Genetic Diversity of Genes Controlling Unilateral Incompatibility in Japanese Cultivars of Chinese Cabbage
Abstract
:1. Introduction
2. Results
2.1. Cultivars of Chinese Cabbage Produced by Japanese Seed Companies
2.2. Stigma-Side UI Phenotype Determined by Pollination Test
2.3. The SUI1 Allele and Its Distribution
2.4. The PUI1 Allele and Its Distribution
2.5. Genetic Segregation Analysis of the Dominant Negative Effect of SUI1-10
3. Discussion
4. Materials and Methods
4.1. Plant Material
4.2. Test Pollination
4.3. Cloning, Sequencing, and Genotyping of SUI1and PUI1 Alleles
4.4. Phylogenetic Analysis
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Bateman, A.J. Self-incompatibility systems in angiosperms. III. Cruciferae. Heredity 1955, 9, 53–68. [Google Scholar] [CrossRef] [Green Version]
- Suzuki, G.; Kai, N.; Hirose, T.; Fukui, K.; Nishio, T.; Takayama, S.; Isogai, A.; Watanabe, M.; Hinata, K. Genomic organization of the S locus: Identification and characterization of genes in SLG/SRK region of S9 haplotype of Brassica campestris (syn. rapa). Genetics 1999, 153, 391–400. [Google Scholar] [CrossRef] [PubMed]
- Takasaki, T.; Hatakeyama, K.; Suzuki, G.; Watanabe, M.; Isogai, A.; Hinata, K. The S receptor kinase determines self-incompatibility in Brassica stigma. Nature 2000, 403, 913–916. [Google Scholar] [CrossRef] [PubMed]
- Schopfer, C.R.; Nasrallah, M.E.; Nasrallah, J.B. The male determinant of self-incompatibility in Brassica. Science 1999, 286, 1697–1700. [Google Scholar] [CrossRef]
- Takayama, S.; Shiba, H.; Iwano, M.; Shimosato, H.; Che, F.-S.; Kai, N.; Watanabe, M.; Suzuki, G.; Hinata, K.; Isogai, A. The pollen determinant of self-incompatibility in Brassica campestris. Proc. Natl. Acad. Sci. USA 2000, 97, 1920–1925. [Google Scholar] [CrossRef] [Green Version]
- Takayama, S.; Shimosato, H.; Shiba, H.; Funato, M.; Che, F.-S.; Watanabe, M.; Iwano, M.; Isogai, A. Direct ligand-receptor complex interaction controls Brassica self-incompatibility. Nature 2001, 413, 534–538. [Google Scholar] [CrossRef]
- Nou, I.S.; Watanabe, M.; Isogai, A.; Shiozawa, H.; Suzuki, A.; Hinata, K. Variation of S-alleles and S-glycoproteins in a naturalized population of self-incompatible Brassica campestris L. Jpn. J. Genet. 1991, 66, 227–239. [Google Scholar] [CrossRef] [Green Version]
- Nou, I.S.; Watanabe, M.; Isuzugawa, K.; Isogai, A.; Hinata, K. Isolation of S-alleles from a wild population of Brassica campestris L. at Balcesme, Turkey and their characterization by S-glycoproteins. Sex. Plant Reprod. 1993, 6, 71–78. [Google Scholar] [CrossRef]
- Nou, I.S.; Watanabe, M.; Isogai, A.; Hinata, K. Comparison of S-alleles and S-glycoproteins between two wild populations of Brassica campestris in Turkey and Japan. Sex. Plant Reprod. 1993, 6, 79–86. [Google Scholar] [CrossRef]
- Hatakeyama, K.; Watanabe, M.; Takasaki, T.; Ojima, K.; Hinata, K. Dominance relationships between S-alleles in self-incompatible Brassica campestris L. Heredity 1998, 80, 241–247. [Google Scholar] [CrossRef]
- Takada, Y.; Nakanowatari, T.; Sato, J.; Hatakeyama, K.; Kakizaki, T.; Ito, A.; Suzuki, G.; Shiba, H.; Takayama, S.; Isogai, A.; et al. Genetic analysis of novel intra-species unilateral incompatibility in Brassica rapa (syn. campestris) L. Sex. Plant Reprod. 2005, 17, 211–217. [Google Scholar] [CrossRef]
- Takada, Y.; Murase, K.; Shimosato-Asano, H.; Sato, T.; Nakanishi, H.; Suwabe, K.; Shimizu, K.K.; Lim, Y.P.; Takayama, S.; Suzuki, G.; et al. Duplicated pollen-pistil recognition loci control intraspecific unilateral incompatibility in Brassica rapa. Nat. Plants 2017, 3, 17096. [Google Scholar] [CrossRef]
- Lewis, D.; Crowe, L.K. Unilateral incompatibility in flowering plants. Heredity 1958, 12, 233–256. [Google Scholar] [CrossRef] [Green Version]
- Hiscock, S.J.; Dickinson, H.G. Unilateral incompatibility within the Brassicaceae: Further evidence for the involvement of the self-incompatibility (S)-locus. Theor. Appl. Genet. 1993, 86, 744–753. [Google Scholar] [CrossRef]
- Murase, K.; Shiba, H.; Iwano, M.; Che, F.S.; Watanabe, M.; Isogai, A.; Takayama, S. A membrane-anchored protein kinase involved in Brassica self-incompatibility signaling. Science 2004, 303, 1516–1519. [Google Scholar] [CrossRef]
- Takada, Y.; Sato, T.; Suzuki, G.; Shiba, H.; Takayama, S.; Watanabe, M. Involvement of MLPK pathway in intraspecies unilateral incompatibility regulated by a single locus with stigma and pollen factors. G3 Genes Genomes Genet. 2013, 3, 719–726. [Google Scholar] [CrossRef] [Green Version]
- Shimosato, H.; Yokota, N.; Shiba, H.; Iwano, M.; Entani, T.; Che, F.S.; Watanabe, M.; Isogai, A.; Takayama, S. Characterization of the SP11/SCR high-affinity binding site involved in self/nonself recognition in Brassica self-incompatibility. Plant Cell 2007, 19, 107–117. [Google Scholar] [CrossRef] [Green Version]
- Naithani, S.; Chookajorn, T.; Ripoll, D.R.; Nasrallah, J.B. Structural modules for receptor dimerization in the S-locus receptor kinase extracellular domain. Proc. Natl. Acad. Sci. USA 2007, 104, 12211–12216. [Google Scholar] [CrossRef] [Green Version]
- Yamamoto, M.; Tantikanjana, T.; Nishio, T.; Nasrallah, M.E.; Nasrallah, J.B. Site-specific N-glycosylation of the S-locus receptor kinase and its role in the self-incompatibility response of the Brassicaceae. Plant Cell 2014, 26, 4749–4762. [Google Scholar] [CrossRef] [Green Version]
- Ma, R.; Han, Z.; Hu, Z.; Lin, G.; Gong, X.; Zhang, H.; Nasrallah, J.B.; Chai, J. Structural basis for specific self-incompatibility response in Brassica. Cell Res. 2016, 26, 1320–1329. [Google Scholar] [CrossRef] [Green Version]
- Murase, K.; Moriwaki, Y.; Mori, T.; Liu, X.; Masaka, C.; Takada, Y.; Maesaki, R.; Mishima, M.; Fujii, S.; Hirano, Y.; et al. Mechanism of self/nonself-discrimination in Brassica self-incompatibility. Nat. Commun. 2020, 11, 4916. [Google Scholar] [CrossRef]
- Fujii, S.; Takayama, S. Multilayered dominance hierarchy in plant self-incompatibility. Plant Reprod. 2018, 31, 15–19. [Google Scholar] [CrossRef]
- Hatakeyama, K.; Takasaki, T.; Suzuki, G.; Nishio, T.; Watanabe, M.; Isogai, A.; Hinata, K. The S receptor kinase gene determines dominance relationships in stigma expression of self-incompatibility in Brassica. Plant J. 2001, 26, 69–76. [Google Scholar] [CrossRef] [Green Version]
- Shiba, H.; Iwano, M.; Entani, T.; Ishimoto, K.; Shimosato, H.; Che, F.S.; Satta, Y.; Ito, A.; Takada, Y.; Watanabe, M.; et al. The dominance of alleles controlling self-incompatibility in Brassica pollen is regulated at the RNA level. Plant Cell 2002, 14, 491–504. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Tarutani, Y.; Shiba, H.; Iwano, M.; Kakizaki, T.; Suzuki, G.; Watanabe, M.; Isogai, A.; Takayama, S. Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility. Nature 2010, 466, 983–986. [Google Scholar] [CrossRef]
- Yasuda, S.; Wada, Y.; Kakizaki, T.; Tarutani, Y.; Miura-Uno, E.; Murase, K.; Fujii, S.; Hioki, T.; Shimoda, T.; Takada, Y.; et al. A complex dominance hierarchy is controlled by polymorphism of small RNAs and their targets. Nat. Plants 2016, 3, 16206. [Google Scholar] [CrossRef] [PubMed]
- Shpak, E.D.; Lakeman, M.B.; Torii, K.U. Dominant-negative receptor uncovers redundancy in the Arabidopsis ERECTA leucine-rich repeat receptor-like kinase signaling pathway that regulates organ shape. Plant Cell 2003, 15, 1095–1110. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Diévart, A.; Dalal, M.; Tax, F.E.; Lacey, A.D.; Huttly, A.; Li, J.; Clark, S.E. CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ development. Plant Cell 2003, 15, 1198–1211. [Google Scholar] [CrossRef] [Green Version]
- Wang, X.; Li, X.; Meisenhelder, J.; Hunter, T.; Yoshida, S.; Asami, T.; Chory, J. Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. Dev. Cell 2005, 8, 855–865. [Google Scholar] [CrossRef] [Green Version]
- Zhang, L.; Cai, X.; Wu, J.; Liu, M.; Grob, S.; Cheng, F.; Liang, J.; Cai, C.; Liu, Z.; Liu, B.; et al. Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies. Hortic. Res. 2018, 5, 50. [Google Scholar] [CrossRef] [Green Version]
- Belser, C.; Istace, B.; Denis, E.; Dubarry, M.; Baurens, F.C.; Falentin, C.; Genete, M.; Berrabah, W.; Chèvre, A.M.; Deloume, R.; et al. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Nat. Plants 2018, 4, 879–887. [Google Scholar] [CrossRef]
- Kho, Y.O.; Bear, J. Observing pollen tubes by means of fluorescence. Euphytica 1968, 17, 298–302. [Google Scholar] [CrossRef]
- Murray, M.G.; Thompson, W.F. Rapid isolation of high molecular weight plant DNA. Nucl. Acids Res. 1980, 8, 4321–4325. [Google Scholar] [CrossRef] [Green Version]
- Dereeper, A.; Guignon, V.; Blanc, G.; Audic, S.; Buffet, S.; Chevenet, F.; Dufayard, J.F.; Guindon, S.; Lefort, V.; Lescot, M.; et al. Phylogeny.fr: Robust phylogenetic analysis for the non-specialist. Nucl. Acids Res. 2008, 36, W465–W469. [Google Scholar] [CrossRef]
Sample Number | Seed Company | Cultivar | Stigma-Side UI Phenotype | Genotype | |
---|---|---|---|---|---|
SUI1 | PUI1 | ||||
#1 | Tokita Seed Co., Ltd. | Mainoumi | UI | SUI1-2/SUI1-11 | pui1-3/pui1-4/pui1-6 |
#2 | Takii & Co., Ltd. | Puchihiri | UI | SUI1-2 | pui1-3/pui1-4 |
#3 | Takii & Co., Ltd. | Kigokoro 75 | UI | SUI1-2 | pui1-3/pui1-4 |
#4 | Sakata Seed Corp. | Kimikomachi | UI | SUI1-2 | pui1-3/pui1-4 |
#5 | Takii & Co., Ltd. | Chihiri 70 | UC | sui1-t10 | pui1-3/pui1-4 |
#6 | Takii & Co., Ltd. | Banki | UI | SUI1-2 | nd |
#7 | Watanabe Seed Co., Ltd. | Matsushima shin2gou | UI | nd | pui1-3/pui1-4 |
#8 | Noguchi Seed Co. | Kashinhakusai | UI | SUI1-1 | pui1-3/pui1-4 |
#9 | Watanabe Seed Co., Ltd. | Menkoi | UI | SUI1-2/SUI1-11 | pui1-3/pui1-4/pui1-6 |
#10 | Ishii Seed Growers Co., Ltd. | Kinami 90 | UI | nd | nd |
#11 | Kaneko Seed Co., Ltd. | Kougetsu 77 | UI | SUI1-2 | pui1-3/pui1-4 |
#14 | Kaneko Seed Co., Ltd. | Eiki | UC | nd | pui1-3/pui1-4/pui1-6 |
#16 | Kaneko Seed Co., Ltd. | Moeki | UI | nd | pui1-3/pui1-4 |
#17 | Kaneko Seed Co., Ltd. | Kasumihakusai | UC | SUI1-2/SUI1-12 | pui1-3/pui1-4/pui1-6 |
#18 | Kaneko Seed Co., Ltd. | Shouki | UI | nd | pui1-3/pui1-4 |
#19 | Watanabe Seed Co., Ltd. | Strong CR | UI | SUI1-2 | pui1-3/pui1-4 |
#20 | Watanabe Seed Co., Ltd. | Aiki | UI | nd | pui1-3/pui1-4/pui1-6 |
#23 | Nozaki Saishujo Ltd. | Maiko | nd | nd | pui1-3/pui1-4 |
#24 | Nozaki Saishujo Ltd. | Chi China | UI | nd | nd |
#25 | Nozaki Saishujo Ltd. | Eisyun | nd | nd | pui1-3/pui1-4/pui1-6 |
#27 | Nozaki Saishujo Ltd. | Retasai | UI | nd | pui1-3/pui1-4/pui1-6 |
#33 | Marutane Seed Co., Ltd. | Chikara | UI | SUI1-2 | pui1-3/pui1-4 |
#35 | Yamato Noen Co., Ltd. | Kiyorokobi | UI | SUI1-2 | pui1-3/pui1-4 |
#41 | Watanabe Seed Co., Ltd. | Kiai 65 | UI | nd | pui1-3/pui1-4 |
#45 | Kaneko Seed Co., Ltd. | Gokui | UC | nd | pui1-3/pui1-4/pui1-6 |
#47 | Kaneko Seed Co., Ltd. | Taibyou nozomi 60 | UI | nd | pui1-3/pui1-4 |
#49 | Mikado Kyowa Seed Co., Ltd. | CR Ouken | UI | SUI1-2 | pui1-3/pui1-4 |
#50 | Mikado Kyowa Co., Ltd. | Hakuei hakusai | UC | SUI1-2/SUI1-10 | pui1-3/pui1-4 |
#51 | Mikado Kyowa Co., Ltd. | Senki | nd | nd | pui1-3/pui1-4/pui1-6 |
#53 | Sakata Seed Corp. | Saiki | nd | nd | pui1-3/pui1-4/pui1-6 |
#55 | Sakata Seed Corp. | Yumebuki | UI | nd | pui1-3/pui1-4/pui1-6 |
#57 | Takayama Seed Co., Ltd. | Gokigen | UI | nd | pui1-3/pui1-4 |
#58 | Ishii Seed Growers Co., Ltd. | CR Seiga 65 | UI | SUI1-2 | pui1-3/pui1-4 |
#62 | Takii & Co., Ltd. | Oushou | UI | nd | nd |
#63 | Takii & Co., Ltd. | Musou | UI | SUI1-2 | pui1-3/pui1-4 |
#64 | Takii & Co., Ltd. | Senshou | UI | nd | pui1-3/pui1-4 |
#65 | Takii & Co., Ltd. | Kinshou | UI | nd | pui1-3/pui1-4 |
#74 | Tohoku Seed Co., Ltd. | Daifuku | UI | SUI1-2 | pui1-3/pui1-4 |
#75 | Tohoku Seed Co., Ltd. | Daifuku75 | UI | nd | pui1-3/pui1-4 |
#77 | Tohoku Seed Co., Ltd. | Shinseiki | UI | nd | pui1-3/pui1-4 |
#80 | Nanto Seed Co., Ltd. | CR Kinshachi 75 | UI | SUI1-2 | pui1-3/pui1-4 |
#83 | Nanto Seed Co., Ltd. | Taibyou apolo 60 | UC | SUI1-2/SUI1-10 | pui1-3/pui1-4 |
#84 | Nippon Norin Seed Co. | Kikumusume 65 | UI | SUI1-2 | pui1-3/pui1-4 |
#85 | Nippon Norin Seed Co. | Kien75 | UI | nd | pui1-3/pui1-4 |
#88 | Nippon Norin Seed Co. | Super CR Shinrisou | UC | SUI1-2 | pui1-3/pui1-4 |
#91 | Takayama Seed Co., Ltd. | Kinkaku 65 | UI | nd | pui1-3/pui1-4/pui1-6 |
#96 | Tokita Seed Co., Ltd. | Haruhi | UI | nd | pui1-3/pui1-4/pui1-6 |
#97 | Nanto Seed Co., Ltd. | Taiki 60 | UI | nd | pui1-3/pui1-4 |
#101 | Musashino Seed Co., Ltd. | Nanzan | UI | nd | pui1-3/pui1-4/pui1-6 |
#102 | Watanabe Seed Co., Ltd. | Seitoku | nd | nd | pui1-3/pui1-4 |
#103 | Watanabe Seed Co., Ltd. | Shunjuu | UI | nd | pui1-3/pui1-4 |
#104 | Watanabe Seed Co., Ltd. | Kaname | UI | nd | pui1-3/pui1-4 |
Sample Number | Cultivar | n | PUI1 Genotype Detected | |
---|---|---|---|---|
pui1-3/pui1-4 | pui1-3/pui1-4/pui1-6 | |||
#45 | Gokui | 32 | 0 | 32 |
#88 | Super CR Shinrisou | 22 | 22 | -* |
#101 | Nanzan | 78 | 17 | 61 |
Population | SUI1 Genotype | n | Stigma-Side UI Phenotype | |
---|---|---|---|---|
UI | UC | |||
#83-S1 | SUI1-2/SUI1-2 | 3 | 3 | 0 |
SUI1-2/SUI1-10 | 5 | 0 | 5 | |
SUI1-10/SUI1-10 | 3 | 0 | 3 | |
#83-S2 | SUI1-2/SUI1-2 | 23 | 23 | 0 |
SUI1-2/SUI1-10 | 41 | 0 | 41 | |
SUI1-10/SUI1-10 | 16 | 0 | 16 |
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Takada, Y.; Mihara, A.; He, Y.; Xie, H.; Ozaki, Y.; Nishida, H.; Hong, S.; Lim, Y.-P.; Takayama, S.; Suzuki, G.; et al. Genetic Diversity of Genes Controlling Unilateral Incompatibility in Japanese Cultivars of Chinese Cabbage. Plants 2021, 10, 2467. https://doi.org/10.3390/plants10112467
Takada Y, Mihara A, He Y, Xie H, Ozaki Y, Nishida H, Hong S, Lim Y-P, Takayama S, Suzuki G, et al. Genetic Diversity of Genes Controlling Unilateral Incompatibility in Japanese Cultivars of Chinese Cabbage. Plants. 2021; 10(11):2467. https://doi.org/10.3390/plants10112467
Chicago/Turabian StyleTakada, Yoshinobu, Atsuki Mihara, Yuhui He, Haolin Xie, Yusuke Ozaki, Hikari Nishida, Seongmin Hong, Yong-Pyo Lim, Seiji Takayama, Go Suzuki, and et al. 2021. "Genetic Diversity of Genes Controlling Unilateral Incompatibility in Japanese Cultivars of Chinese Cabbage" Plants 10, no. 11: 2467. https://doi.org/10.3390/plants10112467
APA StyleTakada, Y., Mihara, A., He, Y., Xie, H., Ozaki, Y., Nishida, H., Hong, S., Lim, Y. -P., Takayama, S., Suzuki, G., & Watanabe, M. (2021). Genetic Diversity of Genes Controlling Unilateral Incompatibility in Japanese Cultivars of Chinese Cabbage. Plants, 10(11), 2467. https://doi.org/10.3390/plants10112467