Biocontrol of Grapevine Diseases, 2nd Edition

A special issue of Journal of Fungi (ISSN 2309-608X). This special issue belongs to the section "Fungal Pathogenesis and Disease Control".

Deadline for manuscript submissions: closed (15 May 2024) | Viewed by 4723

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Guest Editor
IPREM, Institut des Sciences Analytiques et de Physicochimie pour l‘Environnement et les Matériaux—UMR 5254, Microbial Ecology, Université de Pau et des Pays de l’Adour/E2S UPPA—CNRS, Pau, France
Interests: grapevine trunk disease (GTD) biocontrol and microbial ecology; innovative cultural practices; biocontrol; plant-microorganism relationships
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Special Issue Information

Dear Colleagues,

Grapevine crops, which are present in many countries, are subject to a variety of pathogenic attacks. Emphasis is placed here on the pathogens that, by attacking the grapevine organs such as leaves, grapes or wood, decrease plant productivity and longevity and diminish wine quality, causing considerable economic losses to the viticulture sector. The main leaf and berry pathogens are grey mould or powdery and downy mildews. The wood pathogens are known as grapevine trunk diseases (GTDs) and their re-emergence, within the span of a mere two decades in the late 1990s, has become a subject of major concern for the viticulture sector. The main table grape- or wine-producing regions throughout the world are being attacked by these diseases and, with the exception of GTDs, they are frequently controlled by chemical pesticides, mostly fungicides, used especially for mildews. With regard to GTDs, no curative control methods have been available in Europe since the ban of sodium arsenite in the early 2000s, and experiments on fungicides have not produced any satisfactory curative or preventive products to control GTDs worldwide. As a consequence, biological control, based on microorganisms or natural products, are currently on the surge to find a suitable solution against grapevine diseases.

In this Special Issue, a special focus will be placed on potential microbial biocontrol agents (BCAs) that are mostly indigenous colonisers of grapevine organs (e.g., roots, leaves, grapes, wood tissues). In order to improve and ensureBCA efficacy from one year to another, the approach consists of testing BCAs in mother-vines, during the propagation process, and in the vineyards. Induction of plant resistance and/or physiological stress of pathogenic fungi is a consequence of BCA application on grapevine. New combinations of BCAs with different modes of actions can be used. Depending on the BCA, the incidence and behaviour of specific BCAs with various cultivars and their influence on the indigenous grapevine microbial communities over time could vary. This Special Issue will focus on microbial BCAs, in additon to their secondary metabolites or enzymes, or natural compounds. Special attention will be given to the combination of strategies, for instance by combining BCAs with other plant protection practices, such as cultural methods or tolerant plants.

In this Special Issue of the Journal of Fungi, entitled “Biocontrol of Grapevine Diseases”, research papers or reviews on these areas of research are welcome.

Topics include, but are not limited to, the following:

  • Native microbial strains that colonise the various organs of grapevines as a potential source of BCA to be used against grapevine diseases;
  • Deciphering the direct or indirect mode of action of BCA used to control grapevine pathogens;
  • Plant/pathogens/BCA interactions via omics approaches to study the induced resistance on grapevine and/or the physiological stress of pathogenic fungi;
  • Microbial secondary metabolites or enzymes, or natural compounds, used to control grapevine diseases;
  • Influence of BCAs on the diversity and composition of the indigenous grapevine-microbial communities over time.

Prof. Dr. Patrice Rey
Guest Editor

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Keywords

  • biocontrol agents (BCA)
  • grapevine diseases
  • microorganisms
  • natural compounds
  • combination of BCAs
  • induction of resistance
  • pathogenic fungal stress
  • native microbial communities

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Published Papers (4 papers)

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Research

20 pages, 5154 KiB  
Article
Impact of the Biocontrol Product, Esquive® WP, on the Indigenous Grapevine Wood Microbiome after a 6-Year Application Period
by Amira Yacoub, David Renault, Rana Haidar, Florian Boulisset, Patricia Letousey, Rémy Guyoneaud, Eleonore Attard and Patrice Rey
J. Fungi 2024, 10(8), 566; https://doi.org/10.3390/jof10080566 - 11 Aug 2024
Viewed by 828
Abstract
Grapevine trunk diseases (GTDs) are currently limiting grapevine productivity in many vineyards worldwide. As no chemical treatments are registered to control GTDs, biocontrol agents are being tested against these diseases. Esquive® WP, based on the fungus Trichoderma atroviride I-1237 strain, is [...] Read more.
Grapevine trunk diseases (GTDs) are currently limiting grapevine productivity in many vineyards worldwide. As no chemical treatments are registered to control GTDs, biocontrol agents are being tested against these diseases. Esquive® WP, based on the fungus Trichoderma atroviride I-1237 strain, is the first biocontrol product registered in France to control GTDs. In this study, we determine whether, following grapevine pruning wound treatments with Esquive® WP, changes occurred or not in the indigenous microbial communities that are colonizing grapevine wood. Over a 6-year period, Esquive® WP was applied annually to pruning wounds on three grapevine cultivars located in three different regions. Wood samples were collected at 2 and 10 months after the Esquive® WP treatments. Based on MiSeq high-throughput sequencing analyses, the results showed that specific microbial communities were linked to each ‘region/cultivar’ pairing. In certain cases, a significant modification of alpha diversity indexes and the relative abundance of some microbial taxa were observed between treated and non-treated grapevines 2 months after Esquive® WP treatment. However, these modifications disappeared over time, i.e., 10 months post-treatment. This result clearly showed that Esquive® WP pruning wood treatment did not induce significant changes in the grapevine wood’s microbiome, even after 6 years of recurrent applications on the plants. Full article
(This article belongs to the Special Issue Biocontrol of Grapevine Diseases, 2nd Edition)
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25 pages, 4039 KiB  
Article
Broad-Spectrum Efficacy and Modes of Action of Two Bacillus Strains against Grapevine Black Rot and Downy Mildew
by Robin Raveau, Chloé Ilbert, Marie-Claire Héloir, Karine Palavioux, Anthony Pébarthé-Courrouilh, Tania Marzari, Solène Durand, Josep Valls-Fonayet, Stéphanie Cluzet, Marielle Adrian and Marc Fermaud
J. Fungi 2024, 10(7), 471; https://doi.org/10.3390/jof10070471 - 9 Jul 2024
Viewed by 1164
Abstract
Black rot (Guignardia bidwellii) and downy mildew (Plasmopara viticola) are two major grapevine diseases against which the development of efficient biocontrol solutions is required in a context of sustainable viticulture. This study aimed at evaluating and comparing the efficacy [...] Read more.
Black rot (Guignardia bidwellii) and downy mildew (Plasmopara viticola) are two major grapevine diseases against which the development of efficient biocontrol solutions is required in a context of sustainable viticulture. This study aimed at evaluating and comparing the efficacy and modes of action of bacterial culture supernatants from Bacillus velezensis Buz14 and B. ginsengihumi S38. Both biocontrol agents (BCA) were previously demonstrated as highly effective against Botrytis cinerea in grapevines. In semi-controlled conditions, both supernatants provided significant protection against black rot and downy mildew. They exhibited antibiosis against the pathogens by significantly decreasing G. bidwellii mycelial growth, but also the release and motility of P. viticola zoospores. They also significantly induced grapevine defences, as stilbene production. The LB medium, used for the bacterial cultures, also showed partial effects against both pathogens and induced plant defences. This is discussed in terms of choice of experimental controls when studying the biological activity of BCA supernatants. Thus, we identified two bacterial culture supernatants as new potential biocontrol products exhibiting multi-spectrum antagonist activity against different grapevine key pathogens and having a dual mode of action. Full article
(This article belongs to the Special Issue Biocontrol of Grapevine Diseases, 2nd Edition)
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14 pages, 8647 KiB  
Article
Genome Analysis of Pseudomonas viciae G166 Conferring Antifungal Activity in Grapevine
by Xiaoshu Jing, Ling Su, Xiangtian Yin, Yingchun Chen, Xueqiang Guan, Dongyue Yang and Yuxia Sun
J. Fungi 2024, 10(6), 398; https://doi.org/10.3390/jof10060398 - 31 May 2024
Cited by 1 | Viewed by 972
Abstract
Grapevine (Vitis vinifera) is one of the major economic fruit crops but suffers many diseases, causing damage to the quality of grapes. Strain G166 was isolated from the rhizosphere of grapevine and was found to exhibited broad-spectrum antagonistic activities against fungal [...] Read more.
Grapevine (Vitis vinifera) is one of the major economic fruit crops but suffers many diseases, causing damage to the quality of grapes. Strain G166 was isolated from the rhizosphere of grapevine and was found to exhibited broad-spectrum antagonistic activities against fungal pathogens on grapes in vitro, such as Coniella diplodiella, Botrytis cinerea, and Colletotrichum gloeosporioides. Whole-genome sequencing revealed that G166 contained a 6,613,582 bp circular chromosome with 5749 predicted coding DNA sequences and an average GC content of 60.57%. TYGS analysis revealed that G166 belongs to Pseudomonas viciae. Phenotype analysis indicated that P. viciae G166 remarkably reduced the severity of grape white rot disease in the grapevine. After inoculation with C. diplodiella, more H2O2 and MDA accumulated in the leaves and resulted in decreases in the Pn and chlorophyll content. Conversely, G166-treated grapevine displayed less oxidative damage with lower H2O2 levels and MDA contents under the pathogen treatments. Subsequently, G166-treated grapevine could sustain a normal Pn and chlorophyll content. Moreover, the application of P. viciae G166 inhibited the growth of mycelia on detached leaves and berries, while more disease symptoms occurred in non-bacterized leaves and berries. Therefore, P. viciae G166 served as a powerful bioagent against grape white rot disease. Using antiSMASH prediction and genome comparisons, a relationship between non-ribosomal peptide synthase clusters and antifungal activity was found in the genome of P. viciae G166. Taken together, P. viciae G166 shows promising antifungal potential to improve fruit quality and yield in ecological agriculture. Full article
(This article belongs to the Special Issue Biocontrol of Grapevine Diseases, 2nd Edition)
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15 pages, 3379 KiB  
Article
Transcriptional Analysis Revealing the Improvement of ε-Poly-L-lysine Production from Intracellular ROS Elevation after Botrytis cinerea Induction
by Chen Zhang, Zhanyang Zhang, Ya Cheng, Ni Ni, Siyu Tong, Wangbao Da, Chunyan Liu, Qiran Diao, Ziyan Chen, Bingyue Xin, Huawei Zeng, Xin Zeng and Dayong Xu
J. Fungi 2024, 10(5), 324; https://doi.org/10.3390/jof10050324 - 29 Apr 2024
Viewed by 1306
Abstract
Gray mold, caused by Botrytis cinerea, poses significant threats to various crops, while it can be remarkably inhibited by ε-poly-L-lysine (ε-PL). A previous study found that B. cinerea extracts could stimulate the ε-PL biosynthesis of Streptomyces albulus, while it is unclear [...] Read more.
Gray mold, caused by Botrytis cinerea, poses significant threats to various crops, while it can be remarkably inhibited by ε-poly-L-lysine (ε-PL). A previous study found that B. cinerea extracts could stimulate the ε-PL biosynthesis of Streptomyces albulus, while it is unclear whether the impact of the B. cinerea signal on ε-PL biosynthesis is direct or indirect. This study evaluated the role of elevated reactive oxygen species (ROS) in efficient ε-PL biosynthesis after B. cinerea induction, and its underlying mechanism was disclosed with a transcriptome analysis. The microbial call from B. cinerea could arouse ROS elevation in cells, which fall in a proper level that positively influenced the ε-PL biosynthesis. A systematic transcriptional analysis revealed that this proper dose of intracellular ROS could induce a global transcriptional promotion on key pathways in ε-PL biosynthesis, including the embden-meyerhof-parnas pathway, the pentose phosphate pathway, the tricarboxylic acid cycle, the diaminopimelic acid pathway, ε-PL accumulation, cell respiration, and energy synthesis, in which sigma factor HrdD and the transcriptional regulators of TcrA, TetR, FurA, and MerR might be involved. In addition, the intracellular ROS elevation also resulted in a global modification of secondary metabolite biosynthesis, highlighting the secondary signaling role of intracellular ROS in ε-PL production. This work disclosed the transcriptional mechanism of efficient ε-PL production that resulted from an intracellular ROS elevation after B. cinerea elicitors’ induction, which was of great significance in industrial ε-PL production as well as the biocontrol of gray mold disease. Full article
(This article belongs to the Special Issue Biocontrol of Grapevine Diseases, 2nd Edition)
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