discussion
3.1. Genomic Features
3.2. Antibiotic Resistance
3.3. Genomic Islands (GI) and Salmonella Pathogenicity Islands (SPI)
3.4. Virulence Gene Profile
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Type | Antibiotics | Antibiotic Resistance * |
---|---|---|
Genotype | Aminoglycoside | aac(6′)-laa, |
Fluroquinolone | - | |
Phenotype | Gentamicin (Aminoglycosides) | S |
Streptomycin (Aminoglycosides) | R | |
Amoxicillin clavulanate (B-lactam combination) | S | |
Cefoxitin (Cephems) | S | |
Ceftiofur (Cephems) | S | |
Ceftriaxone (Cephems) | S | |
Ampicillin (Penicillin) | S | |
Imipenem (Carbapenems) | S | |
Sulfisoxazole (Folate pathway antagonist) | S | |
Trimethoprim-sulfamethoxazole (Folate pathway antagonist) | S | |
Chloramphenicol (Phenicols) | S | |
Ciprofloxacin (Quinolones) | S | |
Enterofloxacin (Quinolones) | S | |
Marbofloxacin (Quinolones) | S | |
Nalidixic acid (Quinolones) | S | |
Tetracycline (Tetracyclines) | S | |
Nitrofurantoin (Nitrofurans) | S |
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Hyeon, J.-Y.; Helal, Z.H.; Polkowski, R.; Vyhnal, K.; Mishra, N.; Kim, J.; Risatti, G.R.; Lee, D.-H. Genomic Features of Salmonella enterica Subspecies houtenae Serotype 45:g,z51:- Isolated from Multiple Abdominal Abscesses of an African Fat-Tailed Gecko, United States, 2020. Antibiotics 2021, 10, 1322. https://doi.org/10.3390/antibiotics10111322
Hyeon J-Y, Helal ZH, Polkowski R, Vyhnal K, Mishra N, Kim J, Risatti GR, Lee D-H. Genomic Features of Salmonella enterica Subspecies houtenae Serotype 45:g,z51:- Isolated from Multiple Abdominal Abscesses of an African Fat-Tailed Gecko, United States, 2020. Antibiotics. 2021; 10(11):1322. https://doi.org/10.3390/antibiotics10111322
Chicago/Turabian StyleHyeon, Ji-Yeon, Zeinab H. Helal, Robert Polkowski, Kristin Vyhnal, Neha Mishra, Junwon Kim, Guillermo R. Risatti, and Dong-Hun Lee. 2021. "Genomic Features of Salmonella enterica Subspecies houtenae Serotype 45:g,z51:- Isolated from Multiple Abdominal Abscesses of an African Fat-Tailed Gecko, United States, 2020" Antibiotics 10, no. 11: 1322. https://doi.org/10.3390/antibiotics10111322
APA StyleHyeon, J. -Y., Helal, Z. H., Polkowski, R., Vyhnal, K., Mishra, N., Kim, J., Risatti, G. R., & Lee, D. -H. (2021). Genomic Features of Salmonella enterica Subspecies houtenae Serotype 45:g,z51:- Isolated from Multiple Abdominal Abscesses of an African Fat-Tailed Gecko, United States, 2020. Antibiotics, 10(11), 1322. https://doi.org/10.3390/antibiotics10111322