Recent Advances and Perspectives in Relation to the Metabolomics-Based Study of Diabetic Retinopathy
Abstract
:1. Introduction
2. Analytical Technologies for Metabolomics
2.1. Nuclear Magnetic Resonance Spectroscopy
2.2. Gas Chromatography-Mass Spectrometry
2.3. Liquid Chromatography–Mass Spectrometry
3. Metabolomics in Diabetic Retinopathy
3.1. Blood Metabolomics
3.1.1. Plasma Metabolomics
3.1.2. Serum Metabolomics
3.2. Vitreous Metabolomics
3.3. Aqueous Humor Metabolomics
3.4. Urine Metabolomics
3.5. Fecal Metabolomics
3.6. Other Biological Samples: Metabolomics
4. Metabolomics Studies in DR Models
Category | Animal Models | |
---|---|---|
Induced model | STZ-induced models | |
Alloxan-induced models [90] | ||
Diet-induced models | ||
Oxygen-induced models | ||
Genetic models | Mice model | Ins2Akita [91] |
Non-obese diabetic [92] | ||
Leprdb [93] | ||
Kimba [94] | ||
Akimba [95] | ||
Rat model | Zucker diabetic fatty [96] | |
Otsuka Long-Evans Tokushima Fatty [97] | ||
Biobreeding diabetes-prone [98] | ||
Wistar Bonn Kobori [99] | ||
Goto–Kakizaki [100] | ||
Spontaneously diabetic Torii [96] |
5. Dysregulation of Metabolic Pathways in DR
6. Conclusions and Future Perspectives
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
- Simo-Servat, O.; Hernandez, C.; Simo, R. Usefulness of the vitreous fluid analysis in the translational research of diabetic retinopathy. Mediators Inflamm. 2012, 2012, 872978. [Google Scholar] [PubMed]
- Cheung, N.; Mitchell, P.; Wong, T.Y. Diabetic retinopathy. Lancet 2010, 376, 124–136. [Google Scholar] [PubMed]
- Yau, J.W.; Rogers, S.L.; Kawasaki, R.; Lamoureux, E.L.; Kowalski, J.W.; Bek, T.; Chen, S.J.; Dekker, J.M.; Fletcher, A.; Grauslund, J.; et al. Global prevalence and major risk factors of diabetic retinopathy. Diabetes Care 2012, 35, 556–564. [Google Scholar] [PubMed]
- Li, J.Q.; Welchowski, T.; Schmid, M.; Letow, J.; Wolpers, C.; Pascual-Camps, I.; Holz, F.G.; Finger, R.P. Prevalence, incidence and future projection of diabetic eye disease in Europe: A systematic review and meta-analysis. Eur. J. Epidemiol. 2020, 35, 11–23. [Google Scholar]
- Teo, Z.L.; Tham, Y.C.; Yu, M.; Chee, M.L.; Rim, T.H.; Cheung, N.; Bikbov, M.M.; Wang, Y.X.; Tang, Y.; Lu, Y.; et al. Global Prevalence of Diabetic Retinopathy and Projection of Burden through 2045: Systematic Review and Meta-analysis. Ophthalmology 2021, 128, 1580–1591. [Google Scholar] [CrossRef]
- Lechner, J.; O’Leary, O.E.; Stitt, A.W. The pathology associated with diabetic retinopathy. Vision Res. 2017, 139, 7–14. [Google Scholar]
- Kornblau, I.S.; El-Annan, J.F. Adverse reactions to fluorescein angiography: A comprehensive review of the literature. Surv Ophthalmol 2019, 64, 679–693. [Google Scholar]
- Hitosugi, M.; Omura, K.; Yokoyama, T.; Kawato, H.; Motozawa, Y.; Nagai, T.; Tokudome, S. An autopsy case of fatal anaphylactic shock following fluorescein angiography: A case report. Med. Sci. Law. 2004, 44, 264–265. [Google Scholar] [CrossRef]
- Ascaso, F.J.; Tiestos, M.T.; Navales, J.; Iturbe, F.; Palomar, A.; Ayala, J.I. Fatal acute myocardial infarction after intravenous fluorescein angiography. Retina (Philadelphia, Pa.) 1993, 13, 238–239. [Google Scholar] [CrossRef]
- Mohamed, Q.; Gillies, M.C.; Wong, T.Y. Management of diabetic retinopathy: A systematic review. JAMA. 2007, 298, 902–916. [Google Scholar] [CrossRef]
- Simo, R.; Hernandez, C. Intravitreous anti-VEGF for diabetic retinopathy: Hopes and fears for a new therapeutic strategy. Diabetologia 2008, 51, 1574–1580. [Google Scholar] [PubMed]
- Simo, R.; Hernandez, C. Advances in the medical treatment of diabetic retinopathy. Diabetes care 2009, 32, 1556–1562. [Google Scholar] [PubMed]
- Tan, T.E.; Wong, T.Y. Diabetic retinopathy: Looking forward to 2030. Front. Endocrinol. 2022, 13, 1077669. [Google Scholar]
- Lind, M.; Pivodic, A.; Svensson, A.M.; Olafsdottir, A.F.; Wedel, H.; Ludvigsson, J. HbA1c level as a risk factor for retinopathy and nephropathy in children and adults with type 1 diabetes: Swedish population based cohort study. BMJ 2019, 366, l4894. [Google Scholar] [CrossRef]
- Dunn, W.B.; Broadhurst, D.I.; Atherton, H.J.; Goodacre, R.; Griffin, J.L. Systems level studies of mammalian metabolomes: The roles of mass spectrometry and nuclear magnetic resonance spectroscopy. Chem. Soc. Rev. 2011, 40, 387–426. [Google Scholar]
- Jorge, T.F.; Rodrigues, J.A.; Caldana, C.; Schmidt, R.; van Dongen, J.T.; Thomas-Oates, J.; Antonio, C. Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress. Mass Spectrom. Rev. 2016, 35, 620–649. [Google Scholar]
- Gonzalez-Pena, D.; Brennan, L. Recent Advances in the Application of Metabolomics for Nutrition and Health. Annu. Rev. Food Sci. Technol. 2019, 10, 479–519. [Google Scholar] [CrossRef]
- Wishart, D.S. Emerging applications of metabolomics in drug discovery and precision medicine. Nat. Rev. Drug Discov. 2016, 15, 473–484. [Google Scholar]
- Johnson, C.H.; Ivanisevic, J.; Siuzdak, G. Metabolomics: Beyond biomarkers and towards mechanisms. Nat. Rev. Mol. Cell Biol. 2016, 17, 451–459. [Google Scholar]
- Shao, Y.; Le, W. Recent advances and perspectives of metabolomics-based investigations in Parkinson’s disease. Mol. Neurodegener 2019, 14, 1–12. [Google Scholar]
- Kaushik, A.K.; DeBerardinis, R.J. Applications of metabolomics to study cancer metabolism. Biochim. Biophys. Acta Rev. Cancer 2018, 1870, 2–14. [Google Scholar] [PubMed]
- Nagana Gowda, G.A.; Raftery, D. NMR-Based Metabolomics. Adv. Exp. Med. Biol. 2021, 1280, 19–37. [Google Scholar] [PubMed]
- Markley, J.L.; Bruschweiler, R.; Edison, A.S.; Eghbalnia, H.R.; Powers, R.; Raftery, D.; Wishart, D.S. The future of NMR-based metabolomics. Curr. Opin. Biotechnol. 2017, 43, 34–40. [Google Scholar] [CrossRef] [PubMed]
- Li, X.; Cai, S.; He, Z.; Reilly, J.; Zeng, Z.; Strang, N.; Shu, X. Metabolomics in Retinal Diseases: An Update. Biology 2021, 10, 944. [Google Scholar] [CrossRef]
- Tsujimoto, T.; Yoshitomi, T.; Maruyama, T.; Yamamoto, Y.; Hakamatsuka, T.; Uchiyama, N. (13)C-NMR-based metabolic fingerprinting of Citrus-type crude drugs. J. Pharm. Biomed. Anal. 2018, 161, 305–312. [Google Scholar] [CrossRef]
- Columbus, I.; Ghindes-Azaria, L.; Chen, R.; Yehezkel, L.; Redy-Keisar, O.; Fridkin, G.; Amir, D.; Marciano, D.; Drug, E.; Gershonov, E.; et al. Studying Lipophilicity Trends of Phosphorus Compounds by (31)P-NMR Spectroscopy: A Powerful Tool for the Design of P-Containing Drugs. J. Med. Chem. 2022, 65, 8511–8524. [Google Scholar] [CrossRef]
- Goudar, C.; Biener, R.; Boisart, C.; Heidemann, R.; Piret, J.; de Graaf, A.; Konstantinov, K. Metabolic flux analysis of CHO cells in perfusion culture by metabolite balancing and 2D [13C, 1H] COSY NMR spectroscopy. Metab. Eng. 2010, 12, 138–149. [Google Scholar] [CrossRef]
- Bingol, K.; Zhang, F.; Bruschweiler-Li, L.; Brüschweiler, R. Quantitative analysis of metabolic mixtures by two-dimensional 13C constant-time TOCSY NMR spectroscopy. Anal. Chem. 2013, 85, 6414–6420. [Google Scholar] [CrossRef]
- Amberg, A.; Riefke, B.; Schlotterbeck, G.; Ross, A.; Senn, H.; Dieterle, F.; Keck, M. NMR and MS Methods for Metabolomics. Methods Mol. Biol. 2017, 1641, 229–258. [Google Scholar]
- Ghosh, S.; Sengupta, A.; Chandra, K. SOFAST-HMQC-an efficient tool for metabolomics. Anal. Bioanal. Chem. 2017, 409, 6731–6738. [Google Scholar] [CrossRef]
- Ribay, V.; Praud, C.; Letertre, M.P.M.; Dumez, J.N.; Giraudeau, P. Hyperpolarized NMR metabolomics. Curr. Opin. Chem. Biol. 2023, 74, 102307. [Google Scholar] [CrossRef]
- Morimoto, D.; Walinda, E.; Yamamoto, A.; Scheler, U.; Sugase, K. Rheo-NMR Spectroscopy for Cryogenic-Probe-Equipped NMR Instruments to Monitor Protein Aggregation. Curr. Protoc. 2022, 2, e617. [Google Scholar] [CrossRef] [PubMed]
- Spagou, K.; Theodoridis, G.; Wilson, I.; Raikos, N.; Greaves, P.; Edwards, R.; Nolan, B.; Klapa, M.I. A GC-MS metabolic profiling study of plasma samples from mice on low- and high-fat diets. J. Chromatogr B. 2011, 879, 1467–1475. [Google Scholar] [CrossRef] [PubMed]
- Peterson, A.C.; Balloon, A.J.; Westphall, M.S.; Coon, J.J. Development of a GC/Quadrupole-Orbitrap mass spectrometer, part II: New approaches for discovery metabolomics. Anal. Chem. 2014, 86, 10044–10051. [Google Scholar] [CrossRef]
- Fiehn, O. Metabolomics by Gas Chromatography-Mass Spectrometry: Combined Targeted and Untargeted Profiling. Curr. Protoc. Mol. Biol. 2016, 114, 21.33.1–21.33.11. [Google Scholar] [CrossRef] [PubMed]
- Beale, D.J.; Pinu, F.R.; Kouremenos, K.A.; Poojary, M.M.; Narayana, V.K.; Boughton, B.A.; Kanojia, K.; Dayalan, S.; Jones, O.A.H.; Dias, D.A. Review of recent developments in GC-MS approaches to metabolomics-based research. Metabolomics 2018, 14, 1–31. [Google Scholar]
- Lotti, C.; Rubert, J.; Fava, F.; Tuohy, K.; Mattivi, F.; Vrhovsek, U. Development of a fast and cost-effective gas chromatography-mass spectrometry method for the quantification of short-chain and medium-chain fatty acids in human biofluids. Anal. Bioanal. Chem. 2017, 409, 5555–5567. [Google Scholar] [CrossRef]
- Lima, V.F.; Erban, A.; Daubermann, A.G.; Freire, F.B.S.; Porto, N.P.; Cândido-Sobrinho, S.A.; Medeiros, D.B.; Schwarzländer, M.; Fernie, A.R.; Dos Anjos, L.; et al. Establishment of a GC-MS-based (13) C-positional isotopomer approach suitable for investigating metabolic fluxes in plant primary metabolism. Plant J. 2021, 108, 1213–1233. [Google Scholar] [CrossRef]
- Zhao, X.; Chen, M.; Zhao, Y.; Zha, L.; Yang, H.; Wu, Y. GC-MS-Based Nontargeted and Targeted Metabolic Profiling Identifies Changes in the Lentinula edodes Mycelial Metabolome under High-Temperature Stress. Int. J. Mol. Sci. 2019, 20, 2330. [Google Scholar] [CrossRef]
- Xie, H.; Wang, R.; Xie, L.; Wang, X.; Liu, C. Study on the pathogenesis and prevention strategies of kidney stones based on GC-MS combined with metabolic pathway analysis. Rapid Commun. Mass Spectrom 2022, 36, e9387. [Google Scholar] [CrossRef]
- Zhou, B.; Xiao, J.F.; Tuli, L.; Ressom, H.W. LC-MS-based metabolomics. Mol. Biosyst. 2012, 8, 470–481. [Google Scholar] [CrossRef] [PubMed]
- Stoll, D.R.; Harmes, D.C.; Staples, G.O.; Potter, O.G.; Dammann, C.T.; Guillarme, D.; Beck, A. Development of Comprehensive Online Two-Dimensional Liquid Chromatography/Mass Spectrometry Using Hydrophilic Interaction and Reversed-Phase Separations for Rapid and Deep Profiling of Therapeutic Antibodies. Anal. Chem. 2018, 90, 5923–5929. [Google Scholar] [CrossRef] [PubMed]
- Country, M.W. Retinal metabolism: A comparative look at energetics in the retina. Brain Res. 2017, 1672, 50–57. [Google Scholar] [CrossRef]
- Barba, I.; Garcia-Ramírez, M.; Hernández, C.; Alonso, M.A.; Masmiquel, L.; García-Dorado, D.; Simó, R. Metabolic fingerprints of proliferative diabetic retinopathy: An 1H-NMR-based metabonomic approach using vitreous humor. Investig. Ophthalmol. Vis. Sci. 2010, 51, 4416–4421. [Google Scholar] [CrossRef] [PubMed]
- Li, X.; Luo, X.; Lu, X.; Duan, J.; Xu, G. Metabolomics study of diabetic retinopathy using gas chromatography-mass spectrometry: A comparison of stages and subtypes diagnosed by Western and Chinese medicine. Mol. Biosyst. 2011, 7, 2228–2237. [Google Scholar] [CrossRef]
- Xia, J.F.; Wang, Z.H.; Liang, Q.L.; Wang, Y.M.; Li, P.; Luo, G.A. Correlations of six related pyrimidine metabolites and diabetic retinopathy in Chinese type 2 diabetic patients. Clin. Chim. Acta 2011, 412, 940–945. [Google Scholar] [CrossRef]
- Peng, L.Y.; Sun, B.; Liu, M.M.; Huang, J.; Liu, Y.J.; Xie, Z.P.; He, J.L.; Chen, L.M.; Wang, D.W.; Zhu, Y.; et al. Plasma metabolic profile reveals PGF2 alpha protecting against non-proliferative diabetic retinopathy in patients with type 2 diabetes. Biochem. Biophys. Res. Commun. 2018, 496, 1276–1283. [Google Scholar] [CrossRef]
- Rhee, S.Y.; Jung, E.S.; Park, H.M.; Jeong, S.J.; Kim, K.; Chon, S.; Yu, S.Y.; Woo, J.T.; Lee, C.H. Plasma glutamine and glutamic acid are potential biomarkers for predicting diabetic retinopathy. Metabolomics 2018, 14, 89. [Google Scholar] [CrossRef]
- Sumarriva, K.; Uppal, K.; Ma, C.; Herren, D.J.; Wang, Y.; Chocron, I.M.; Warden, C.; Mitchell, S.L.; Burgess, L.G.; Goodale, M.P.; et al. Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. Investig. Ophthalmol. Vis. Sci. 2019, 60, 3119–3126. [Google Scholar] [CrossRef]
- Zhu, X.R.; Yang, F.Y.; Lu, J.; Zhang, H.R.; Sun, R.; Zhou, J.B.; Yang, J.K. Plasma metabolomic profiling of proliferative diabetic retinopathy. Nutr. Metab. 2019, 16, 37. [Google Scholar] [CrossRef]
- Sun, Y.; Zou, H.; Li, X.; Xu, S.; Liu, C. Plasma Metabolomics Reveals Metabolic Profiling For Diabetic Retinopathy and Disease Progression. Front. Endocrinol. 2021, 12, 757088. [Google Scholar] [CrossRef] [PubMed]
- Ding, C.; Wang, N.; Wang, Z.; Yue, W.; Li, B.; Zeng, J.; Yoshida, S.; Yang, Y.; Zhou, Y. Integrated Analysis of Metabolomics and Lipidomics in Plasma of T2DM Patients with Diabetic Retinopathy. Pharmaceutics 2022, 14, 2751. [Google Scholar] [CrossRef] [PubMed]
- Peters, K.S.; Rivera, E.; Warden, C.; Harlow, P.A.; Mitchell, S.L.; Calcutt, M.W.; Samuels, D.C.; Brantley, M.A., Jr. Plasma Arginine and Citrulline are Elevated in Diabetic Retinopathy. Am. J. Ophthalmol. 2022, 235, 154–162. [Google Scholar] [CrossRef] [PubMed]
- Wang, H.; Li, S.; Wang, C.; Wang, Y.; Fang, J.; Liu, K. Plasma and Vitreous Metabolomics Profiling of Proliferative Diabetic Retinopathy. Investig. Ophthalmol. Vis. Sci. 2022, 63, 17. [Google Scholar] [CrossRef] [PubMed]
- Wang, Z.; Tang, J.; Jin, E.; Ren, C.; Li, S.; Zhang, L.; Zhong, Y.; Cao, Y.; Wang, J.; Zhou, W.; et al. Metabolomic comparison followed by cross-validation of enzyme-linked immunosorbent assay to reveal potential biomarkers of diabetic retinopathy in Chinese with type 2 diabetes. Front. Endocrinol. 2022, 13, 986303. [Google Scholar] [CrossRef]
- Munipally, P.K.; Agraharm, S.G.; Valavala, V.K.; Gundae, S.; Turlapati, N.R. Evaluation of indoleamine 2,3-dioxygenase expression and kynurenine pathway metabolites levels in serum samples of diabetic retinopathy patients. Arch. Physiol. Biochem. 2011, 117, 254–258. [Google Scholar] [CrossRef]
- Curovic, V.R.; Suvitaival, T.; Mattila, I.; Ahonen, L.; Trošt, K.; Theilade, S.; Hansen, T.W.; Legido-Quigley, C.; Rossing, P. Circulating Metabolites and Lipids Are Associated to Diabetic Retinopathy in Individuals With Type 1 Diabetes. Diabetes 2020, 69, 2217–2226. [Google Scholar] [CrossRef]
- Xuan, Q.; Ouyang, Y.; Wang, Y.; Wu, L.; Li, H.; Luo, Y.; Zhao, X.; Feng, D.; Qin, W.; Hu, C.; et al. Multiplatform Metabolomics Reveals Novel Serum Metabolite Biomarkers in Diabetic Retinopathy Subjects. Adv. Sci. 2020, 7, 2001714. [Google Scholar] [CrossRef]
- Yun, J.H.; Kim, J.M.; Jeon, H.J.; Oh, T.; Choi, H.J.; Kim, B.J. Metabolomics profiles associated with diabetic retinopathy in type 2 diabetes patients. PLoS ONE 2020, 15, e0241365. [Google Scholar] [CrossRef]
- Quek, D.Q.Y.; He, F.; Sultana, R.; Banu, R.; Chee, M.L.; Nusinovici, S.; Thakur, S.; Qian, C.; Cheng, C.Y.; Wong, T.Y.; et al. Novel Serum and Urinary Metabolites Associated with Diabetic Retinopathy in Three Asian Cohorts. Metabolites 2021, 11, 614. [Google Scholar] [CrossRef]
- Zuo, J.; Lan, Y.; Hu, H.; Hou, X.; Li, J.; Wang, T.; Zhang, H.; Zhang, N.; Guo, C.; Peng, F.; et al. Metabolomics-based multidimensional network biomarkers for diabetic retinopathy identification in patients with type 2 diabetes mellitus. BMJ Open Diabetes Res. Care 2021, 9, e001443. [Google Scholar] [CrossRef] [PubMed]
- Guo, C.; Jiang, D.; Xu, Y.; Peng, F.; Zhao, S.; Li, H.; Jin, D.; Xu, X.; Xia, Z.; Che, M.; et al. High-Coverage Serum Metabolomics Reveals Metabolic Pathway Dysregulation in Diabetic Retinopathy: A Propensity Score-Matched Study. Front. Mol. Biosci. 2022, 9, 822647. [Google Scholar] [CrossRef] [PubMed]
- Li, J.; Guo, C.; Wang, T.; Xu, Y.; Peng, F.; Zhao, S.; Li, H.; Jin, D.; Xia, Z.; Che, M.; et al. Interpretable machine learning-derived nomogram model for early detection of diabetic retinopathy in type 2 diabetes mellitus: A widely targeted metabolomics study. Nutr. Diabetes 2022, 12, 36. [Google Scholar] [CrossRef] [PubMed]
- Wang, Z.; Tang, J.; Jin, E.; Zhong, Y.; Zhang, L.; Han, X.; Liu, J.; Cheng, Y.; Hou, J.; Shi, X.; et al. Serum Untargeted Metabolomics Reveal Potential Biomarkers of Progression of Diabetic Retinopathy in Asians. Front. Mol. Biosci. 2022, 9, 871291. [Google Scholar] [CrossRef]
- Yang, J.; Liu, D.; Liu, Z. Integration of Metabolomics and Proteomics in Exploring the Endothelial Dysfunction Mechanism Induced by Serum Exosomes From Diabetic Retinopathy and Diabetic Nephropathy Patients. Front. Endocrinol. 2022, 13, 830466. [Google Scholar] [CrossRef]
- Shen, Y.; Wang, H.; Fang, J.; Liu, K.; Xu, X. Novel insights into the mechanisms of hard exudate in diabetic retinopathy: Findings of serum lipidomic and metabolomics profiling. Heliyon 2023, 9, e15123. [Google Scholar] [CrossRef]
- Lin, H.T.; Cheng, M.L.; Lo, C.J.; Lin, G.; Lin, S.F.; Yeh, J.T.; Ho, H.Y.; Lin, J.R.; Liu, F.C. (1)H Nuclear Magnetic Resonance (NMR)-Based Cerebrospinal Fluid and Plasma Metabolomic Analysis in Type 2 Diabetic Patients and Risk Prediction for Diabetic Microangiopathy. J. Clin. Med. 2019, 8, 874. [Google Scholar] [CrossRef]
- Kar, S.S.; Maity, S.P. Automatic Detection of Retinal Lesions for Screening of Diabetic Retinopathy. IEEE. Trans. Biomed. Eng. 2018, 65, 608–618. [Google Scholar] [CrossRef]
- Funatsu, H.; Yamashita, T.; Yamashita, H. Vitreous fluid biomarkers. Adv. Clin. Chem. 2006, 42, 111–166. [Google Scholar]
- Haines, N.R.; Manoharan, N.; Olson, J.L.; D’Alessandro, A.; Reisz, J.A. Metabolomics Analysis of Human Vitreous in Diabetic Retinopathy and Rhegmatogenous Retinal Detachment. J. Proteome Res. 2018, 17, 2421–2427. [Google Scholar] [CrossRef]
- Wang, H.; Fang, J.; Chen, F.; Sun, Q.; Xu, X.; Lin, S.H.; Liu, K. Metabolomic profile of diabetic retinopathy: A GC-TOFMS-based approach using vitreous and aqueous humor. Acta diabetologica 2020, 57, 41–51. [Google Scholar] [CrossRef] [PubMed]
- Tomita, Y.; Cagnone, G.; Fu, Z.; Cakir, B.; Kotoda, Y.; Asakage, M.; Wakabayashi, Y.; Hellström, A.; Joyal, J.S.; Talukdar, S.; et al. Vitreous metabolomics profiling of proliferative diabetic retinopathy. Diabetologia 2021, 64, 70–82. [Google Scholar] [CrossRef] [PubMed]
- Pietrowska, K.; Dmuchowska, D.A.; Krasnicki, P.; Bujalska, A.; Samczuk, P.; Parfieniuk, E.; Kowalczyk, T.; Wojnar, M.; Mariak, Z.; Kretowski, A.; et al. An exploratory LC-MS-based metabolomics study reveals differences in aqueous humor composition between diabetic and non-diabetic patients with cataract. Electrophoresis 2018, 39, 1233–1240. [Google Scholar] [CrossRef] [PubMed]
- Kunikata, H.; Ida, T.; Sato, K.; Aizawa, N.; Sawa, T.; Tawarayama, H.; Murayama, N.; Fujii, S.; Akaike, T.; Nakazawa, T. Metabolomic profiling of reactive persulfides and polysulfides in the aqueous and vitreous humors. Sci. Rep. 2017, 7, 41984. [Google Scholar] [CrossRef]
- Jin, H.; Zhu, B.; Liu, X.; Jin, J.; Zou, H. Metabolic characterization of diabetic retinopathy: An (1)H-NMR-based metabolomic approach using human aqueous humor. J. Pharm. Biomed. Anal. 2019, 174, 414–421. [Google Scholar] [CrossRef]
- Khamis, M.M.; Adamko, D.J.; El-Aneed, A. Mass spectrometric based approaches in urine metabolomics and biomarker discovery. Mass Spectrom. Rev. 2017, 36, 115–134. [Google Scholar] [CrossRef]
- Wang, X.; Li, Y.; Xie, M.; Deng, L.; Zhang, M.; Xie, X. Urine metabolomics study of Bushen Huoxue Prescription on diabetic retinopathy rats by UPLC-Q-exactive Orbitrap-MS. Biomed. Chromatogr. 2020, 34, e4792. [Google Scholar] [CrossRef]
- Quan, W.; Jiao, Y.; Xue, C.; Li, Y.; Liu, G.; He, Z.; Qin, F.; Zeng, M.; Chen, J. The Effect of Exogenous Free Nε-(Carboxymethyl)Lysine on Diabetic-Model Goto-Kakizaki Rats: Metabolomics Analysis in Serum and Urine. J. Agric. Food Chem. 2021, 69, 783–793. [Google Scholar] [CrossRef]
- Iatcu, C.O.; Steen, A.; Covasa, M. Gut Microbiota and Complications of Type-2 Diabetes. Nutrients 2021, 14, 166. [Google Scholar]
- Liu, K.; Zou, J.; Fan, H.; Hu, H.; You, Z. Causal effects of gut microbiota on diabetic retinopathy: A Mendelian randomization study. Front. Immunol. 2022, 13, 930318. [Google Scholar] [CrossRef]
- Zierer, J.; Jackson, M.A.; Kastenmüller, G.; Mangino, M.; Long, T.; Telenti, A.; Mohney, R.P.; Small, K.S.; Bell, J.T.; Steves, C.J.; et al. The fecal metabolome as a functional readout of the gut microbiome. Nat. Genet. 2018, 50, 790–795. [Google Scholar] [CrossRef] [PubMed]
- Li, L.; Yang, K.; Li, C.; Zhang, H.; Yu, H.; Chen, K.; Yang, X.; Liu, L. Metagenomic shotgun sequencing and metabolomic profiling identify specific human gut microbiota associated with diabetic retinopathy in patients with type 2 diabetes. Front. Immunol. 2022, 13, 943325. [Google Scholar] [CrossRef] [PubMed]
- Ye, P.; Zhang, X.; Xu, Y.; Xu, J.; Song, X.; Yao, K. Alterations of the Gut Microbiome and Metabolome in Patients With Proliferative Diabetic Retinopathy. Front. Immunol. 2021, 12, 667632. [Google Scholar] [CrossRef] [PubMed]
- Zhou, Z.; Zheng, Z.; Xiong, X.; Chen, X.; Peng, J.; Yao, H.; Pu, J.; Chen, Q.; Zheng, M. Gut Microbiota Composition and Fecal Metabolic Profiling in Patients With Diabetic Retinopathy. Front. Cell Dev. Biol. 2021, 9, 732204. [Google Scholar] [CrossRef]
- Wang, R.; Jian, Q.; Hu, G.; Du, R.; Xu, X.; Zhang, F. Integrated Metabolomics and Transcriptomics Reveal Metabolic Patterns in Retina of STZ-Induced Diabetic Retinopathy Mouse Model. Metabolites 2022, 12, 1245. [Google Scholar] [CrossRef]
- Olivares, A.M.; Althoff, K.; Chen, G.F.; Wu, S.; Morrisson, M.A.; DeAngelis, M.M.; Haider, N. Animal Models of Diabetic Retinopathy. Curr. Diab. Rep. 2017, 17, 93. [Google Scholar] [CrossRef]
- Preguiça, I.; Alves, A.; Nunes, S.; Gomes, P.; Fernandes, R.; Viana, S.D.; Reis, F. Diet-Induced Rodent Models of Diabetic Peripheral Neuropathy, Retinopathy and Nephropathy. Nutrients 2020, 12, 250. [Google Scholar] [CrossRef]
- Baig, M.A.; Panchal, S.S. Streptozotocin-Induced Diabetes Mellitus in Neonatal Rats: An Insight into its Applications to Induce Diabetic Complications. Curr. Diab. Rev. 2019, 16, 26–39. [Google Scholar]
- Lv, K.; Ying, H.; Hu, G.; Hu, J.; Jian, Q.; Zhang, F. Integrated multi-omics reveals the activated retinal microglia with intracellular metabolic reprogramming contributes to inflammation in STZ-induced early diabetic retinopathy. Front. Immunol. 2022, 13, 942768. [Google Scholar] [CrossRef]
- Ighodaro, O.M.; Adeosun, A.M.; Akinloye, O.A. Alloxan-induced diabetes, a common model for evaluating the glycemic-control potential of therapeutic compounds and plants extracts in experimental studies. Medicina 2017, 53, 365–374. [Google Scholar] [CrossRef]
- Sheskey, S.R.; Antonetti, D.A.; Rentería, R.C.; Lin, C.-M. Correlation of Retinal Structure and Visual Function Assessments in Mouse Diabetes Models. Investig. Ophthalmol. Vis. Sci. 2021, 62, 20. [Google Scholar] [CrossRef] [PubMed]
- Aubin, A.-M.; Lombard-Vadnais, F.; Collin, R.; Aliesky, H.A.; McLachlan, S.M.; Lesage, S. The NOD Mouse Beyond Autoimmune Diabetes. Front. Immunol. 2022, 13, 874769. [Google Scholar] [PubMed]
- Nadif, R.; Dilworth, M.R.; Sibley, C.P.; Baker, P.N.; Davidge, S.T.; Gibson, J.M.; Aplin, J.D.; Westwood, M. The Maternal Environment Programs Postnatal Weight Gain and Glucose Tolerance of Male Offspring, but Placental and Fetal Growth Are Determined by Fetal Genotype in theLeprdb/+ Model of Gestational Diabetes. Endocrinology 2015, 156, 360–366. [Google Scholar] [CrossRef] [PubMed]
- Ali Rahman, I.S.; Li, C.-R.; Lai, C.-M.; Rakoczy, E.P. In VivoMonitoring of VEGF-Induced Retinal Damage in the Kimba Mouse Model of Retinal Neovascularization. Curr. Eye Res. 2011, 36, 654–662. [Google Scholar] [CrossRef]
- Van Hove, I.; De Groef, L.; Boeckx, B.; Modave, E.; Hu, T.-T.; Beets, K.; Etienne, I.; Van Bergen, T.; Lambrechts, D.; Moons, L.; et al. Single-cell transcriptome analysis of the Akimba mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy. Diabetologia 2020, 63, 2235–2248. [Google Scholar] [CrossRef]
- Katsuda, Y.; Ohta, T.; Miyajima, K.; Kemmochi, Y.; Sasase, T.; Tong, B.; Shinohara, M.; Yamada, T. Diabetic Complications in Obese Type 2 Diabetic Rat Models. Exp. Anim. 2014, 63, 121–132. [Google Scholar] [CrossRef]
- Lu, Z.Y.; Bhutto, I.A.; Amemiya, T. Retinal changes in Otsuka long-evans Tokushima Fatty rats (spontaneously diabetic rat)–possibility of a new experimental model for diabetic retinopathy. Jpn. J. Ophthalmol. 2003, 47, 28–35. [Google Scholar] [CrossRef]
- Wallis, R.H.; Wang, K.; Marandi, L.; Hsieh, E.; Ning, T.; Chao, G.Y.C.; Sarmiento, J.; Paterson, A.D.; Poussier, P. Type 1 Diabetes in the BB Rat: A Polygenic Disease. Diabetes 2009, 58, 1007–1017. [Google Scholar] [CrossRef]
- Tsuji, N.; Matsuura, T.; Ozaki, K.; Sano, T.; Narama, I. Diabetic retinopathy and choroidal angiopathy in diabetic rats (WBN/Kob). Exp. Anim. 2009, 58, 481–487. [Google Scholar] [CrossRef]
- Berdugo, M.; Delaunay, K.; Lebon, C.; Naud, M.C.; Radet, L.; Zennaro, L.; Picard, E.; Daruich, A.; Beltrand, J.; Kermorvant-Duchemin, E.; et al. Long-Term Oral Treatment with Non-Hypoglycemic Dose of Glibenclamide Reduces Diabetic Retinopathy Damage in the Goto-KakizakiRat Model. Pharmaceutics 2021, 13, 1095. [Google Scholar] [CrossRef]
- Rojo Arias, J.E.; Englmaier, V.E.; Jászai, J. VEGF-Trap Modulates Retinal Inflammation in the Murine Oxygen-Induced Retinopathy (OIR) Model. Biomedicines 2022, 10, 201. [Google Scholar] [CrossRef] [PubMed]
- Delioglu, E.N.E.; Ugurlu, N.; Erdal, E.; Malekghasemi, S.; Cagil, N. Evaluation of sphingolipid metabolism on diabetic retinopathy. Indian J. Ophthalmol. 2021, 69, 3376–3380. [Google Scholar] [CrossRef] [PubMed]
- Sun, Y.; Kong, L.; Zhang, A.H.; Han, Y.; Sun, H.; Yan, G.L.; Wang, X.J. A Hypothesis From Metabolomics Analysis of Diabetic Retinopathy: Arginine-Creatine Metabolic Pathway May Be a New Treatment Strategy for Diabetic Retinopathy. Front. Endocrinol. 2022, 13, 858012. [Google Scholar]
References | Subjects | Techniques | Statistical Methods | Differential Metabolites |
---|---|---|---|---|
Li X (2011) [45] | NPDR (n = 39) PDR (n = 25) DM (n = 25) Control (n = 30) | GC-TOFMS | PLS-DA | Pyruvic acids, L-aspartic acid, β-hydroxybutyric acid, methymaleic acid, citric acid, glucose, stearic acid, transoleic acid, linoleic acid, and arachidonic acid |
Xia JF (2011) [46] | DR (n = 38) DM (n = 37) Control (n = 41) | HPLC–UV/MS/MS | ROC | Cytosine, cytidine, uridine, thymine, thymidin, and 2′-deoxyuridine |
Peng LY (2018) [47] | NPDR (n = 28) Control (n = 22) | LC-MS | OPLS-DA | Prostaglandin 2a |
Rhee (2018) [48] | NPDR (n = 72) PDR (n = 52) Control (n = 59) | GC-TOF-MS, UPLC-Q-TOF-MS | OPLS-DA | Asparagine, aspartic acid, glutamine, glutamic acid, 1,5-anhydroglucitol, fructose, and myo-inositol |
Sumarriva (2019) [49] | NPDR (n = 49) PDR (n = 34) Control (n = 90) | LC-MS/MS | PLS-DA | Arginine, citrulline, glutamic c-semialdehyde, acylcarnitine, and dehydroxycarnitine |
Zhu XR (2019) [50] | PDR (n = 21) NDR (n = 21) | LC-MS | ROC | Fumaric acid, uridine, acetic acid, and cytidine |
Sun Y (2021) [51] | DR (n = 42) Control (n = 32) | UHPLC-QE MS | OPLS-DA | Pseudouridine, N-acetyltryptophan, glutamate, leucylleucine, and HbA1c |
Ding C (2022) [52] | PDR (n = 27) NPDR (n = 18) Control (n = 21) | UPLC-MS | OPLS-DA | Proline, threonine, glutamine, aspartate, glutamate, and tryptophan |
Peters (2022) [53] | DM (n = 159) NPDR (n = 92) DR (n = 64) | LC-MS/MS | Wilcoxon Rank Sum test | Arginine, citrulline, asymmetric dimethylarginine, ornithine, proline, and argininosuccinic acid |
Wang HY (2022) [54] | PDR (n = 88) Control (n = 51) | UPLC-MS/MS | OPLS-DA | Phenylacetyl glutamine, pantothenate, CoA, tyrosine, and phenylalanine |
Wang ZY (2022) [55] | NPDR (n = 28) PDR (n = 28) DM (n = 27) Control (n = 27) | UHPLC-MS/MS | OPLS-DA | L-Citrulline, indoleacetic acid, 1-methylhistidine, phosphatidylcholines, hexanoylcarnitine, chenodeoxycholic acid, and eicosapentaenoic acid |
References | Subjects | Techniques | Statistical Methods | Differential Metabolites |
---|---|---|---|---|
Munipally (2011) [56] | NPDR (n = 22) PDR (n = 24) Control (n = 35) | HPLC | t-test | kynurenine, kynurenic acid, and 3-hydroxykynurenine |
Curovic (2020) [57] | Mild PDR (n = 90) Moderate PDR (n = 186) PDR (n = 121) PDR with fibrosis (n = 107) Control (n = 141) | GC-TOFMS | Cox models | 2,4-dihydroxybutyric acid, 3,4-dihydroxybutyric acid, ribonic acid, and ribitol |
Xuan QH (2020) [58] | NDR (n = 111) NPDR (n = 99) MMPDR (n = 90) SNPDR (n = 85) PDR (n = 76) | GC-MS, LC-MS | PLS-DA | 12-hydroxyeicosatetraenoic acid and 2-piperidone |
Yun JH (2020) [59] | NDR (n = 143) NPDR (n = 123) PDR (n = 51) | LC-MS/MS | Stats | Total dimethylamine, tryptophan, kynurenine, carnitines, several amino acids, and phosphatidylcholines |
Quek (2021) [60] | Moderate/above DR (n = 328) VTDR (n = 217) Control (n = 2211) | NMR | ROC | Tyrosine, 3-hydroxybutate, sphingomyelins, and creatinine |
Zuo JJ (2021) [61] | DM (n = 46) DR (n = 46) | UPLC-ESI-MS/MS | OPLS-DA | Linoleic acid, nicotinuric acid, ornithine, and phenylacetylglutamine |
Guo CG (2022) [62] | NPDR (n = 60) PDR (n = 9) | UPLC-MS/MS | PLS-DA | 12-/15-HETE, PUFAs, thiamine triphosphate, L-cysteine, and glutamate |
Li JS (2022) [63] | NDR (n = 112) DR (n = 83) Control (n = 755) | UPLC-ESI-MS/MS | ROC | Thiamine triphosphate and 2-pyrrolidone |
Wang ZY (2022) [64] | NPDR (n = 15) PDR (n = 15) DM (n = 15) Control (n = 15) | UHPLC-MS/MS | PLS-DA | Aspartate, glutamine, N-acetyl-L-glutamate,N-acetyl-L-aspartate, pantothenate, dihomo-gamma-linolenate, docosahexaenoic acid, and icosapentaenoic acid |
Yang J (2022) [65] | DR + DN (n = 20) Control (n = 20) | UPLC-MS/MS | OPLS-DA, PLS-DA | 1-methylhistidine, coagulation factor, and fifibrinogen |
Shen YH (2023) [66] | NPDR (n = 105) PDR (n = 62) | LC-MS | ROC, PLS-DA | Methionine and taurine |
References | Subjects | Techniques | Statistical Methods | Differential Metabolites |
---|---|---|---|---|
Barba (2010) [44] | PDR (n = 22) Controls (n = 22) | 1H-NMR | PLS-DA | Lactate, acetate, galactitol, ascorbic acid, and ribose phosphate |
Nathan R (2018) [70] | DR (n = 8) RD (n = 17) Controls (n = 9) | UHPLC-MS | PLS-DA, ROC | Xanthine, proline, citrulline, and long-chain acylcarnitines |
Wang HY (2020) [71] | PDR (n = 28) MH (n = 22) | GC-TOFMS | OPLS-DA, ROC | Pyruvic acid, uric acid, ornithine, l-lysine, l-leucine, pyroglutamic acid, l-alanine, l-threonine, hydroxylamine, l-valine, l-alloisoleucine, l-phenylalanine, creatinine, myoinositol, and l-glutamine |
Tomita (2021) [72] | PDR (n = 35) Control (n = 19) | UHPLC-MS/MS | t test | Pyruvate, lactate, proline, glycine, citrulline, ornithine, allantoin, creatine, dimethylglycine, N-acetylserine, succinate, and α-ketoglutarate |
Wang HY (2022) [54] | PDR (n = 51) Control (n = 23) | UPLC-MS/MS | OPLS-DA | Phenylacetyl glutamine, pantothenate, CoA, tyrosine, and phenylalanine |
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He, S.; Sun, L.; Chen, J.; Ouyang, Y. Recent Advances and Perspectives in Relation to the Metabolomics-Based Study of Diabetic Retinopathy. Metabolites 2023, 13, 1007. https://doi.org/10.3390/metabo13091007
He S, Sun L, Chen J, Ouyang Y. Recent Advances and Perspectives in Relation to the Metabolomics-Based Study of Diabetic Retinopathy. Metabolites. 2023; 13(9):1007. https://doi.org/10.3390/metabo13091007
Chicago/Turabian StyleHe, Shuling, Lvyun Sun, Jiali Chen, and Yang Ouyang. 2023. "Recent Advances and Perspectives in Relation to the Metabolomics-Based Study of Diabetic Retinopathy" Metabolites 13, no. 9: 1007. https://doi.org/10.3390/metabo13091007
APA StyleHe, S., Sun, L., Chen, J., & Ouyang, Y. (2023). Recent Advances and Perspectives in Relation to the Metabolomics-Based Study of Diabetic Retinopathy. Metabolites, 13(9), 1007. https://doi.org/10.3390/metabo13091007