1. Introduction
The conductivity and permittivity values of different tissue types are of great importance in a variety of medical applications. In magnetic-resonance (MR) safety [
1] and hyperthermia-treatment planning [
2], for example, conductivity tissue profiles are required to determine the specific absorption rate (SAR). Conductivity may also serve as a biomarker in oncology or in acute-stroke imaging [
3]. Permittivity is important since it affects the spatial distribution of the transmitted electromagnetic field responsible for spin excitation.
Typically, tissue conductivity and permittivity values are measured ex vivo for a particular range of frequencies [
4]. Other methods require elaborate hardware, such as electrical impedance tomography (EIT) [
5] or microwave-imaging methods [
6]. The objective of electrical-property tomography (EPT) is to retrieve these dielectric tissue values in vivo using an MR scanner and standard measurement protocols [
3,
7]. Specifically, with an MR scanner, the so-called
-field, defined as
, can be measured at a particular frequency of an operation called the Larmor frequency. This frequency is proportional to the magnitude of static background field
via relation
f =
γB0, where
γ is the proton gyromagnetic ratio divided by
, leading to MR operating frequencies of 128 and 298 MHz for a 3 and 7 T scanner, respectively.
Reconstruction of dielectric tissue parameters is based on the measured
-field, and what sets EPT apart from other more common inversion and imaging problems is that the measured
-field has its support inside the reconstruction domain. The EPT reconstruction problem therefore belongs to the class of so-called hybrid inverse problems [
8], and several EPT techniques have been proposed to reconstruct the conductivity and permittivity profiles based on these internal
data. Loosely speaking, these techniques can be divided into local differential-based approaches (see, e.g., References [
9,
10,
11,
12]) and global integral-based approaches (see e.g., References [
13,
14,
15,
16,
17,
18]). Combinations of local and global methods have been developed as well [
19,
20].
In this paper, we focus on a global integral-based EPT reconstruction method called contrast source inversion (CSI)–EPT, where a CSI approach [
21,
22,
23] is taken to solve an EPT reconstruction problem. In particular, in CSI–EPT, the reconstruction problem is formulated as an optimization problem in which an objective function is iteratively minimized. This objective function consists of a term that measures the mismatch between modeled and measured data (data mismatch), and a term that measures the discrepancy in satisfying Maxwell’s equations within the reconstruction domain using a global integral field representation (consistency mismatch). Including the second consistency term in the objective function is crucial to the performance of CSI, as shown in Reference [
24].
Minimization of the objective function is carried out by iteratively updating a contrast function, which describes the dielectric constitution of the body part of interest, and a so-called contrast source, which is the product of the contrast function and the electric-field strength. Updating takes place by fixing one variable and updating the other. More precisely, the contrast function is first fixed, the contrast source is updated, and subsequently the contrast source is fixed and the contrast function is updated.
The CSI–EPT method was originally introduced in Reference [
14], where it was shown that CSI–EPT is able to reconstruct strongly inhomogeneous conductivity and permittivity profiles within the center slice of an object placed in the center of a body coil in a 3 T MR scanner. The method was initially implemented for E-polarized electromagnetic fields in two-dimensional (2D) configurations in which the electrical field is parallel to the bore axis (
z-axis) and the magnetic field is purely transverse, because it is significantly less complex than full three-dimensional implementation. The use of a 2D approach was justified since it was shown that the electromagnetic field in the midplane of a birdcage coil essentially has an E-polarized field structure [
25]. An efficient alternative to CSI–EPT, first-order induced-current EPT or foIC-EPT, was presented in Reference [
20] as well. This method exploits the structure of the two-dimensional E-polarized field to efficiently reconstruct the tissue profiles in the midplane of the transmit coil. The foIC-EPT method is significantly faster than CSI–EPT and produces reconstructions in real time with essentially the same quality as 2D CSI–EPT.
The CSI–EPT method has recently been extended to three-dimensional (3D) configurations in Reference [
26]. With this 3D implementation of CSI–EPT, volumetric conductivity and permittivity profiles are obtained, and it is no longer necessary to restrict the reconstruction domain to the midplane of a transmit coil. Moreover, 3D CSI–EPT is based on vectorial 3D Maxwell equations and no (E-polarized) field structure is assumed to be present as in the case of a 2D approach. Unfortunately, computation times dramatically increase compared with 2D CSI–EPT and foIC-EPT and, depending on the configuration, it may take 3D CSI–EPT hours or even days to converge even on dedicated high-performance computers or servers. Apart from possible preconditioning techniques that may be applied to accelerate the convergence of 3D CSI–EPT, 2D CSI–EPT or foIC-EPT may be preferable in practice, since reconstruction times are significantly shorter compared with 3D approaches.
In this paper, we thoroughly investigate this issue and compare reconstructions obtained with 2D CSI–EPT, foIC-EPT, and 3D CSI–EPT. Reconstruction artifacts in the conductivity and permittivity profiles, the modeled -field, and the internal electric field are carefully studied. Our analysis shows that only under very special conditions is a 2D approach justified. Even if the electromagnetic field has an E-polarized field structure in the midplane of the transmit coil, imposing a two-dimensional field structure is generally too limiting an approximation unless the body part of interest and transmit coil strictly satisfy the longitudinal invariance condition.
This paper is organized as follows. In
Section 2, the 2D and 3D CSI–EPT method is briefly reviewed, and the governing integral representations are presented. A variant of 2D CSI–EPT, foIC-EPT, is also presented, and a detailed analysis of the performance of all three reconstruction methods is presented in
Section 3 using a realistic head model from Virtual Family [
27]. A discussion with conclusions can be found in
Section 4. Finally, we note that the position vectors in 2D and 3D are denoted by
and
, respectively, and we use an
time convention.
2. Theory
As mentioned above, the CSI–EPT algorithm operates on two unknowns and is based on two fundamental equations. Specifically, the unknowns in CSI–EPT are contrast function andthe contrast source , and the fundamental equations are the data equation and object or state equation.
The contrast function describes the dielectric contrast of the body with respect to free space and is given by , where and are, respectively, the unknown relative permittivity and conductivity profiles of the body, is the permittivity of free space, and is the Larmor frequency of operation. The contrast function has bounded domain that is occupied by the body as its support, that is, the contrast function vanishes for . Finally, we note that the contrast function is dimensionless, and that its real part is determined by the permittivity profile, while its imaginary part is determined by the body’s conductivity profile.
The contrast source in CSI–EPT is defined as
, where
is the electric-field strength. Note that it is common to refer to
as a contrast source even though it is expressed in volts per meter and is actually scaled electric-field strength. The electric-field strength is obviously also unknown, since the dielectric constitution of the body is unknown. Even though this field is not of primary interest in EPT, CSI–EPT does provide electric-field reconstructions that may be used to reconstruct the local time-averaged power density that is dissipated into heat [
1].
To arrive at the two fundamental equations of CSI–EPT, we set up a scattering formalism in which we make use of the linearity of Maxwell’s equations and exploit the fact that the body occupies a bounded domain
. In particular, we first determine the electromagnetic field that is present inside an empty birdcage coil. In practice, this so-called background field is computed using electromagnetic-simulation software and we denote it by
. We note that the assumption is made here that external currents are impressed and field-independent. Consequently, antenna loading is not directly taken into account. The total electromagnetic field in presence of the body is denoted by
, and using the linearity of Maxwell’s equations this field can be written as
where
is the scattered electromagnetic field due to the presence of the body. For this field, we have the integral representations
where
and
are essentially the electric current to the electric field and electric current to magnetic field Green’s tensors of the background medium. Note that these are the Green’s tensors of a homogeneous background medium, and the presence of the coil is not taken into account. Explicit expressions for these tensors are given below.
Having these integral representations at our disposal, we can now present the basic CSI–EPT equations. We start with the equation that relates the measured
-field to the contrast source. In particular, using the integral representation for the scattered magnetic field of Equation (
2), we have
which can be written more compactly as
where linear data operator
is implicitly defined in Equation (
3). Equation (
4) is known as the data equation and relates unknown contrast source
to the scattered
-field. Note that this scattered field is known, since
and the total
-field is known through measurements, while background field
is known through simulations. The real phase is generally not known in practice, and tranceive-phase approximation is often used, which can lead to reconstruction artefacts at higher frequencies [
28].
The second basic CSI–EPT equation, called the object or state equation, is obtained from the integral representation for the scattered electric field as given by the second equation of Equation (
2). Using the definition of the scattered electric field
, this integral representation can be written as
and multiplying the above equation by contrast function
, we arrive at
which can be written more compactly as
where linear operator
is implicitly defined in Equation (
6).
To summarize, the two fundamental unknowns in CSI–EPT are contrast function
and contrast source
, and the basic CSI–EPT equations are the data Equation (
4) and the object Equation (
7).
Now, suppose we have available an approximation for the contrast function and contrast source. We denote these approximants by
and
, respectively, and, in order to measure how well these approximations satisfy the data and object equations, we introduce the data and object residuals as
and
respectively, and measure their magnitudes using
-norms
In CSI–EPT, these norms are used to define objective function
and the goal is to find a contrast function and contrast source that minimizes this objective function. We note that including the two-norm of the object residual in the objective function (second term on the right-hand side of Equation (
11)) is crucial to the success of CSI, since it has been shown that a contrast-source inversion approach without this term produces unsatisfactory results in general [
24].
In CSI–EPT, finding the desired contrast function is now realized by minimizing the objective function in a “fix-one-minimize-for-the-other” approach. The iterative process continues until a predefined maximum number of iterations or specified tolerance level of the objective function has been reached. Specifically, the basic CSI–EPT algorithm is as shown in Listing 1.
Listing 1. Contrast-source inversion–electrical-property tomography (CSI–EPT). |
|
Polak–Ribière update directions are usually taken for update direction
in Step 1 of the algorithm, but Fletcher–Reeves or Hesteness–Stiefel update directions may be used as well. To determine these update directions, the gradient of
with respect to
at
is required. Explicit expressions for this gradient and corresponding step length
can be found in Reference [
23], for example.
Note also that, with Equation (
5), the object residual can be written as
and, in Steps 2 and 3, we find minimum-norm contrast function
for which
is minimized. This contrast function is generally sensitive to small perturbations in
at locations where the magnitude of the electric field strength is “small.” To suppress this effect, we can alternatively update the contrast function at every iteration according to update formula
with
the Polak–Ribière update direction for the contrast function, and
its corresponding update coefficient. Such an approach usually has a regularizing effect and typically leads to smoother reconstructions.
2.1. Object and Data Operators in Three-Dimensional CSI–EPT
In three dimensions and with air as a background medium, the integral representations for the scattered fields, as given by Equation (
2), take on form
where
is the electromagnetic-wave speed in vacuum,
the wave number in vacuum, and
is the vector potential given by
with
the three-dimensional Green’s function of the vacuum background domain given by
Note that the nabla operators act on position vector
and not on integration variable
. Three-dimensional object operator
can easily be identified from the second part in Equation (
13). For data operator
, however, we have to substitute the
x and
y components of the scattered magnetic flux density in Equation (
3) to obtain
where
and
. From the above expression for the scattered
-field, the 3D data operator
can be identified. Note the particular structure of this operator: scattered
-field originates from a difference between the transverse variations of the longitudinal vector potential (
) and the longitudinal variations of the transverse vector potential (
).
2.2. Object and Data Operators in Two-Dimensional CSI–EPT
In various papers (see Reference [
25], for example) it has been reported that the radio-frequency (RF) field in the midplane of a birdcage coil is essentially E-polarized, meaning that the electric-field strength only has a longitudinal component (
), while magnetic -flux density only has
x and
y components (
). Additionally, in a two-dimensional configuration that is invariant in the
z direction, external electric current densities with longitudinal components only generate E-polarized fields. Identifying the currents in the rungs of the birdcage coil with these
z-directed external current sources and denoting the slice through the object that coincides with the midplane of the birdcage coil by
, it makes sense to assume that within this midplane the RF field is essentially two-dimensional and E-polarized with integral representations for the scattered fields given by
where
is the position vector in the midplane of the birdcage coil,
is the transverse nabla operator, and
is the vector potential in two dimensions (and is thus expressed as a two-dimensional integral as opposed to the three-dimensional integral in the 3D case) with
the Green’s function of the two-dimensional homogeneous background medium (air) and
is the Hankel function of the second kind and order zero. In this two-dimensional case, object operator
can easily be identified from the second part of Equation (
17) and does not contain a gradient-divergence operator as in the three-dimensional case. For 2D data operator
, we have to substitute the
x and
y components of the magnetic-flux density as given by the first part of Equation (
17) in the definition of the
-field to obtain
From this expression, 2D data operator
can now easily be identified. Comparing the two-dimensional field representation of Equation (
20) with its three-dimensional counterpart of Equation (
16), we observe that longitudinal spatial variations are absent in the two-dimensional case. Moreover, the vector potentials in both expressions are different, since this quantity is computed using Equation (
18) in the two-dimensional case, while the three-dimensional vector potential is given by Equation (
14). Differences between two- and three-dimensional CSI–EPT reconstructions are discussed further in
Section 3.
2.3. Simplified Two-Dimensional CSI–EPT—foIC-EPT
In two dimensions, the CSI–EPT algorithm can be simplified by exploiting the particular structure of E-polarized RF fields. To make this simplification explicit, we first introduce differentiation operator
and note that operators
and
essentially factor two-dimensional Laplacian
as
Now, as a first step, we substitute the second part of Equation (
17) in Equation (
20) to obtain
Subsequently, we use the definition of the scattered fields to write the above expression as
and, since
, this simplifies to
If we now act with the
operator on this equation, we obtain
and since
satisfies
with
we arrive at
This last equation shows that, in two dimensions, induced current density is obtained (accounting for multiplication by
) by acting with the
operator on the total
-field. The simplified CSI–EPT method is therefore called a first-order-induced current EPT method, since a first-order differentiation of the
-field essentially immediately results in an image of the induced current density.
As shown in Reference [
20], after the induced current density is obtained, the corresponding electric-field strength can be computed by solving a specific integral equation defined on
. With the electric-field strength now known, the conductivity and permittivity profiles within the slice can be obtained from Equation (
26). The overall first-order induced current density EPT algorithm can be summarized as presented in Listing 2.
Listing 2. First-Order Induced Current EPT Algorithm (foIC-EPT). |
|
Further details about this algorithm can be found in Reference [
20]. Finally, we note that the above algorithm is a direct noniterative EPT method and, as opposed to CSI–EPT, requires the solution of a system of equations (Step 2) to arrive at the reconstructed conductivity and permittivity profiles. Fortunately, as demonstrated in Reference [
20], this system of equations can efficiently be solved using iterative solvers such as the generalized minimal residual (GMRES) method [
29] and, typically, only a small number of iterations is required to reach a prescribed error.
4. Discussion
We investigated the performance of two- and three-dimensional CSI–EPT in reconstructing dielectric tissue profiles based on
data collected inside the reconstruction slice or domain of interest. Since these data has their support inside the reconstruction domain, EPT belongs to the class of so-called hybrid inverse problems [
8]. In CSI–EPT, reconstructing tissue parameters is posed as an optimization problem in which an internal objective function, that is, an objective function that measures both field and model discrepancies within the domain of interest, is minimized in an iterative manner. Field discrepancies are measured by considering the
-norm of the difference between modeled and measured data, while model discrepancies are measured by an
-norm that tells us how well a conductivity and permittivity tissue profile, and the corresponding contrast source, satisfy Maxwell’s equations. Including model discrepancies in the objective function is crucial to the performance of CSI–EPT, since it has been shown that, without this term, unsatisfactory reconstruction results may be obtained [
24]. In addition to the tissue profiles, CSI–EPT reconstructs electric-field strength as well, and may therefore also be used to predict the SAR that is induced inside the body or a body part of interest [
30], which is important for MR safety and hyperthermia-treatment planning, for example. Finally, we also showed that, in two dimensions, an alternative noniterative and integral-based reconstruction algorithm called foIC-EPT may be employed. This method is significantly faster than 2D and 3D CSI–EPT, and reconstructs tissue profiles and corresponding electric-field strength essentially in real time on a present-day standard laptop or PC (Intel i5-i7 or similar). However, foIC-EPT is restricted to two-dimensional configurations since it exploits two-dimensional E-polarized field structures. CSI–EPT, on the other hand, does not exploit any particular field structure and can be extended to the vectorial three-dimensional case, turning CSI–EPT into a volumetric EPT reconstruction method.
We carried out several comparisons between reconstructions obtained with 2D CSI–EPT, foIC-EPT, and 3D CSI–EPT. Our simulations show that care needs to be exercised when a 2D reconstruction approach is followed or reconstruction artefacts are obtained in the reconstructed dielectric tissue profiles. Specifically, we showed that, by using 2D methods, erroneous reconstructions could be obtained, since the longitudinal variations of the transverse vector potential are completely ignored in the data model for the field. Moreover, vector potential itself is computed differently in 2D and 3D since longitudinal invariance is assumed in the 2D case. In fact, the transverse electric field and the longitudinal magnetic field vanish in 2D as a consequence of the (assumed) invariance of the object and external sources along the longitudinal direction. In 3D, however, all components of the electromagnetic field are present and their contributions to the measured data and object equations have to be taken into account. Of course, in some situations, an E-polarized field structure may be present in the midplane of a birdcage coil, but the scattered -field is also influenced by longitudinal variations of transverse vector potential . These equations can only be simplified to 2D if we can guarantee that longitudinal invariance or the smoothness of certain field components can be imposed before any reconstruction algorithm is applied to the measured data. Therefore, cylindrical body parts, such as legs or arms, could be reliably reconstructed via 2D CSI–EPT, but this at least requires further validation through simulations and measurements using cylindrical phantom models with known dielectric characteristics.
No assumptions on the fields are imposed in 3D CSI–EPT and reconstruction errors due to such assumptions are therefore avoided. Moreover, 3D CSI–EPT is a volumetric reconstruction method, and is not restricted to a specific plane within the configuration. Reliable reconstructions can be obtained within any desired domain of interest provided that
data are available within this domain. Unfortunately, computation times significantly increase when applying 3D CSI–EPT. Depending on the number of unknowns in the EPT reconstruction problem, 3D CSI–EPT may take many iterations to converge to the desired error tolerance, with total computation times of hours or days, even on dedicated computers or servers. In future research, we focus on accelerating the convergence rate of 3D CSI–EPT by including preconditioning techniques in CSI–EPT (as described in Reference [
23], for example) that exploit all a priori knowledge we have about the object or body part that needs to be reconstructed. This knowledge can also be used to construct an accurate initial guess, thereby possibly further accelerating CSI–EPT.
In our experiments, we used simulated -field data to test the performance of 2D and 3D CSI–EPT on strongly inhomogeneous structures, and to study the differences between two- and three-dimensional CSI–EPT approaches. In real-world measurements, the data obviously differ from simulated data, and CSI–EPT should be adapted so that it can handle measured data. In this respect, we identified three practical issues that need to be addressed, which are part of our current CSI–EPT research.
First, in practice, the
-field is obtained in polar form through separate amplitude and phase measurements. In both cases, the collected data are contaminated with noise. Therefore, filtering or regularization techniques that suppress the effects of noise should be incorporated in CSI–EPT. Initial studies show that filtering of the data allows us to handle measured data in foIC-EPT [
20] and, as demonstrated in Reference [
14], total-variation (TV) regularization may suppress noise effects in CSI–EPT. However, due to the many possible choices for the regularization parameter in this method, it is presently not clear for which parameter or parameter range the TV CSI–EPT scheme is most effective.
Second, the phase that is measured in practice is not the phase of the
-field, but the so-called transceive-phase from which the
-phase can be extracted. To this end, the tranceive-phase approximation is often applied, but the validity of this approximation is not fully understood, and may lead to reconstruction errors in conductivity and permittivity profiles [
28]. Fortunately, it is shown in Reference [
31] that improved
phase approximations can be obtained from the tranceive phase by incorporating an iterative-phase correction scheme in the CSI–EPT reconstruction algorithm. This correction scheme seems to reliably retrieve
phase maps from the measured tranceive phase, and leads to improved conductivity and permittivity reconstructions compared with reconstructions that are obtained when tranceive-phase approximation is applied. We will include this phase-correction mechanism in future CSI–EPT implementations as well. Another option is to opt for phaseless approaches as, for example, proposed in References [
32,
33].
Finally, in practice, the current densities in the transmit coil that generate the incident field depend on the present object, and we must account for this loading effect as well. Specifically, integral representations for the fields in CSI–EPT are obtained using scattered-field formalism in which it is assumed that current density in the transmitting antenna is impressed and independent of the scatterer that may be present in the configuration. In practice, however, these currents do depend on the object, and, consequently, care must be taken when we compute the background field in CSI–EPT. One approach is, therefore, to simulate this loading effect using a suitable coil and body model in a commercial field solver and to extract current densities in the coil from this solver. The background field in CSI–EPT (the field without any load) can then be computed using these extracted currents. In this way, the loading effect encountered in practice can be incorporated in our CSI–EPT reconstruction algorithm.
Our final aim is, of course, to turn CSI–EPT into a practical reconstruction method to obtain accurate and reliable conductivity and permittivity tissue maps of an interior part of the human body at MR operation frequencies. Reconstruction results based on simulated data are very promising, and we think that, by addressing the practical issues discussed above, we will indeed make significant progress towards a reliable EPT reconstruction method that provides us with accurate dielectric tissue maps in practice.