Marine-Derived Molecules with Different Bioactivities

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Natural and Bio-derived Molecules".

Deadline for manuscript submissions: closed (31 May 2023) | Viewed by 13765

Special Issue Editors


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Guest Editor
Faculty of Pharmacy, King Abdulaziz University, P.O. Box 80260, Jeddah 21589, Saudi Arabia
Interests: marine natural products; marine invertebrates and associated microbes; cyanobacteria; structural determinations; marine macrolides and toxins; compounds with actin-disruption effects; antitumors and antibiotics; marine chemical ecology
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Guest Editor
Suez Canal University Hospital, Suez Canal University, Ismailia 41522, Egypt
Interests: marine natural products; marine biodiscovery; invertebrates; cyanobacteria; marine microbes; structure determinations; marine alkaloids; antitumor and antibiotics
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

The world’s oceans have been shown to provide a rich setting with great biodiversity and chemical entities with proven bioactivities related to cancer, inflammation, epilepsy, the immunomodulatory system, microbial and parasitic infections, and many others. Currently, there are eight approved drugs of marine origin and more than 20 other compounds in different clinical phases. Marine invertebrates and micro-organisms represent the major sources of these compounds.

The advantages of studying organisms from the marine environment lie primarily in the breadth of marine biodiversity and the consequent variety of new chemical structures found among marine natural products. Attesting to the tremendous diversity of marine life is the fact that, of the 33 animal phyla, 32 are found in the sea, while only 12 occur on land. The larger genetic pool found in the marine environment has resulted in the synthesis of a wide variety of chemicals that can be exploited in a systematic screening program. Many of the primitive phyla that have evolved over the greatest time in the sea appear to have done so using survival mechanisms based on chemical synthesis. The compounds that are responsible for the successful survival of marine organisms possess significant biological activities that often interfere with the essential growth or biosynthetic mechanisms of competing organisms. These are precisely the types of chemicals that might be expected to be active in cancer-related bioassays. Over many millions of years of evolution, marine animals have evolved molecules with high binding affinities toward intracellular targets. The opportunity to apply these “evolutionarily significant molecules” within a mechanism-based drug discovery program is thus a rational approach to targeted drug discovery.

This Special Issue on marine-derived molecules with different bioactivities in Biomolecules will cover all scopes of bioassay-directed fractionation of extracts, purification, and structure mapping of marine-derived molecules, as well as their biological activities. Biomolecules from marine macro-organisms and/or microbes, the development of new assays, metabolomics, docking and dereplication of compounds will all be targeted in this issue.

As Special Issue editors, we invite all colleagues who are actively involved in research related to marine biomolecules to share their latest findings and results with other colleagues working in the same field. I hope that this Special Issue will provide deep insights into the importance of marine-derived biomolecules as a future source for drug discovery. I also hope that this Special Issue will inspire junior scientists to seek out the huge biodiversity of the marine environment and its future impact as a leading source for drug discovery and development.

Keywords:

  • Marine-derived biomolecules
  • Bioassay-guided purification of hits
  • Structure determination
  • Antimicrobial
  • Antifungal
  • Antibiotics
  • Antivirals
  • Antioxidants
  • Docking
  • Quorum sensing inhibition
  • Inhibition of microbial biofilm formation
  • Pharmaceutical application
  • Network pharmacology

Prof. Dr. Diaa Youssef
Dr. Lamiaa Shaala
Guest Editors

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Keywords

  • marine natural products
  • bioactivity
  • in vitro screening
  • in vivo studies
  • computational approaches
  • network pharmacology
  • cytotoxicity
  • anticancer effect

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Published Papers (5 papers)

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Research

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29 pages, 3802 KiB  
Article
The Impact of Viral Infection on the Chemistries of the Earth’s Most Abundant Photosynthesizes: Metabolically Talented Aquatic Cyanobacteria
by Yunpeng Wang, Scarlet Ferrinho, Helen Connaris and Rebecca J. M. Goss
Biomolecules 2023, 13(8), 1218; https://doi.org/10.3390/biom13081218 - 4 Aug 2023
Cited by 2 | Viewed by 2059
Abstract
Cyanobacteria are the most abundant photosynthesizers on earth, and as such, they play a central role in marine metabolite generation, ocean nutrient cycling, and the control of planetary oxygen generation. Cyanobacteriophage infection exerts control on all of these critical processes of the planet, [...] Read more.
Cyanobacteria are the most abundant photosynthesizers on earth, and as such, they play a central role in marine metabolite generation, ocean nutrient cycling, and the control of planetary oxygen generation. Cyanobacteriophage infection exerts control on all of these critical processes of the planet, with the phage-ported homologs of genes linked to photosynthesis, catabolism, and secondary metabolism (marine metabolite generation). Here, we analyze the 153 fully sequenced cyanophages from the National Center for Biotechnology Information (NCBI) database and the 45 auxiliary metabolic genes (AMGs) that they deliver into their hosts. Most of these AMGs are homologs of those found within cyanobacteria and play a key role in cyanobacterial metabolism-encoding proteins involved in photosynthesis, central carbon metabolism, phosphate metabolism, methylation, and cellular regulation. A greater understanding of cyanobacteriophage infection will pave the way to a better understanding of carbon fixation and nutrient cycling, as well as provide new tools for synthetic biology and alternative approaches for the use of cyanobacteria in biotechnology and sustainable manufacturing. Full article
(This article belongs to the Special Issue Marine-Derived Molecules with Different Bioactivities)
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20 pages, 1465 KiB  
Article
Exploration of Bis-Cinnamido-Polyamines as Intrinsic Antimicrobial Agents and Antibiotic Enhancers
by Melissa M. Cadelis, Jisoo Kim, Florent Rouvier, Evangelene S. Gill, Kyle Fraser, Marie-Lise Bourguet-Kondracki, Jean Michel Brunel and Brent R. Copp
Biomolecules 2023, 13(7), 1087; https://doi.org/10.3390/biom13071087 - 7 Jul 2023
Viewed by 1264
Abstract
The marine natural product ianthelliformisamine C is a bis-cinnamido substituted spermine derivative that exhibits intrinsic antimicrobial properties and can enhance the action of doxycycline towards the Gram-negative bacterium Pseudomonas aeruginosa. As part of a study to explore the structure–activity requirements of these [...] Read more.
The marine natural product ianthelliformisamine C is a bis-cinnamido substituted spermine derivative that exhibits intrinsic antimicrobial properties and can enhance the action of doxycycline towards the Gram-negative bacterium Pseudomonas aeruginosa. As part of a study to explore the structure–activity requirements of these activities, we have synthesized a set of analogues that vary in the presence/absence of methoxyl group and bromine atoms and in the polyamine chain length. Intrinsic antimicrobial activity towards Staphylococcus aureus, methicillin-resistant S. aureus (MRSA) and the fungus Cryptococcus neoformans was observed for only the longest polyamine chain examples of non-brominated analogues while all examples bearing either one or two bromine atoms were active. Weak to no activity was typically observed towards Gram-negative bacteria, with exceptions being the longest polyamine chain examples 13f, 14f and 16f against Escherichia coli (MIC 1.56, 7.2 and 5.3 µM, respectively). Many of these longer polyamine-chain analogues also exhibited cytotoxic and/or red blood cell hemolytic properties, diminishing their potential as antimicrobial lead compounds. Two of the non-toxic, non-halogenated analogues, 13b and 13d, exhibited a strong ability to enhance the action of doxycycline against P. aeruginosa, with >64-fold and >32-fold enhancement, respectively. These results suggest that any future efforts to optimize the antibiotic-enhancing properties of cinnamido-polyamines should explore a wider range of aromatic ring substituents that do not include bromine or methoxyl groups. Full article
(This article belongs to the Special Issue Marine-Derived Molecules with Different Bioactivities)
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15 pages, 1294 KiB  
Article
Revealing Natural Intracellular Peptides in Gills of Seahorse Hippocampus reidi
by Claudia Neves Correa, Louise Oliveira Fiametti, Gabriel Marques de Barros and Leandro Mantovani de Castro
Biomolecules 2023, 13(3), 433; https://doi.org/10.3390/biom13030433 - 24 Feb 2023
Cited by 1 | Viewed by 2181
Abstract
The seahorse is a marine teleost fish member of the Syngnathidae family that displays a complex variety of morphological and reproductive behavior innovations and has been recognized for its medicinal importance. In the Brazilian ichthyofauna, the seahorse Hippocampus reidi is among the three [...] Read more.
The seahorse is a marine teleost fish member of the Syngnathidae family that displays a complex variety of morphological and reproductive behavior innovations and has been recognized for its medicinal importance. In the Brazilian ichthyofauna, the seahorse Hippocampus reidi is among the three fish species most used by the population in traditional medicine. In this study, a protocol was performed based on fast heat inactivation of proteases plus liquid chromatography coupled to mass spectrometry to identify native peptides in gills of seahorse H. reidi. The MS/MS spectra obtained from gills allowed the identification of 1080 peptides, of which 1013 peptides were present in all samples and 67 peptide sequences were identified in an additional LC-MS/MS run from an alkylated and reduced pool of samples. The majority of peptides were fragments of the internal region of the amino acid sequence of the precursor proteins (67%), and N- and C-terminal represented 18% and 15%, respectively. Many peptide sequences presented ribosomal proteins, histones and hemoglobin as precursor proteins. In addition, peptide fragments from moronecidin-like protein, described with antimicrobial activity, were found in all gill samples of H. reidi. The identified sequences may reveal new bioactive peptides. Full article
(This article belongs to the Special Issue Marine-Derived Molecules with Different Bioactivities)
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14 pages, 2732 KiB  
Article
Development of a Fermented Beverage with Chlorella vulgaris Powder on Soybean-Based Fermented Beverage
by Norbert-Istvan Csatlos, Elemer Simon, Bernadette-Emőke Teleky, Katalin Szabo, Zorița Maria Diaconeasa, Dan-Cristian Vodnar, Călina Ciont (Nagy) and Oana-Lelia Pop
Biomolecules 2023, 13(2), 245; https://doi.org/10.3390/biom13020245 - 27 Jan 2023
Cited by 13 | Viewed by 3992
Abstract
The area of functional beverages made from plant-based or non-dairy milk is one of the fastest-growing sectors in the world. The microalgae Chlorella vulgaris is a source of functional ingredients, with a large spectrum of healthy compounds, such as canthaxanthins, astaxanthins, peptides, and [...] Read more.
The area of functional beverages made from plant-based or non-dairy milk is one of the fastest-growing sectors in the world. The microalgae Chlorella vulgaris is a source of functional ingredients, with a large spectrum of healthy compounds, such as canthaxanthins, astaxanthins, peptides, and oleic acid. The study aimed to investigate the suitability of C. vulgaris biomass as a substrate for Lactobacillus fermentum and Lactobacillus rhamnosus development and fermentation in vegetal soy beverages and to evaluate the fermented product in terms of bacterial viability, antioxidant capacity, and in vitro bio-accessibility. During fermentation, a bacterial concentration of 8.74 log10 CFU/mL was found in the soy beverage with C. vulgaris and L. rhamnosus, and 8.71 log10 CFU/mL in beverage with C. vulgaris and L. fermentum. Polyphenol content and dietary antioxidant capacity significantly improved after fermentation soy drinks. On the other hand, through the digestibility of the beverages, the bacterial viability significantly decreased. To comprehend the components responsible for the efficient delivery of bacteria across the gastrointestinal tract, further investigation is required on probiotic encapsulation methods. Full article
(This article belongs to the Special Issue Marine-Derived Molecules with Different Bioactivities)
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16 pages, 4497 KiB  
Review
Metabolites and Bioactivity of the Marine Xestospongia Sponges (Porifera, Demospongiae, Haplosclerida) of Southeast Asian Waters
by Fikri Akmal Khodzori, Nurzafirah Binti Mazlan, Wei Sheng Chong, Kuan Hung Ong, Kishneth Palaniveloo and Muhammad Dawood Shah
Biomolecules 2023, 13(3), 484; https://doi.org/10.3390/biom13030484 - 6 Mar 2023
Cited by 6 | Viewed by 3146
Abstract
Sponges are aquatic, spineless organisms that belong to the phylum Porifera. They come in three primary classes: Hexactinellidae, Demospongiae, and Calcarea. The Demospongiae class is the most dominant, making up over 90% of sponge species. One of the most widely studied genera within [...] Read more.
Sponges are aquatic, spineless organisms that belong to the phylum Porifera. They come in three primary classes: Hexactinellidae, Demospongiae, and Calcarea. The Demospongiae class is the most dominant, making up over 90% of sponge species. One of the most widely studied genera within the Demospongiae class is Xestospongia, which is found across Southeast Asian waters. This genus is of particular interest due to the production of numerous primary and secondary metabolites with a wide range of biological potentials. In the current review, the antioxidant, anticancer, anti-inflammatory, antibacterial, antiviral, antiparasitic, and cytotoxic properties of metabolites from several varieties of Southeast Asian Xestospongia spp. were discussed. A total of 40 metabolites of various natures, including alkaloids, fatty acids, steroids, and quinones, were highlighted in X. bergquistia, X. testudinaria, X. muta, X. exigua, X. ashmorica and X. vansoesti. The review aimed to display the bioactivity of Xestospongia metabolites and their potential for use in the pharmaceutical sector. Further research is needed to fully understand their bioactivities. Full article
(This article belongs to the Special Issue Marine-Derived Molecules with Different Bioactivities)
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