The Influence of rs1859168 Polymorphism on Serum Expression of HOTTIP and Its Target miR-615-3p in Egyptian Patients with Breast Cancer
Abstract
:1. Introduction
2. Materials and Methods
2.1. Subjects
2.2. Blood Sample Processing
2.3. Total RNA Extraction and Reverse Transcription
2.4. HOTTIP and miR-615-3p Detection by RT-qPCR
2.5. DNA Extraction and Genotyping
2.6. Statistical Analysis
3. Results
3.1. Demographic, Clinical, and Pathological Features of the Participants
3.2. Frequency Distribution of the Alleles and Genotypes of rs1859168 in Patients with BC, FA, and Healthy Subjects
3.3. HOTTIP and miR-615-3p Expression Levels in the Serum of Patients with BC, FA, and Healthy Controls
3.4. The Influence of rs1859168 on the Serum Levels of HOTTIP and miR-615-3p in Patients with BC and FA
3.5. Associations between the rs1859168 Genotypes, Alleles, Laboratory Data, and Clinical and Pathological Features of Patients with BC
3.6. HOTTIP and miR-615-3p Expression Levels in Relation to the Pathological Features and Clinical Parameters in Patients with BC
3.7. Correlation between the Serum HOTTIP and miR-615-3p Levels in Patients with BC
3.8. Evaluation of Serum HOTTIP and miR-615-3p as Diagnostic Biomarkers of BC
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Variables | BC (n = 151) | FA (n = 139) | Control (n = 143) | p-Value (BC vs. control) | p-Value (BC vs. FA) | p-Value (FA vs. control) | |
---|---|---|---|---|---|---|---|
Age (years) | Mean ± SD | 54.91 ± 6.43 | 51.08 ± 9.73 | 49.89 ± 10.37 | 0.09 | 0.341 | 0.178 |
Family history | Yes (BC) n (%) | 94 (62.25) | 2 (1.44) | 1 (0.70) | <0.001 * | <0.001 * | 0.19 |
Yes (FA) n (%) | 15 (9.93) | 11 (7.91) | 2 (1.40) | 0.06 | 0.09 | 0.15 | |
No n (%) | 42 (27.81) | 126 (90.65) | 140 (97.90) | <0.001 * | 0.01 * | 0.182 | |
History of Hypertension | Yes n (%) | 25 (16.56) | 10 (7.19) | 8 (5.59) | 0.54 | 0.243 | 0.821 |
No n (%) | 126 (83.44) | 129 (92.81) | 135 (94.41) | 0.214 | 0.343 | 0.88 | |
History of DM | Yes n (%) | 29 (19.21) | 22 (15.83) | 15 (10.49) | 0.17 | 0.69 | 0.54 |
No n (%) | 122 (80.79) | 117 (84.17) | 128 (89.51) | 0.39 | 0.67 | 0.24 | |
Menstrual history | Premenopausal (regular) | 24 (15.89) | 51 (36.69) | 55 (38.46) | 0.09 | 0.08 | 0.401 |
Premenopausal (irregular) | 26 (17.22) | 41 (29.50) | 53 (37.06) | 0.19 | 0.06 | 0.108 | |
Postmenopausal | 101 (66.89) | 47 (33.81) | 35 (24.48) | 0.06 | 0.09 | 0.28 | |
Hormonal Contraceptive | Yes n (%) | 103 (68.21) | 89 (64.03) | 67 (46.85) | 0.13 | 0.53 | 0.18 |
No n (%) | 48 (31.79) | 50 (35.97) | 76 (53.15) | 0.49 | 0.56 | 0.27 | |
Type of tumor n (%) | Invasive Duct ii | 117 (77.48) | |||||
Invasive Duct iii | 28 (18.55) | ||||||
Invasive Lobular Carcinoma | 6 (3.97) | ||||||
T Classification n (%) | T2 | 89 (58.94) | |||||
T3 | 62 (41.06) | ||||||
N Classification n (%) | N1 | 22 (14.57) | |||||
N2 | 88 (58.28) | ||||||
N3 | 41 (27.15) | ||||||
M Classification n (%) | Zero | 151 (100) | |||||
TNM staging n (%) | II | 21 (13.91) | |||||
III | 130 (86.09) | ||||||
ER/PR n (%) | Positive | 35 (23.18) | |||||
Negative | 116 (67.82) | ||||||
Tumor Size n (%) | <5 cm | 79 (52.31) | |||||
>5 cm | 72 (47.69) |
rs1859168 (A/C) | Control (143) | FA (139) | BC (151) | ||||
---|---|---|---|---|---|---|---|
n (%) | n (%) | OR (95% CI)/p-Value (FA vs. Control) | n (%) | OR (95% CI)/p-Value (BC vs. Control) | OR (95% CI)/p-Value (BC vs. FA) | ||
Genotype | AA | 49 (34.26) | 11 (7.91) | 1 | 5 (3.31) | 1 | 1 |
AC | 63 (44.06) | 113 (81.30) | 1.552 (0.129–2.17)/0.08 | 42 (27.82) | 8.534 (2.478–17.392)/<0.001 * | 4.25 (1.56–10.096)/<0.001 * | |
CC | 31 (21.68) | 15 (10.79) | 2.851 (0.954–5.02)/0.023 * | 104 (68.87) | 1.983 (0.987–4.572)/0.013 * | 6.015 (2.557–7.916)/<0.001 * | |
Dominant Model | AA | 49 (34.26) | 11 (7.91) | 1 | 5 (3.31) | 1 | 1 |
AC + CC | 94 (65.74) | 128 (92.09) | 1.223 (0.889–2.08)/0.09 | 146 (96.69) | 5.271 (1.223–13.130)/<0.001 * | 1.033 (0.795–1.883)/0.208 | |
Recessive Model | CC | 31 (21.68) | 15 (10.79) | 0.98 (0.241–2.422)/0.791 | 104 (68.87) | 7.588 (5.33–14.478)/<0.001 * | 3.251 (1.072–8.364)/<0.001 * |
AC + AA | 112 (78.32) | 124 (89.21) | 1 | 47 (31.13) | 1 | 1 | |
Allele | A | 161 (56.29) | 135 (48.56) | 1 | 47 (15.65) | 1 | 1 |
C | 125 (43.71) | 143 (51.44) | 1.097 (0.015–1.731)/0.196 | 255 (84.35) | 9.52 (4.823–19.408)/<0.001 * | 5.83 (3.16–9.912)/<0.001 * |
Parameters | CC | AC + AA | OR (95% CI), p-Value | C | A | OR (95% CI), p-Value |
---|---|---|---|---|---|---|
n (%) | n (%) | n (%) | n (%) | |||
Age | ||||||
<35 | 48 (46.15) | 25 (53.19) | 1 | 98 (32.45) | 27 (8.94) | 1 |
≥35 | 56 (53.85) | 22 (46.81) | 0.522 (0.254–1.954), 0.301 | 157 (50.99) | 20 (6.62) | 0.339 (0.187–1.09), 0.661 |
Family history | ||||||
No | 29 (27.88) | 27 (57.45) | 1 | 188 (62.25) | 22 (7.28) | 1 |
Yes | 75 (72.12) | 20 (42.55) | 3.307 (1.982–6.148), 0.02 * | 67 (22.20) | 25 (8.27) | 2.359 (1.152–3.558), 0.04 * |
History of HTN | ||||||
No | 89 (85.85) | 37 (78.72) | 1 | 137 (45.36) | 19 (6.29) | 1 |
Yes | 15 (14.15) | 10 (27.28) | 0.528 (0.175–0.899) 0.537 | 118 (39.07) | 28 (9.28) | 0.562 (0.357–1.076), 0.09 |
History of DM | ||||||
No | 87 (83.65) | 39 (82.98) | 1 | 146 (48.35) | 30 (9.93) | 1 |
Yes | 17 (16.35) | 8 (17.12) | 0.492 (0.119–0.741) 0.357 | 109 (36.09) | 17 (5.63) | 0.341 (0.048–0.834) 0.62 |
Menstrual history | ||||||
Pre. (regular) | 10 (9.62) | 14 (29.79) | 1 | 31 (10.26) | 14 (4.63) | 1 |
Pre. (irregular) | 15 (14.42) | 11 (23.41) | 0.293 (0.108–0.458) 0.803 | 42 (13.91) | 8 (2.65) | 0.338 (0.147–0.695) 0.233 |
Postmenopausal | 79 (75.96) | 22 (46.80) | 1.52 (0.684–3.01) 0.05 * | 182 (60.27) | 25 (8.28) | 0.553 (0.277–0.830) 0.426 |
Contraception | ||||||
No | 35 (33.65) | 13 (27.66) | 1 | 98 (32.45) | 15 (4.97) | 1 |
Yes | 69 (66.34) | 34 (82.34) | 0.553 (0.179–0.893) 0.558 | 157 (51.99) | 32 (10.59) | 0.835 (0.312–1.078) 0.391 |
Type Of Tumor | ||||||
Invasive Duct II | 79 (75.96) | 38 (80.85) | 1 | 205 (67.88) | 30 (9.94) | 1 |
Invasive Duct III | 20 (19.23) | 8 (17.02) | 0.298 (0.113–0.449) 0.469 | 43 (14.24) | 12 (3.97) | 0.229 (0.173–0.501) 0.372 |
Invasive Lobular II | 5 (4.81) | 1 (2.13) | 0.187 (0.097–0.384) 0.834 | 7 (2.32) | 5 (1.65) | 0.308 (0.119–0.486) 0.421 |
T classification | ||||||
T2 | 59 (56.73) | 30 (63.83) | 1 | 118 (39.07) | 21 (6.96) | 1 |
T3 | 45 (43.27) | 17 (36.17) | 1.334 (0.886–3.442) 0.05 * | 137 (45.36) | 26 (8.61) | 2.462 (1.95–6.087) 0.007 * |
N classification | ||||||
N1 | 11 (10.57) | 11 (23.40) | 1 | 28 (9.27) | 15 (4.97) | 1 |
N2 | 54 (51.93) | 34 (72.35) | 0.852 (0.259–1.097) 0.09 | 123 (40.73) | 20 (6.62) | 2.335 (1.85–5.553) 0.008 * |
N3 | 39 (37.50) | 2 (4.25) | 0.519 (0.456–0.82) 0.13 | 104 (34.44) | 12 (3.97) | 1.86 (0.943–3.421) 0.05 * |
TNM staging | ||||||
II | (87.69) | 13 (27.65) | 1 | 23 (7.61) | 32 (10.60) | 1 |
III | 96 (92.31) | 34 (72.35) | 2.36 (1.941–4.58) | 232 (76.82) | 15 (4.97) | 2.087 (1.246–6.02) 0.01 * |
ER/PR | ||||||
Positive | 25 (24.04) | 10 (21.28) | 1 | 77 (25.50) | 15 (4.97) | 1 |
Negative | 79 (75.96) | 37 (78.72) | 0.899 (0.379–1.09) 0.175 | 178 (58.94) | 32 (10.59) | 1.258 (0.689–3.08) 0.03 * |
Tumor Size | ||||||
<5 cm | 47 (45.19) | 32 (68.08) | 1 | 89 (29.47) | 19 (6.29) | 1 |
>5 cm | 57 (54.81) | 15 (31.92) | 0.233 (0.183–0.506) 0.277 | 166 (54.97) | 28 (9.27) | 0.324 (0.177–0.526) 0.23 |
Parameters | HOTTIP Median (IQR) | miR-615- 3p Median (IQR) | p-Value | |
---|---|---|---|---|
Age | <35 | 3.7 (0.81–8.02) | 0.35 (0.02–2.00) | 0.04 *,a, 0.003 *,b |
≥35 | 4.02 (0.73–10.1) | 0.05 (0.004–1.18) | ||
Family history | Yes | 6.08 (1.02–10.2) | 0.14 (0.004–1.76) | <0.001 *,a, 0.02 *,b |
No | 2.01 (0.14–3.57) | 0.52 (0.01–2.00) | ||
History ofHypertension | Yes | 3.1 (0.81–10.05) | 0.20 (0.004–0.92) | 0.194 a, 0.533 b |
No | 4.04(0.07–8.05) | 0.27 (0.05–2.00) | ||
History of DM | Yes | 3.87 (0.75–8.15) | 1.89 (0.01–0.88) | 0.567 a, 0.287 b |
No | 3.8 (0.16–10.20) | 0.25 (0.004–2.00) | ||
Menstrual history | Premenopausal (regular) | 2.9 (0.09–6.04) | 0.27 (0.004–1.92) | 0.338 a, 0.09 b |
Premenopausal (irregular) | 2.5 (0.185–8.45) | 0.19 (0.03–2.00) | ||
Postmenopausal | 3.08 (0.09–10.06) | 0.24 (0.07–1.81) | ||
Hormonal Contraceptive | Yes | 3.1 (0.28–6304) | 0.21 (0.004–0.179) | 0.433 a, 0.294 b |
No | 2.9 (0.98–10.2) | 0.18 (0.001–2.00) | ||
type of tumor | invasive duct ii | 3.01 (0.65–7.05) | 0.18 (0.004–1.89) | 0.663 a, 0.138 b |
invasive duct iii | 2.09 (0.93–9.05) | 0.20 (0.009–1.92) | ||
invasive lobular ii | 2.87 (0.73–10.02) | 0.25 (0.01–2.00) | ||
T classification | T2 | 3.5 (0.99–8.55) | 0.19 (0.009–1.89) | 0.731 a, 0.197 b |
T3 | 2.9 (0.08–10.01) | 0.22 (0.004–2.00) | ||
N classification | N1 | 3.09 (0.82–6.72) | 0.18 (0.01–1.89) | 0.208 a, 0.342 b |
N2 | 3.01 (0.19–10.05) | 0.24 (0.004–1.92) | ||
N3 | 2.89 (0.97–7.85) | 0.22 (0.09–2.00) | ||
TNM staging | II | 3.5 (0.07–10.05) | 0.25 (0.01–1.76) | 0.70 a, 0.05 *,b |
III | 3.05 (0.99–8.55) | 0.18 (0.004–2.00) | ||
ER/PR | Positive | 4.04 (0.09–10.2) | 0.18 (0.004–1.53) | 0.02 *,a, 0.03 *,b |
Negative | 1.98 (0.93–6.08) | 0.29 (0.09–2.00) | ||
Tumor Size | <5 cm | 2.75 (0.9–8.55) | 0.19 (0.004–189) | 0.297 a, 0.439 b |
>5 cm | 3.90 (1.2–10.2) | 0.21 (0.009–2.00) |
Variable | AUC (95% CI) | p-Value | Sensitivity | Specificity | Total Accuracy |
---|---|---|---|---|---|
HOTTIP (BC vs. FA) | 0.613 (0.545–0.680) | 0.001 * | 91.2% | 87.95% | 89.57 |
miR-615-3p (BC vs. FA) | 0.816 (0.763–0.869) | <0.001 * | 89.8% | 98.5% | 94.15 |
HOTTIP (BC vs. control + FA) | 0.615 (0.540–0.689) | <0.001 * | 94.5% | 89.5% | 90.00 |
miR-615-3p (BC vs. control + FA) | 0.841 (0.793–0.888) | <0.001 * | 90.4% | 95.6% | 93 |
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Abdelaleem, O.O.; Shaker, O.G.; AbdelHafez, M.N.; Abdelghaffar, N.K.; Eid, H.M.; Zaidan, M.; Khalefa, A.A.; Ahmed, N.A.; Hemeda, N.F.; Zaki, O.M.; et al. The Influence of rs1859168 Polymorphism on Serum Expression of HOTTIP and Its Target miR-615-3p in Egyptian Patients with Breast Cancer. Biomolecules 2021, 11, 733. https://doi.org/10.3390/biom11050733
Abdelaleem OO, Shaker OG, AbdelHafez MN, Abdelghaffar NK, Eid HM, Zaidan M, Khalefa AA, Ahmed NA, Hemeda NF, Zaki OM, et al. The Influence of rs1859168 Polymorphism on Serum Expression of HOTTIP and Its Target miR-615-3p in Egyptian Patients with Breast Cancer. Biomolecules. 2021; 11(5):733. https://doi.org/10.3390/biom11050733
Chicago/Turabian StyleAbdelaleem, Omayma O., Olfat G. Shaker, Marwa N. AbdelHafez, Noha K. Abdelghaffar, Hanaa M. Eid, Mohamed Zaidan, Abeer A. Khalefa, Naglaa A. Ahmed, Nada F. Hemeda, Othman M. Zaki, and et al. 2021. "The Influence of rs1859168 Polymorphism on Serum Expression of HOTTIP and Its Target miR-615-3p in Egyptian Patients with Breast Cancer" Biomolecules 11, no. 5: 733. https://doi.org/10.3390/biom11050733
APA StyleAbdelaleem, O. O., Shaker, O. G., AbdelHafez, M. N., Abdelghaffar, N. K., Eid, H. M., Zaidan, M., Khalefa, A. A., Ahmed, N. A., Hemeda, N. F., Zaki, O. M., Awaji, A. A. A., & Mohammed, S. R. (2021). The Influence of rs1859168 Polymorphism on Serum Expression of HOTTIP and Its Target miR-615-3p in Egyptian Patients with Breast Cancer. Biomolecules, 11(5), 733. https://doi.org/10.3390/biom11050733