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Article

Species Identification and Genetic Diversity Analysis of Medicinal Plants Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz.

by
Jing Sun
1,2,
Qing Sun
1,2,
Xin Li
1,2,
Wenjing Li
3,
Yi Li
1,
Yubi Zhou
1 and
Yanping Hu
1,*
1
Qinghai Provincial Key Laboratory of Qinghai–Tibet Plateau Biological Resources, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China
2
University of Chinese Academy of Sciences, Beijing 100049, China
3
Scientific Research and Popularization Base of Qinghai–Tibet Plateau Biology, Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Xining 810008, China
*
Author to whom correspondence should be addressed.
Plants 2024, 13(6), 885; https://doi.org/10.3390/plants13060885
Submission received: 4 January 2024 / Revised: 14 March 2024 / Accepted: 14 March 2024 / Published: 19 March 2024
(This article belongs to the Special Issue Plant Taxonomy, Systematics, and Phylogeography)
Browse Figures
Versions Notes

Abstract

:
The classification system for the genus Aconitum is highly complex. It is also the subject of ongoing debate. Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz. are perennial herbs of the genus Aconitum. Dried roots of these two plants are used in traditional Chinese medicine. In this study, morphological observations and ISSR molecular markers were employed to discriminate between A. flavum and A. pendulum, with the objective of gaining insights into the interspecies classification of Aconitum. The pubescence on the inflorescence of A. flavum was found to be appressed, while that on the inflorescence of A. pendulum was spread. UPGMA (unweighted pair-group method with arithmetic average) cluster analysis, PCoA (principal coordinates analysis), and Bayesian structural analysis divided the 199 individuals (99 individuals from DWM population and 100 individuals from QHL population) into two main branches, which is consistent with the observations of the morphology of pubescence on the inflorescence. These analyses indicated that A. flavum and A. pendulum are distinct species. No diagnostic bands were found between the two species. Two primer combinations (UBC808 and UBC853) were ultimately selected for species identification of A. flavum and A. pendulum. This study revealed high levels of genetic diversity in both A. flavum (He = 0.254, I = 0.395, PPB = 95.85%) and A. pendulum (He = 0.291, I = 0.445, PPB = 94.58%). We may say, therefore, that ISSR molecular markers are useful for distinguishing A. flavum and A. pendulum, and they are also suitable for revealing genetic diversity and population structure.

Graphical Abstract

1. Introduction

The genus Aconitum, which belongs to the Ranunculaceae family, occurs in temperate regions of the Northern Hemisphere. This genus encompasses about 400 species, including 211 species that are distributed in China, of which 166 are endemic [1]. Despite the fact that most Aconitum species are poisonous, many species have been utilized for medicinal purposes [2,3]. Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz. are perennial herbaceous plants of the genus Aconitum. They are mainly distributed in Qinghai, Gansu, Nei Mongol, southern Ningxia, northwestern Sichuan, and northern Tibet. They grow on grassy slopes and in forest margins at altitudes of 2000–3700 m [1]. A. flavum and A. pendulum are the dominant toxic weeds in the alpine meadows of the Qinghai–Tibet Plateau [4]. They are known to exhibit allelopathic effects. Secretions from their roots, stems, and leaves inhibit the growth of other plants and thus pose a certain level of threat to grassland ecology and to the development of animal husbandry [5]. Additionally, the dried roots of these two plants are used to make one of the most famous Tibetan medicines, namely, Tiebangchui (TBC). To date, a total of 84 alkaloids have been obtained from TBC [6]. Diterpenoid alkaloids, such as aconitine and 3-acetylaconitine, are the characteristic compounds in most of the Aconitum species [7]. These phytochemicals have been shown to exhibit a wide range of pharmacological properties, such as dispelling cold, alleviating pain, and inhibiting bacteria, as well as treating injuries, rheumatic lumbar pain, and chilblains [8,9].
More than 20 Aconitum species are used as sources of TBC because of their morphological similarities and species diversity [6]. To avoid species confusion, only A. flavum and A. pendulum have been approved by the Chinese Pharmacopoeia Commission; these are now listed in the Pharmacopoeia Standards of Ministry of Health of the People’s Republic of China: Tibetan medicine and Qiang and Hui medicines [10,11]. At present, the artificial domestication of Aconitum species is still in its early stages, and commercial demand for A. flavum and A. pendulum is being met mainly by wild resources. With the development and production of new drugs, demand for these species is increasing year by year, and wild resources are declining dramatically due to excessive collection [12]. In addition, because of the need to ensure stability in clinical efficacy, the adulteration of A. flavum and A. pendulum is also a matter of increasing importance today. The hairs on the pedicels are often considered to be among the most important taxonomic characteristics within the Aconitum genus. In the classification of Aconitum species, much attention has been paid to the different types of hairs on the pedicels [13]. These hairs have been considered important evidence by researchers speculating on the origin of hybrids [14]. A. flavum and A. pendulum are closely related in terms of their morphologies [15], and species delimitation is difficult to achieve using the naked eye. Traditionally, morphological characteristics have been utilized for species classification within the Aconitum genus. However, more accurate identifications and phylogenetic analyses of closely related species can be obtained using molecular methods [16].
Studies on A. flavum and A. pendulum have mainly focused on their chemical composition, pharmacological properties, and toxic effects [12,17]. Consequently, little is known regarding their species differentiation and genetic diversity. Inter-simple sequence repeat (ISSR) has been widely used for genetic diversity and plant breeding in various plant species [18,19,20,21], including Mentha L. [22], Hypericum L. [23], Ammopiptanthus nanus [24], and Habenaria dentata [25]. ISSR utilizes primers with designs based on the repeating motif (microsatellite) of the eukaryotic genome, without prior knowledge of the DNA sequence [26,27]. Because of the higher annealing temperatures and longer sequences of ISSR primers, they exhibit good stability and high polymorphism. ISSR might also be used to address taxonomic and systematic issues [22,28]. Cheng et al. [29] demonstrated that ISSR was more effective in identifying Alcea species. ISSR was also used by Akhta et al. [30] to identify different species of the genus Jasminum from Pakistan. In addition, ISSR has been employed to investigate genetic diversity in Aconitum species such as A. kongboense L. [31], A. leucostomum Worosch [32], and A. carmichaeli [33]. Although the two Aconitum species have medicinal and commercial value, they are often used without species identification. The ability to distinguish the two species could result in improved medicinal potential, quality control, and stability in commercial products containing material from these plants. However, to the best of our knowledge, there have been no published reports on the genetic diversity in A. flavum and A. pendulum.
Due to the apparently similar morphologies and the overlapping geographical distributions of A. flavum and A. pendulum, the boundary between the two species is unclear. Increasingly, researchers are asking whether the two species might be the same. Based on the ITS sequence, Luo et al. [34] showed that A. flavum and A. pendulum were not sister groups. In contrast, A. flavum and A. pendulum were identified as sister groups from 25 morphological characters by the authors of Cui et al. [35]. After conducting chloroplast genome and whole-genome SNP analyses, Li [36] proposed that A. flavum and A. pendulum should be merged into one species. Additionally, Ren [37] recommended that A. hezuoense and A. lianhuashanicum should be treated as synonyms for A. flavum. In light of the previous research, we sought to prove whether or not A. flavum and A. pendulum are the same species by means of morphological observation and molecular analysis.
The main objectives of this study were as follows: (1) to identify A. flavum and A. pendulum by observing morphologies of pubescence on inflorescence characters and ISSR markers, and (2) to assess genetic diversity and genetic variation in A. flavum and A. pendulum.

2. Results

2.1. Identification of Morphologies of Pubescence on Inflorescence

In the classification of the genus Aconitum, hairs on the pedicels are often regarded as important taxonomic traits. In the present study, to identify A. flavum and A. pendulum, morphologies of the hairs on the rachis and pedicels were observed with a stereoscopic microscope (Figure 1). We found that the rachis and pedicels of A. flavum are covered with densely appressed pubescence, which are generally white in color. The stem of A. flavum is basally glabrous; it is also apically retrorse and appressed pubescent. In A. pendulum, the rachis and pedicels have densely spread pubescence, which are yellow in color. The stem of A. pendulum is basally glabrous; it is also apically sparse and spreading yellow pubescent. The most important difference between these two species concerns the spreading hairs in inflorescence. In A. flavum, these are appressed; in A. pendulum, they are spread. During specimen observation, no intermediate forms were found.

2.2. Individual Identification and Validation

Figure 2 presents a dendrogram obtained using the unweighted pair-group method with arithmetic average (UPGMA), based on a Jaccard genetic similarity coefficient and 11 ISSR primers. The individuals were divided into two groups. Group I included 99 individuals of A. flavum; group II contained all 100 individuals of A. pendulum. The genetic relationships among 199 genotypes were also visualized using PCoA (principal coordinates analysis); the extent of the relatedness and disparity among the genotypes is shown in Figure 3. The PCoA plot produced two major clusters which were clearly separated, and this plot supported the results of the UPGMA cluster analysis. In addition, the relationships among individuals were further examined using STRUCTURE (Figure 4), and similar results were obtained. Bayesian cluster analysis partitioned all the individuals into two distinct groups (Figure 4B). The highest peak in ΔK revealed the best value for K = 2 (ΔK = 126.151) (Figure 4A). This was confirmed by results obtained using BAPS (Bayesian analysis of population structure). The number of clusters in optimal partition assignment with BAPS was determined as K = 2 (Figure S1), with a log marginal likelihood of optimal partition of −32,586.38, and with posterior probability reaching its highest value (~1). The results of the Bayesian cluster analysis were in line with the UPGMA clustering and the PCoA plot. Taken together, the results showed that the two species (A. flavum and A. pendulum) could be clearly divided into two branches via ISSR molecular markers. We may say, therefore, that ISSR molecular primers can be used to identify individuals of these two species.
Initially, we sought to identify distinctive bands for A. flavum and A. pendulum via the process of band selection. However, no diagnostic bands were found between these two species. More seriously still, no single specific primer was found between A. flavum and A. pendulum. Finally, the two primer combinations UBC808 and UBC853 were used to identify the two species. The UPGMA dendrogram based on the genetic similarity coefficient then revealed that all individuals could be clustered into two well-defined and separate groups (Figure 5).
Subsequently, a standard database was established using two primer combinations (UBC808 and UBC853) for species identification of A. flavum and A. pendulum. Sixty-nine blind individuals from four populations (B, BM, GQ, SL populations) were tested to determine whether they were A. flavum or A. pendulum using the established identification system.
The results indicated that the blind individuals from the B and BM populations were clustered into the branch of A. flavum (Figure S2A). The blind individuals from the GQ and SL populations were clustered into the branch of A. pendulum (Figure S2B). This further confirmed that the selected primer combinations (UBC808 and UBC853) could effectively identify A. flavum and A. pendulum using ISSR molecular markers.

2.3. ISSR Genetic Diversity Analysis

A total of 11 primers with high repeatability and good polymorphism were selected for ISSR–PCR amplification. Details of these primers are presented in Table S1. A photograph of gel electrophoresis was presented in Figure S3. For 135 individuals of A. flavum, 193 bands were amplified, with 185 polymorphic bands (PPB = 95.85%). The PPB ranged from 78.57% (UBC811) to 100% (UBC824, UBC825, UBC826, UBC846, UBC887, and UBC890). For 133 individuals of A. pendulum, 203 bands were amplified, of which 94.58% were polymorphic bands, resulting in an average of 17.45 polymorphic bands per primer. The PPB of A. pendulum ranged from 82.35% (UBC807) to 100% (UBC824, UBC825, UBC826, UBC846, UBC853, and UBC887).
Details of genetic diversity parameters are presented in Table 1. Genetic diversity in A. pendulum (PPB = 94.58%, He = 0.291 ± 0.160, I = 0.445 ± 0.209) was slightly higher than that in A. flavum (PPB = 95.58%, He = 0.254 ± 0.170, I = 0.395 ± 0.223). Genetic variation among A. pendulum populations (Gst = 0.342) was higher than among A. flavum populations (Gst = 0.252). Gene flow in A. flavum (Nm = 1.488) was higher than in A. pendulum (Nm = 0.961). The fixation index in A. pendulum (Fst = 0.375) was higher than in A. flavum (Fst = 0.303).
AMOVA analysis indicated that most of the genetic differentiation was distributed within populations (69.66% in the case of A. flavum, 62.52% in the case of A. pendulum) (Table S2). AMOVA testing also revealed significant differentiation among and within populations (p < 0.001, Table S2). A similar result was obtained from the HICKORY calculation: interspecies differentiation (θB) was found to be 0.265 under the f = full model, which had the smallest DIC value (Table S3), and a corresponding f value of 0.554. Additionally, gene flow (Nm = 4.619) was calculated based on Gst.

3. Discussion

The taxa of the genus Aconitum are considered to be complicated and controversial because of the morphological similarities among species. The relationship between A. flavum and A. pendulum is especially noteworthy in this regard. Previous studies have revealed that the main phenotypic differences between A. flavum and A. pendulum involve the spreading hairs on the rachis and pedicels [14]. In the present study, A. flavum and A. pendulum were clearly distinguished through stereomicroscopy. The spreading hairs on the inflorescence of A. flavum were found to be appressed, while those of A. pendulum were spread. This result demonstrated that these qualitative characteristics could be used to effectively differentiate between the two species. In recent years, numerous studies on the classification and phylogeny of Aconitum have been conducted based on ITS, cpDNA, complete plastomes, and other molecular markers [38,39,40]. Aconitum is generally divided into three subgenera: A. subgenus Aconitum, A. subgenus Lycoctonus, and A. subgenus Gymnaconitum [41]. Among these subgenera, A. subgenus Aconitum is the most widespread and diverse; it encompasses numerous species and exhibits complex morphological variations. Further subdivision of this subgenus therefore involves significant challenges [42]. In the A. subgenus Aconitum, A. flavum, A. pendulum, A. liangshanicum, and A. brachypodum are classified under ser. Brachypoda W. T. Wang. A chemical composition analysis has shown that A. flavum, A. pendulum, and A. polyschistum of the ser. Brachypoda exhibit highly evolved aconitine-type diterpenoid alkaloids, indicating a close genetic relationship between them [2]. In addition, seed morphology has revealed that the seeds of ser. Brachypoda have three longitudinal ridges and a relatively smooth surface, suggesting that A. flavum and A. pendulum might belong to the same natural group [43]. Furthermore, studies of the chloroplast genomes of A. flavum and A. pendulum reveal only slight differences between the two, suggesting a close genetic relationship between the two species [44,45]. All these studies demonstrated a close relationship between the two species. To date, however, no method of carrying out species identification has been reported with respect to A. flavum and A. pendulum.
Based on the ITS sequence, Luo et al. showed that A. flavum and A. pendulum are not sister groups [34]. The limited amount of DNA in the ITS may not be sufficient to resolve the phylogeny of aconites. On the other hand, ISSR molecular marker technology, which is based on the highly repetitive sequences found in eukaryotic genomes, provides additional genomic information. Due to its longer primer sequences and higher annealing temperature, ISSR can generate reliable, highly polymorphic, and reproducible amplification bands. ISSRs segregate mostly as dominant markers following simple Mendelian inheritance. However, they have also been shown to segregate as co-dominant markers in some cases, thus enabling the distinction between homozygotes and heterozygotes [21,28,30]. There are some indications that ISSR could be used to identify species. The ISSR results obtained by the authors of Boydak et al. [46] supported the idea that the well-known date palms Phoenix theophrasti and P. dactylifera are different species. The ISSR marker system has also been used to determine molecular differences between two species of cotton [28]. In light of these findings, ISSR was used in the present work to study the relationships of different individuals from A. flavum and A. pendulum. UPGMA cluster analysis, PCoA analysis, and Bayesian structural analysis divided the 199 individuals into two main branches consistent with the morphological results. There were significant genetic variations between the two species (Fst = 0.259, p < 0.001; Table S2). Additionally, a standard database was established by two primer combinations (UBC808 and UBC853) for species identification of A. flavum and A. pendulum. The authentications of blind individuals were identified, based on the database. The ISSR identification system for A. flavum and A. pendulum demonstrates strong accuracy.
The Qinghai–Tibet Plateau is regarded as a global biodiversity hotspot on account of its abundant biological diversity. Genetic diversity is fundamental for biodiversity, and protecting genetic diversity is crucial for the long-term survival of any species in a constantly changing environment [47,48]. ISSR molecular markers can be used to estimate genetic diversity and genetic structure within and between species. In the present study, 135 samples of A. flavum and 133 samples of A. pendulum were distinguished using 11 ISSR primers, and their relationship was elucidated. The results indicated a relatively high level of genetic diversity in both A. flavum (He = 0.254, I = 0.395, PPB = 95.85%) and A. pendulum (He = 0.291, I = 0.445, PPB = 94.58%), compared with other Aconitum species (A. firmum He = 0.209, PPB = 50.30%; A. lasiocarpum He = 0.196, PPB = 43.00% [49]; A. bucovinense He = 0.080, I = 0.148, PPB = 69.77% [50]). We may state several possible reasons for the high genetic diversity of A. flavum and A. pendulum, which are the dominant species in high-altitude meadows. Firstly, the wide distribution range and long lifespans of A. flavum and A. pendulum contribute to their high genetic diversity. They are long-lived perennial herbaceous plants that are distributed in Qinghai, Gansu, Nei Mongol, Southern Ningxia, northwestern Sichuan, and northern Tibet [1]. Secondly, the genetic diversity of plants is also affected by their mating systems. Previous studies have indicated that the breeding system of A. flavum involves outcrossing determined by pollen–ovule ratios [51]. In addition, a S–RNase-based self-incompatibility system was found in A. pendulum by the authors of Li et al. [52]. We may say, then, that an outcrossing breeding system contributes to the high genetic diversity of the two species. It should also be stated that these species can produce many winged seeds which are spread by wind. Moreover, they can reproduce not only from seeds [53] but also by means of vegetative reproduction [54]. Finally, we note that, in recent years, due to both artificial introduction and natural reproduction, the distribution range of A. flavum and A. pendulum has expanded. This has contributed to a greater flow of genes between populations, resulting in a still higher level of genetic diversity.

4. Materials and Methods

4.1. Plant Materials

A total of 268 individuals from six populations were collected from Qinghai Province in China during July and August 2020 (Table 2). Specifically, 99 individuals of population DWM and 100 individuals of population QHL were used as samples to establish a species identification method. The remaining 69 individuals, from DWB, BM, GQ, and SL populations, were used as blind samples to validate the reliability of the ISSR marker. Healthy young leaves collected from individuals were dried in silica gel before genomic DNA extraction. All voucher specimens were deposited at room temperature in the Herbarium of the Northwest Institute of Plateau Biology (HNWP), Chinese Academy of Sciences. Then, they were used for microscopic morphology observation in our laboratory.

4.2. Microscopic Morphological Observation

The hairs on the pedicels of A. flavum and A. pendulum specimens were observed with a stereoscopic microscope (SteREO Discovery V12, Zeiss, Oberkochen, Germany) and photographed in our laboratory, during June and July 2021. In total, 140 voucher specimens (only the hairs on the pedicels) were observed under the microscope.

4.3. Genomic DNA Extraction

In our laboratory, genomic DNA was extracted using the modified CTAB method [55,56] in 2021 and 2022. The concentration and purity of the extracted DNA were determined by spectrophotometer using NanoDrop 2000c (Thermo Scientific, Waltham, MA, USA) equipment and 0.8% agarose gel. The isolated genomic DNA was diluted to 30 ng/µL and stored at −20 °C for ISSR amplification.

4.4. ISSR Amplification

One hundred primers from the University of British Columbia primer set 9 (University of British Columbia, primer set #9) were initially screened for PCR amplification, and eleven primers that generated clear and reproducible banding patterns were chosen for the final analysis. PCR amplifications were conducted in a 20 µL reaction volume containing 30 ng of genomic DNA, 2 µL of 10 × PCR buffer (Mg2+ plus), 0.25 mM of dNTP, 10 µM of primer, and 0.6 U of Taq DNA polymerase (TaKaRa Biotech Co., Ltd., San Jose, CA, USA). ISSR–PCR amplifications were conducted using a C1000 Touch Thermal Cycler (Bio-Rad, Hercules, CA, USA). The amplification conditions were as follows: an initial denaturation step at 95 °C for 4 min, followed by 38 cycles of denaturation at 95 °C for 30 s, annealing at 50–60 °C for 45 s (refer to Table S1 for specific details), and extension at 72 °C for 90 s. A final extension step at 72 °C for 7 min was then performed. The amplified products were separated on a 1.2% agarose gel and visualized using the ChemiDocTM MP Imaging System (Bio-Rad, Hercules, CA, USA). To ensure the reliability of the ISSR, two replicates for each PCR were produced in the lab.

4.5. Data Analysis

Only clearly identifiable and reproducibly amplified ISSR bands were designated as present (1) or absent (0). The resulting binary data matrix was subjected to analysis using POPGENE 1.32 version [57] to estimate the level of genetic diversity assuming the Hardy–Weinberg equilibrium. Genetic diversity within and among species was measured by the percentage of polymorphic bands (PPB), the observed number of alleles (Na), the effective number of alleles (Ne), Nei’s gene diversity (He) [58], and Shannon’s information index (I). Gene differentiation between species was assessed by the coefficient of gene differentiation (Gst), and gene flow (Nm) was assessed by Gst [59]. In order to test the genetic relationship between individuals, an unweighted pair-group method with arithmetic average (UPGMA) dendrogram was constructed based on the Jaccard coefficient using the program NTSYSpc version 2.2 [60]. PCoA (principal coordinates analysis) based on the Jaccard coefficient was performed to ordinate relationships among individuals of A. flavum and A. pendulum.
To correct the possible bias in the Hardy–Weinberg equilibrium, the Bayesian genetic diversity (HB) and population differentiation (θB) were also calculated using HICKORY version 1.1 with the Bayesian method [61]. Using this Bayesian approach, neither the Hardy–Weinberg equilibrium within populations nor the treatment of multilocus ISSR phenotypes as haplotypes were assumed [62,63], but full advantage could be taken of the information provided by dominant markers. Several runs were carried out with default sample parameters (burnin = 5000, sample = 100,000, thin = 20) to ensure consistency of results. Model selection was based on the Deviance Information Criterion (DIC). Models with smaller DICs are preferred. In addition, we used two Bayesian methods to determine the genetic structures of A. flavum and A. pendulum. In the first method, population structures within A. flavum and A. pendulum samples were inferred using a Bayesian model clustering algorithm implemented in the computer program STRUCTURE version 2.3 [64]. This method uses a Markov Chain Monte Carlo (MCMC) algorithm to cluster individuals into populations based on multi-locus genotype data [65]. We tested the assignment of individuals into one to six genetic clusters (K = 1–6) using the admixture model with correlated allele frequencies. The analysis of each cluster consisted of 8 independent runs of 10,000 MCMC replicates following an initial burn-in of 10,000. To estimate the number of clusters, we used the ΔK [65] and the Ln Pr (X|K) plot methods [66], both calculated with the STRUCTURE HARVESTER [67] online software (http://taylor0.biology.ucla.edu/structureHarvester/). The algorithm used by STRUCTURE may be poorly suited for inferring the number of genetic clusters in a data set that has an isolation by distance relationship [65,68]. Therefore, we used BAPS (Bayesian analysis of population structure) version 6.0 [69,70], based on the Bayesian clustering method, to confirm the STRUCTURE result. In contrast with STRUCTURE, this method uses stochastic optimization to infer the genetic structure [68]. The BAPS program estimates the structure of populations by clustering individuals into groups. We considered individuals from one locality as one population sample (one group). Ten independent repetitions for each K from 1 to 2 were carried out. Arlequin version 3.1 was used to calculate the genetic differentiation index (Fst) to further reveal the pattern of genetic differentiation between populations [71]. Fst is also a representation of population differentiation and genetic distance; the larger the index, the greater the differentiation. The statistical testing of variance components was conducted using nonparametric randomization tests with 1000 permutations.

5. Conclusions

In this study, we used a combination of morphological and molecular marker methods to confirm that A. flavum and A. pendulum are indeed two distinct species. Microscopic observations indicated that the spreading hairs on the inflorescence of A. flavum are appressed, while they are spread in A. pendulum. Additionally, A. flavum and A. pendulum were effectively identified using ISSR markers. Two primer combinations UBC808 and UBC853 successfully distinguished A. flavum from A. pendulum. Finally, a high level of genetic diversity in A. flavum and A. pendulum was detected via ISSR markers. This is the first time that ISSR molecular markers have been used to analyze the genetic diversity and structure of A. flavum and A. pendulum. The established identification system could provide a solid foundation for distinguishing A. flavum and A. pendulum.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/plants13060885/s1, Figure S1: Results of BAPS analysis for two species of Aconitum; Figure S2: UPGMA clustering on verification of blind individuals (UBC808 and UBC853): (A) blind individuals from DWB and BM; (B) blind individuals from GQ and SL. Green represents A. flavum individuals; red represents A. pendulum individuals; Figure S3: ISSR profiles of A. flavum and A. pendulum generated with primer UBC853: (A) DWB population; (B) QHL population; M = 100 bp + 200 bp TaKaRa DNA Ladder; Table S1: Summary of banding profile and polymorphism revealed by 11 ISSR primers; Table S2: Analysis of molecular variance (AMOVA) for ISSR variation surveyed in six populations of A. flavum (3) and A. pendulum (3); Table S3: Genetic differentiation among species calculated using different Bayesian approaches.

Author Contributions

Conceptualization, Y.H. and Y.L.; methodology, J.S.; software, J.S. and Q.S.; validation, Y.H. and Y.L.; formal analysis, W.L. and X.L.; investigation, Y.H. and W.L.; resources, Y.H. and Y.Z.; data curation, J.S.; writing—original draft preparation, J.S.; writing—review and editing, Y.H.; visualization, Y.L.; supervision, Y.H.; project administration, Y.H.; funding acquisition, Y.H. All authors have read and agreed to the published version of the manuscript.

Funding

This research study was funded by the Natural Science Foundation of Qinghai Province (2024–ZJ–915) and the West Light Foundation of the Chinese Academy of Sciences (to Y.H.), as well as by a Joint Grant from Chinese Academy of Sciences–People’s Government of Qinghai Province on Sanjiangyuan National Park (LHZX–2020–09).

Data Availability Statement

Data are available upon request from the corresponding authors.

Conflicts of Interest

The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.

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Plants 13 00885 g001
Figure 1. Hairs on the rachis and pedicels of A. flavum and A. pendulum: (A) rachis of A. flavum; (B) pedicels of A. flavum; (C) rachis of A. pendulum; (D) pedicels of A. pendulum.
Figure 1. Hairs on the rachis and pedicels of A. flavum and A. pendulum: (A) rachis of A. flavum; (B) pedicels of A. flavum; (C) rachis of A. pendulum; (D) pedicels of A. pendulum.
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Plants 13 00885 g002
Figure 2. Results of UPGMA clustering based on 11 ISSR primers, performed on 199 individuals of A. flavum and A. pendulum: green represents A. flavum individuals (1–99); red represents A. pendulum individuals (100–199).
Figure 2. Results of UPGMA clustering based on 11 ISSR primers, performed on 199 individuals of A. flavum and A. pendulum: green represents A. flavum individuals (1–99); red represents A. pendulum individuals (100–199).
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Figure 3. Principal coordinates plot showing patterns of separation among 199 individuals of A. flavum and A. pendulum: green represents A. flavum individuals (1–99); red represents A. pendulum individuals (100–199).
Figure 3. Principal coordinates plot showing patterns of separation among 199 individuals of A. flavum and A. pendulum: green represents A. flavum individuals (1–99); red represents A. pendulum individuals (100–199).
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Figure 4. Bayesian inference of the number of clusters (K) in A. flavum and A. pendulum: (A) K was estimated from plots of ad hoc posterior probability models of ΔK; (B) Bayesian admixture proportions (q) of individuals of A. flavum and A. pendulum for K = 2.
Figure 4. Bayesian inference of the number of clusters (K) in A. flavum and A. pendulum: (A) K was estimated from plots of ad hoc posterior probability models of ΔK; (B) Bayesian admixture proportions (q) of individuals of A. flavum and A. pendulum for K = 2.
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Figure 5. Results of UPGMA clustering of 199 individuals based on UBC808 and UBC853: green represents A. flavum individuals (1–99); red represents A. pendulum individuals (100–199).
Figure 5. Results of UPGMA clustering of 199 individuals based on UBC808 and UBC853: green represents A. flavum individuals (1–99); red represents A. pendulum individuals (100–199).
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Table 1. Genetic diversity and differentiation in A. flavum and A. pendulum based on ISSR marker system.
Table 1. Genetic diversity and differentiation in A. flavum and A. pendulum based on ISSR marker system.
Pop IDHe *IPPBGstNmFst
DWM0.230 ± 0.1870.354 ± 0.25780.31%---
DWB0.219 ± 0.1900.334 ± 0.26868.91%---
BM0.148 ± 0.1950.221 ± 0.28140.93%---
A. flavum0.254 ± 0.1700.395 ± 0.22395.85%0.2521.4880.303
QHL0.278 ± 0.1710.424 ± 0.23188.18%---
GQ0.127 ± 0.1900.188 ± 0.27633.00%---
SL0.129 ± 0.1920.191 ± 0.27634.48%---
A. pendulum0.291 ± 0.1600.445 ± 0.20994.58%0.3420.9610.375
* He—Nei’s gene diversity; I—Shannon’s information index ( = − ∑ P i log 2 P i , where P i is initial frequency for the ith allele); PPB—percentage of polymorphic bands; Gst—coefficient of gene differentiation ( = ( H t − H s ) / H t ); Nm—gene flow ( = ( 1 − G st ) / 2 G st ); Fst—fixation index ( = ( σ a 2 + σ b 2 ) / σ 2 , where σ a and σ b are the expected value of the variance components between groups and within groups, respectively, with σ being the total of genetic variation).
Table 2. Sampling information for A. flavum and A. pendulum.
Table 2. Sampling information for A. flavum and A. pendulum.
Collection SitePopulationLongitude (E)Latitude (N)Altitude (m) 2Sample SizeMaterial
Dawu, Maqin county, Golog PrefectureDWM 1100°17′3″34°25′50″376299Identification
Dawu, Maqin county, Golog PrefectureDWB100°17′3″34°25′50″376220Verification
Banma county, Golog PrefectureBM100°43′22.80″32°43′22.80″411416Verification
Gangcha county, Haibei PrefectureQHL100°14′48″37°25′22″3510100Identification
Guoqing pasture, Yushu city, Yushu PrefectureGQ96°51′17.52″32°58′48.60″439318Verification
Sulu, Zaduo county, Yushu PrefectureSL95°9′55.14″32°33′19.20″451815Verification
1 DWM—Meadow of Dawu; DWB—Bareground of Dawu; BM—Banma; QHL—Gangcha; GQ—Guoqing pasture; SL—Sulu; 2 altitude (m)—meters above sea level.
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Sun, J.; Sun, Q.; Li, X.; Li, W.; Li, Y.; Zhou, Y.; Hu, Y. Species Identification and Genetic Diversity Analysis of Medicinal Plants Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz. Plants 2024, 13, 885. https://doi.org/10.3390/plants13060885

AMA Style

Sun J, Sun Q, Li X, Li W, Li Y, Zhou Y, Hu Y. Species Identification and Genetic Diversity Analysis of Medicinal Plants Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz. Plants. 2024; 13(6):885. https://doi.org/10.3390/plants13060885

Chicago/Turabian Style

Sun, Jing, Qing Sun, Xin Li, Wenjing Li, Yi Li, Yubi Zhou, and Yanping Hu. 2024. "Species Identification and Genetic Diversity Analysis of Medicinal Plants Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz." Plants 13, no. 6: 885. https://doi.org/10.3390/plants13060885

APA Style

Sun, J., Sun, Q., Li, X., Li, W., Li, Y., Zhou, Y., & Hu, Y. (2024). Species Identification and Genetic Diversity Analysis of Medicinal Plants Aconitum pendulum Busch and Aconitum flavum Hand.-Mazz. Plants, 13(6), 885. https://doi.org/10.3390/plants13060885

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