2. Materials and Methods
2.1. Reagents and Sources
The following reagents, obtained from sources indicated, were used: Primary rat podocytes for culture and appropriate culture medium (Celprogen, Torrance, CA, USA), Iron Protoporhyrin IX (Heme, hemin, Tocris BioScience, Minneapolis, MN, USA), RIPA lysis/extraction buffer (Thermo Fisher Scientific, Grand Island, NY, USA), TRIzol reagent (Thermo Fisher Scientific), LDH-Glo cytotoxicity assay (Promega, Madison, WI, USA), Mycozap-Plus (Lonza, Durham, NC, USA), anti-rat CD32 FcγII receptor antibody (BD Pharmingen, San Jose, CA, USA), anti-rat Fx1A antibody (Avantor, Radnor, PA, USA), anti-rat HO-1 antibody (StressMarq, Vicroria, BC, Canada), anti-rat CD55 antibody (Hycult Biotech, Uden, The Netherlands), cDNA synthesis Kit (BioRad, Hercules, CA, USA), SsoAdvanced Universal SYBR Green Supermix (BioRad), TrypLE Express enzyme (Thermo Fisher Scientific), spin column-based RNA extraction kits (BioRad), siRNA duplexes targeting the rat hmox1 gene (Thermo Fisher Scientific), Lipofectamine RNAi-Max transfection reagent (Themo Fisher Scientific), SiRNA negative control (Thermo Fisher Scientific), Silencer Select GAPDH positive control (Thermo Fisher Scientific), fluorescent transfection control (Thermo Fisher Scientific), RT-qPCR primers for rat HO-1, CD55 and GAPDH (BioRad).
2.2. Podocyte Cultures, Incubations with Heme (Hemin) and Assessment of Cytotoxicity
Rat podocytes were cultured in low glucose Dulbecco’s modified Eagle’s medium (DMEM) containing 10% FBS media and incubated at 37 °C in a humidified incubator environment with 5% CO2, until 80% confluence. Preservation of podocyte identity in culture was confirmed by assessing expression of nephrin and the Fx1A antigenic complex using either flow cytometry or Western blotting performed in total protein extracted using the RIPA lysis buffer (30 mM HEPES, pH 7.4, 150 mM NaCl, 1% Nonidet P-40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulfate, 5 mM EDTA, 1 mM NaV04, 50 mM NaF, 1 mM PMSF, 10% pepstatin A, 10 μg/mL leupeptin and 10 μg/mL aprotinin). In heme incubation experiments, podocytes were passaged, plated in DMEM media containing 10% FBS and treated with varying concentrations (0, 5, 10, 50, 100 µM) of the natural HO substrate/inducer Iron Protoporhyrin IX (FePPIX, heme) used as hemin formulation for 18 h. Hemin was dissolved at 1 mM concentration in dimethylsulfoxide (DMSO) and introduced in cultured cell media at final sub cytotoxic concentrations as determined by the LDH release assay, and by live cell imaging using an ImageXpress Pico Microscopy system (Molecular Devices, San Jose, CA, USA). To perform the LDH release assay, cells were plated in DMEM media containing 10% FBS and treated with varying concentrations (0, 5, 10, 50, 100 µM) of hemin for 18 h. Media samples from each flask were removed and diluted into lactate dehydrogenase (LDH) assay buffer. LDH activity was measured by combining 50 μL diluted sample with 50 μL LDH Detection Reagent. Relative luminescence (RLU) of each sample was measured using a GloMax Luminometer (Promega, Madison, WI, USA) after a Linear Range of LDH positive control standard curve was constructed.
2.3. Flow Cytometry and Western Blotting
Primary podocytes were cultured in 6-well plates (0.3 × 106 seeding density) in DMEM media supplemented with 10% FBS and antibiotics (MycoZap Plus, Lonza, Durham, NC, USA) and incubated at 37 °C in a humidified incubator environment with 5% CO2, until 80% confluence. Podocytes were then passaged and allowed to incubate in starvation media for 24 h prior to addition of varying concentrations of heme (hemin) (dissolved in DMSO, final vol/vol 0.25%, and used at final concentrations of 0, 5 and 10 µM) for 24 h. At completion of incubations, podocyte counts were performed and aliquots of 3 × 106 cells/mL were resuspended in 50 µL PBS/1% BSA, blocked with antibodies reacting with rat CD32 FcγII receptor (BD Pharmingen) for 5 min and incubated with FITC (Fluorescein Isothiocyanate)-labeled antibody (Avantor) against the podocyte marker, Fx1A, or with Alexa Fluor (AF647) labeled anti-rat HO-1 antibody (StressMarq) at 1:1250-fold dilution or with FITC-labeled anti-rat CD55 antibody (Hycult) at 1:2000 fold dilution. HO-1 expression was analyzed in cells within the Fx1A gate. Isotype controls, unstained cells and an open channel were used to identify and calibrate for autofluorescence. In some experiments, cultured podocytes were fixed and permeabilized with 4% formaldehyde solution. Cells were then directly stained with a AF647-conjugated anti-HO-1 antibody at 1250-fold dilution or a FITC-conjugated anti-CD55 antibody at 2000-fold dilution. The Amnis FlowSight imaging cytometer (Luminex Corporation, Austin, TX, USA) that detects brightfield cell morphology, darkfield and fluorescent images was used in all flow cytometry experiments. Events captured were 5000 for samples with either AF647-conjugated anti-rat HO-1 antibody or FITC-conjugated anti-rat CD55 antibody, 1000 in compensation sample for each of these conjugated antibodies and 5000 for unstained sample.
To identify HO-1 and CD55 proteins by Western blotting, podocyte protein lysates were resolved by sodium dodecyl sulphate-polyacrylamide electrophoresis (SDS-PAGE), transferred onto polyvinylidene difluoride (PVDF) membrane, and probed with primary antibodies overnight at 4 °C. Horseradish peroxidase-conjugated secondary antibodies were used for detection and a chemiluminescence substrate (ECL reagent, Santa Cruz Biotechnology Dallas, TX, USA) was used for visualization. Equal total protein loading was determined by probing membranes for β-actin.
2.4. Real-Time Quantitative PCR (RT-qPCR)
Total RNA was extracted from cultured podocytes using the TRIzol (guanidinium thiocyanate-phenol-chloroform) reagent. RNA quality and concentration were assessed by spectrophotometry [ultraviolent (UV) absorbance at 260 and 280 nm] and agarose gel electrophoresis. Reverse Transcription for cDNA synthesis was performed on 5 µg RNA isolated from cultured podocytes incubated with 0 µM, 5 µM, or 10 µM heme (hemin). The iScript reverse transcription cDNA synthesis Kit for RT-qPCR (BioRad) was used for first-strand cDNA synthesis. The SsoAdvanced Universal SYBR Green Supermix (BioRad) was used to provide increased resistance to various PRC inhibitors and enhance sensitivity. RT-qPCR was performed on a CFX Connect RT-PCR system (BioRad).
The PrimePCR SYBR Green Assay designed for rat Hmox1 (BioRad, assay ID: qRnoCID0009344) was used to assess changes in Hmox1 gene expression (validation data: NCBI reference sequence accession number: NM_012580.2; UniGene ID: Rn.3160; Ensembl Gene ID: ENSRNOG00000014117.8; Entrez Gene ID: 24451; Amplicon Context Sequence: TCTGAGTTCATGAGGAACTTTCAGAAGGGTCAGGTGTCCAGGGAAGGCTTTAAGCTGGTGATGGCCTCCTTGTACCATATCTATACGGCCCTGGAAGAGGAGATAGAGCGAAACAAGCAGAACCCA; amplicon length: 96; chromosome location: 19:25624663-25625614).
The PrimePCR SYBR Green Assay designed for rat CD55 (DAF) (BioRad, assay ID: qRnoCID0009105) was used to assess changes in Cd55 gene expression (validation data: NCBI reference sequence accession number: NM-022269; UniGene ID: Rn.18841; Ensembl Gene ID: ENSRNOG00000003927; Entrez Gene ID: 64036; Amplicon Context Sequence: CCTGAATTAGACTCTCCTCTGTCTTTAGATGTTCTCGTTGGATGACGTACCGTTGTCTTGGAAACAGGTACATGCTGTGTTGCT GGAACTTTAACTTCAGTG GG CTTGTGAGACGTTGGTTTGACTCTT GTACCTGGAACTTTA; amplicon length: 114; chromosome location: 13:52189045-52191413).
Gapdh expression was used a reference gene for data normalization. The PrimePCR SYBR Green Assay designed for rat Gapdh (BioRad assay ID: qRnoCED0006459) was used (validation data: NCBI reference sequence accession number: NM_023964; UniGene ID: Rn.64496; Ensembl Gene ID: ENSRNOG00000021009; Entrez Gene ID: 66020; Amplicon Context Sequence: AGGAAACAAGCTTCACGAAGTTGTCATTGAGGGCAATTCCAGCCTTAGCATCAAAGATGGAAGAATGGGAATCGCCATTAAAGTCCGTGGAGACCACCT GGTCCTCTG; amplicon length: 78; chromosome location: 1:90335282-90336909).
GAPDH is a heme chaperone that allocates labile heme in cells, and no effects of heme on GAPDH mRNA level were reported. Therefore, changes in GAPDH mRNA levels in cells incubated with heme were not assessed.
Cycling PCR conditions were: activation at 95 °C (2 min, 1 cycle), template denaturation at 95 °C (5 s, 40 cycles), annealing/extension at 60 °C, (30 s, 40 cycles), melt curve at 65–95 °C (5 s/step/0.5 °C increments, 1 cycle). To measure changes in expression of HO-1, CD55 and GAPDH, standard curves were generated using a 10-fold dilution of template amplified and each dilution was assayed in duplicate. Amplification curves of the template (HO-1, CD55 and GAPDH) dilution series and standard curves with Cq values plotted against the log of starting template quantity for each dilution were constructed and results were expressed as HO-1 or CD55 gene expression relative to that of GAPDH (ΔΔCq Livak method).
2.5. Post-Transcriptional Silencing of Constitutive HO-1 Gene Using RNA Interference (HO-1 RNAi)
Primary rat podocytes (source: Celprogen; Catalogue number: Sku12122-14; Torrance, CA, USA) were cultured in low glucose DMEM supplemented with 10% FBS and MycoZap Plus antibiotic solution (Lonza Bioscience, Durham, NC, USA) and incubated at 37 °C in a humidified incubator environment with 5% CO2, until 80% confluence (~6.7 × 106 cells). Cells were then dissociated using TrypLE Express enzyme (Thermo Fisher Scientific), to minimize cell damage that could occur when trypsin-based dissociation solutions are used and resuspended in DMEM supplemented with 10% FBS. Cells in suspension were seeded (0.3 × 106 seeding density) into each well of a 6-well plate and allowed to grow to 50% confluency. To optimize concentrations of siRNA duplexes and of transfection reagent volumes that could achieve HO-1 heme silencing, cells were incubated for 48 h in DMEM media containing 10% FBS and varying concentrations of pre-designed siRNA duplexes (10 nM, 30 nM, 50 nM) targeting the rat hmox1 gene (NCBI reference sequence: NM_012580.2; GenBank: BC091164.1) (Thermo Fisher). Defined concentrations of siRNA duplexes (10 nM, 30 nM, 50 nM) were dissolved in Lipofectamine RNAi-Max transfection reagent (4 µL, 5.5 µL, and 7.5 µL) to form RNAi duplex–Lipofectamine RNAiMAX complexes. Both siRNA duplexes and RNAi transfection reagents were dissolved in Opti-MEM reduced serum media (Thermo Fisher) designed to optimize cationic lipid-based transfections. The RNAi duplex-Lipofectamine RNAiMAX complexes were added to each well at final volume of 3 µL. At completion of incubations, cells were homogenized using TrypLE Express enzyme in the presence of 2-mercaptoethanol. RNA was extracted using a spin column-based RNA extraction kit (Thermo Fisher) and RNA purity was assessed by spectrophotometry coupled with agarose gel electrophoresis. Optimization of HO-1 gene silencing was achieved in reactions containing 30 or 50 nM of RNAi duplex, 7.5 µL of Lipofectamine RNAi-Max transfection reagent and 1 µg of cDNA. Negative control was non-targeting siRNA controlling for non-specific effects related to siRNA delivery (Silencer Select Negative Control No. 1 siRNA, Thermo Fisher Cat# 4390843). Positive control was siRNA targeting constitutively expressed GAPDH gene (Ambion, Austin, TX, USA), Silencer Select GADH positive control siRNA, Thermo Fisher Cat# 4390849). A fluorescence transfection control (BLOCK-iT Fluorescent Oligo, Thermo Fisher Cat# 2013) designed for lipid-mediated transfections was used as an indicator of transfection efficiency.
4. Discussion
Podocytes are terminally differentiated cells of the glomerular microvasculature and most vulnerable to injury following exposure to locally (intraglomerular) or systemically generated noxious conditions. These include cytokines and pro-oxidant radicals such as superoxide (O
2−), hydrogen peroxide (H
2O
2) and peroxynitrite (ONOO−) overproduced in inflammatory processes and also free heme released following systemic or intraglomerular hemolysis, as can occur in aggressive forms of glomerulonephritis associated with hematuria or hemoglobinuria. Although concentrations of “free” heme attained within glomeruli are unknown, in hemolytic diseases, as exemplified by hemolytic uremic syndrome, heme concentrations ranging from 20 to 50 µM have been reported [
6]. At these concentrations, heme has cytotoxic effects including activation of the alternative complement pathway in plasma and the release of C3a, C5a and soluble C5b-9 (membrane attack complex, MAC) proteins of the complement activation cascade. It also enhances cell membrane binding of C3 and C5b-9 [
7], the latter of which disrupts continuity of the cell membrane. However, heme also activates mechanisms of cellular self-defense key among which is HO-1 induction which degrades heme, thereby preventing it from rising to cytotoxic concentrations, and also converts heme into the cytoprotective breakdown products biliverdin and carbon monoxide (CO). In vivo studies demonstrated that HO-1 induction in podocytes also upregulates the complement regulatory protein, CD55, thereby reducing C3 deposition and attenuating the extent of complement-dependent glomerular injury [
4]. However, HO-1 induction in these studies was achieved using targeted overexpression of the protein in podocytes of transgenic rats [
8], and this “forced” HO-1 overexpression had long-term adverse effects on podocyte structural/functional integrity [
5].
Importantly, podocyte HO-1 induction by its physiologic inducer, heme, is limited or absent. This was shown both in systemic hemolysis [
9] and in clinical and experimental forms of glomerular injury [
10,
11] in which HO-1 mRNA but not HO-1 protein was detectable within podocytes. This raises the question of whether constitutively present or heme-induced HO-1 maintains basal podocyte CD55 expression. The present study presents preliminary experiments addressing these questions using cultured primary rat podocytes.
The heme concentrations chosen (0, 10, 50 µM) are relevant to those found in circulation in systemic hemolysis [
6]. As heme (Ferriprotoporphyrin IX) is a lipophilic molecule, it intercalates in cell membranes and impairs lipid bilayers thereby destabilizing the cytoskeleton [
12]. Therefore, to assess podocyte cytotoxicity of hemin concentrations used, a sensitive LDH release assay with superior linearity that detects the loss of the cell membrane integrity (increased permeability) was employed. As shown in
Figure 1 (raw data) and
Figure 2, hemin concentrations up to 10 µM in 18 h incubations did not cause increased LDH release or changes in podocyte morphology.
We next assessed constitutive expression of HO-1 and CD55 in cultured podocytes. As constitutive CD55 protein expression in the rat nephron is restricted to podocytes [
13], detection of this complement regulatory protein at mRNA and protein levels in cultured podocytes is expected. In contrast, of the two HO isoforms, the inducible (HO-1) is predominantly found in the liver and spleen [
14], while the constitutive (HO-2) is mainly found in the brain and testes [
15,
16]. Verification of presence of HO-1 protein in cultured podocytes and inducibility by its natural HO substrate, heme, at sub cytotoxic concentration was, therefore, necessary and was assessed by flow cytometry. As shown in
Figure 3a,b, cultured podocytes constitutively expressed both proteins. In addition, the HO-1 protein was inducible by hemin (
Figure 4a,b), which dose-dependently increased transcription of both HO-1 and CD55 (
Figure 5).
These observations indicate that heme-mediated HO-1 induction increases CD55 expression at the transcriptional (mRNA) level. To examine whether non-induced (constitutively present) HO-1 also regulates CD55 or maintains its basal expression, we performed posttranscriptional silencing of the HO-1 gene by transfecting podocytes incubated in the absence of heme (hemin) with HO-1 interfering (HO-1 RNAi). A lipofectamine-based cationic lipid formulation (see methods) specifically designed for delivery of small interfering (si) and micro (mi) RNAs into various cell types with high gene knockdown efficiencies was used. As shown in
Figure 6a, transfection with HO-1 siRNA duplexes at a concentration of 30 nM reduced HO-1 mRNA transcripts, while transfection with 50 abolished those transcripts. However, transfections with these concentrations of HO-1 siRNA duplexes had an inconsistent effect on constitutive CD55 mRNA levels (
Figure 6b). The extent of HO-1 gene silencing was apparently sufficient to markedly reduce the HO-1 protein as well (
Figure 8A) without an effect on CD55 mRNA (
Figure 8B).
These observations indicate that constitutively expressed HO-1 in cultured podocytes does not maintain basal DAF and contrast with previous reports, showing that in HO-1 knock out rats, constitutive CD55 expression assessed in whole isolated rat glomeruli was decreased [
4]. However, in whole glomeruli, cells other than podocytes, i.e., endothelial mesangial and resident macrophages, can contribute to the “cumulative” basal CD55 expression and, because HO-1 depletion in HO-1 knock-out rats is global, it occurs in all glomerular cell types. Finally, the extent to which HO-1 regulates DAF may vary depending on glomerular cell type. Thus, a direct comparison between results obtained in whole isolated glomeruli and cultured podocytes cannot be made.
Previous studies demonstrated that constitutive DAF expression is regulated by the transcription factor Sp1 [
17]. Moreover, adenovirus-mediated HO-1 transduction causes p38-dependent activation (phosphorylation) of Sp1 and that the heme degradation product, CO, mimics this effect both in vitro and in vivo [
18]. These studies point to a mechanism whereby heme-derived CO regulates constitutive DAF expression via Sp1. However, HO-1 levels achieved by adenoviral transduction in these studies were much higher than those of constitutively expressed HO-1 in present studies. Therefore, CO production could be of insufficient magnitude to activate Sp1 and upregulate basal CD55 expression.
In summary, the present study presents preliminary observations indicating that in cultured rat podocytes there is constitutive HO-1 and CD55 expression that can be increased by non-toxic heme concentrations. Constitutive HO-1 gene expression can be efficiently silenced without a significant effect on basal CD55 expression in the absence of heme exposure. The regulatory effect of HO-1 on CD55 under conditions of podocyte exposure to heme remains to be examined as it is relevant to conditions of systemic or intraglomerular hemolysis in which free heme can activate the complement cascade. Our working hypothesis is illustrated in the cartoon shown in
Figure 9.