2. Computational Philosophy and Methods
To better motivate our approach, we draw on a delightful article by Roald Hoffman [
20] providing a personal assessment concerning the evolution and future of computational chemistry. According to Hoffmann, computational chemistry as a discipline has grown from a devotion to increasingly accurate predictions. Hoffmann articulates the difference between understanding and prediction by arguing that a very accurate computational tool will allow the user to predict a molecule’s properties before it is made. He argues, however, that chemists truly understand the molecule only if they are able to qualitatively predict the outcome of the computation before it is performed. Hoffmann asserts that a computational tool with perfect predictability lacks chemical intuition (understanding); it merely simulates experiments. True understanding is characterized by the ability to rationalize trends.
In this volume we celebrate Linus Pauling’s innumerable contributions to chemistry. As an extremely abbreviated list, consider the concepts that he formulated as a means of fueling chemical intuition: atomic size [
21], on which his theory of ionic structure is based [
22]; and Pauling electronegativity [
23], which among other things allows us to predict substituent effects. Pauling was able to determine an atom’s size by examining lattice constant trends and electronegativity by studying the trends associated with heats of formation. Neither of these parameters is well defined; however, these are exactly the concepts that have proved essential to the qualitative thinking that Hoffmann sees as essential. Hoffmann wonders whether investigations intended to promote qualitative thinking of this kind can survive in an era when exceedingly accurate calculations are possible.
Here, we will take a lesson from Pauling and Hoffmann and analyze the changes to the electron distribution across one row of the transition metal series. Though modern tools provide the capability to analyze these changes in great detail, we will be concerned only with trends. That is, we will be less involved with the absolute magnitude of the changes and more interested in their direction.
Our analysis has three parts. First, we catalogue the electron density topology, that is, the locations of the electron density’s maxima, minima, and saddle points—its critical points (CPs)—for each of the 22 nonmagnetic transition metals in groups 3 through 11 of the periodic table. Next, we investigate how the charge density geometry evolves across the 4d transition metal series. In this step, we are interested in determining whether, for example, a charge density minimum becomes deeper or shallower across the series. Finally, we rationalize these observed geometric trends in terms of calculated changes to the kinetic energy distribution, which, in turn, we argue may be understood to arise from fundamental qualitative chemical concepts.
Toward this end, we use several electronic structure methods including the commercial codes BAND [
24,
25] and VASP [
26,
27], as well as an older in-house research code employing a linearized augmented Slater-type orbital basis set (LASTO) [
28]. Using multiple tools is our way of confirming that our results are not model dependent.
Over some thirty years investigating metallic electron density topology, our group has found that transition metal topology is a robust property, insensitive to variations in lattice constant up to about 10%, code type (e.g., VASP, BAND, or LASTO), k-point mesh, basis set size beyond some reasonable value, and choice of density functional. Thus, here we draw all these calculations together into what we believe is the first comprehensive catalogue of electron density topologies for the nonmagnetic transition metals.
While topology is insensitive to computational parameters, electron density geometry is not. The magnitude of the density at a CP can vary by 5% or more from method to method, different basis sets, or altering the density functional. However, trends persist. Accordingly, we began our calculations of the charge density geometry using LASTO with the Vosko, Wilk, and Nusair local density approximation [
29] and employing the zero order regular approximation (ZORA) for relativistic effects [
30]. We chose the LASTO code for this step because it was, in part, developed to provide a convenient graphical representation for the analysis of trends. We then used relaxed densities from BAND, correcting for relativistic effects with ZORA, but using the generalized gradient approximation (GGA) Perdew, Burke, and Ernzerhof (PBE) [
31] functional to compute the magnitude of the electron density at CPs. Comparison of these values with those found with LASTO confirms that the trends in density across the series are largely model independent,
Table A1,
Appendix A.
For the final set of results, we used kinetic energy densities and electron counts calculated by BAND for the FCC 4
d series. These were partitioned using Gradient Bundle Analysis (GBA) [
32] into meaningful volumes over which the kinetic energy and electron count is well defined. GBA was performed using the novel and newly developed in-house Bondalyzer add-ons to the Tecplot [
33] modeling suite. Each atomic basin employed 20,000 gradient bundles per atom, and no adaptive mesh subdivision.
4. Discussion
We begin our search for these energetic origins by noting that the electron density of an atomic system can be written as a sum over a possibly infinite set Kohn–Sham orbitals,
, employing any functional for exchange and correlation, a set that will be referred to here as molecular orbitals, MOs. Then,
where
is the occupation of orbital
i and
is obviously the contribution to the electron density from MO
i. As has been shown elsewhere [
45], the kinetic energy (
T) of the system at a point
x can then be expressed as
where
and
The first term of Equation (
2) indicates that there is a contribution to the kinetic energy at a point from the Laplacian of the electron density (its total curvature) at this point. The second term arises through the gradient of the MOs from which the electron density is comprised. Orbitals that are more rapidly varying will contribute more to the kinetic energy, which indicates that anti-bonding orbitals will increase
and contribute the greatest increase near interatomic nodes where
varies most rapidly.
Equation (
2) is independent of the virial theorem, which, for an atomic system where no forces are acting, requires twice the average kinetic energy (
) to equal minus the average potential energy (
), i.e.,
from which it follows:
leading to the seemingly contradictory conclusion that a system with the larger average kinetic energy will be more stable.
Of note, the virial theorem is not necessarily valid for arbitrarily partitioned subsystems. That is, over individual regions of an arbitrarily partitioned atomic system, the virial theorem need not hold. However, over a class of objects called gradient bundles [
46,
47] of which nuclear CP centered Wigner–Seitz cells, and cage CP centered electronic basins belong, the virial theorem is strictly obeyed [
5]. In addition, the integral of
vanishes over these volumes [
5], indicating that the average kinetic energy of a gradient bundle is entirely determined by
.
Accordingly, we exploit this fact using our new and unique software [
32,
48] that allows us to compute and partition the energy of, among other things, chemical bonds and electronic basins. For these calculations, we omitted contributions to kinetic energy due to correlation,
[
49]. In metals,
was found to be between 0.02 and 0.002% of the total kinetic energy, far smaller than the error introduced from numerical integration, and having no effect on presented trends.
Thus, we can determine how the energy of the FCC structures shown in
Figure 5 is distributed between tetrahedral and octahedral electronic basins, where the energy of the Wigner–Seitz cell is given by summing two tetrahedral hole energies with one octahedral hole energy. This distribution is depicted in
Figure 7 for the second row transition metals Mo through Ag. Calculating this distribution for the metals Y, Zr, and Nb was complicated by the flatness of the charged density around high symmetry points P, leading to difficulties determining the topological boundaries of the tetrahedral hole from grid-based data. Nonetheless, these cages are quite small, with significant deviation from the ideal. Their energies must then be small compared to the much larger and expanded octahedral cages.
Regardless, the figure reveals how the kinetic energy and hence total energy is partitioned within the FCC Wigner–Seitz cell for both transition metals that are unstable and stable in this structure. As we move from Mo to Ru, unstable as FCC, the tetrahedral hole preferentially gathers kinetic energy (lowering total energy), while the difference between energy of the octahedral and tetrahedral cages decreases, reaching a minimum at Ru. For the stable FCC structures beyond Ru—Rh, Pd and Ag—it is the octahedral hole that preferentially gathers kinetic energy achieving its maximum value at Ag, while the kinetic energy of the tetrahedral hole achieves its global maximum value at Rh.
We recognize a neutral metallic crystal as being comprised of a number of electron–proton pairs,
. For example, we can designate Rh as having an
of 45. Thus, we may define a quantity,
, which is loosely related to the chemical potential of an electronic basin through the addition of an electron–proton pair i.e., the change in energy of a basin as one steps across a row of the periodic table and approximated by the slope of the connecting segments in
Figure 7. We see that, for the stable FCC structures
, where the subscripts
o and
t denote the octahedral and tetrahedral electronic basins, receptively, while for those structures that are unstable as FCC, the situation is reversed and
. We note at Rh, where the value of the tetrahedral kinetic energy achieves its maximum value, our simple definition of
breaks down, as one should properly consider the slopes of the connecting segments both adding and removing an electron. Ideally, one would like to write
M as a continuous function.
Setting aside the complications at Rh (As shown in
Table A3, at Rh, we also see an anomalous expansion of the atomic 4
d and 5
s valence shell). for the moment, we would expect that, for a chemical-potential-like quantity, electrons would preferentially accumulate in the basin with the larger magnitude of
M. Inspection of
Figure 8 indeed shows that, for elements to the left of Rh, where
, density is gathered by the tetrahedral hole, while to the right of Rh, where
, density accumulates in the octahedral hole.
In this context, recall that crystallographic tetrahedral holes are locations where electron density is either accumulated or depleted. As has been demonstrated from the topologies, proceeding from left to right across the transition metal series, the electron density in regions of tetrahedral coordination varies dramatically, from regions of electron density accumulation (pseudo-atoms) to ones of electron density depletion (cage CPs). Simply, the electron density of the tetrahedral coordinations appears to be indicative of preferred structure.
Let us appeal once more to our chemical intuition, and attempt to motivate this discussion with a one-electron model. We can imagine constructing one-electron trial variational functions by considering the BCC, FCC, and HCP crystallographic structures as constructed from (not necessarily regular) four-atom tetrahedral units. The self-consistent wave functions will then be formed from a linear combination (Block states) of tetrahedral fragment orbitals (FOs) that are in turn derived from atomic-like orbitals centered on tetrahedral vertices. Since, in the solid state, there is approximately one
s-electron per transition metal (In actuality, the number of s-electrons is basis set and method dependent, but could vary by as much as 10%. The exact value could also effect kinetic energy by the same magnitude, and should be considered as a possible source of error for data presented in
Figure 7), the electron density variations across the TM series result primarily from varying occupation of twenty tetrahedral FOs built from
d-atomic orbitals, each of which can be written as the product of an angular and a radial part.
These twenty FOs can be placed into four classes distinguished by their net number of bonding interactions (
Figure 9), which will correlate with their gradient contributions to the electron density. In the first class are those orbitals characterized by bonding interactions along each of the six tetrahedral edges, possessing a net bond order of six. We note that these orbitals contribute density to the center of the tetrahedron (
Figure 9, far left). In the second class are orbitals that are anti-bonding along two opposite tetrahedral edges and bonding along the remaining four, with a net bond order of two. The third class is bonding along two edges and anti-bonding along four edges (bond order -2). These two classes contribute density along some edges and some faces of the tetrahedron (
Figure 9, center). Finally, the fourth class is distinguished by orbitals that are anti-bonding along all edges (bond order -6), which has nodes along all edges and passing through all faces (
Figure 9, far right).
For all molecules and materials, the first electronic states filled are those that are most bonding while the last filled are the most anti-bonding [
50]. Hence, for the transition metals, the first states to be occupied—those at the bottom of the
d-band—will be formed from a linear combination of FOs drawn from class I; and the last occupied—those at the top of the
d-band—will be formed from a linear combination of FOs drawn from class IV. Midband states will be formed from a linear combination of class II and III FOs, with a greater contribution from class III FOs as one move up the
d-band. Quite generally—and entirely consistent with the calculated values of kinetic energy shown in
Figure 7—the gradient contributions to the kinetic energy, particularly from the tetrahedrally coordinated regions of the early transition metals, will increase across the series through group 6, smaller for the early transition metals where class I FOs dominate, but substantial for transition metals later in the series where class III and IV FOs begin to fill.
The electron distribution resulting from the filling of these we see played out by inspection of
Figure 5, as the tetrahedral hole does not appreciably form until Mo. This is a result of filling class I and II FOs, which, from
Figure 9, contributes density to the tetrahedral region. Now, we may turn our attention to the octahedral hole.
To extend our one-electron model to the octahedral hole, consider that an octahedral coordination may be formed from two tetrahedra “decorating” opposite triangular faces of an octahedron (
Figure 10). The octahedral electron density may now be thought of as arising from forty FOs, resulting from the bonding (in phase) and antibonding (out of phase) combination of our twenty tetrahedral FOs. The antibonding FOs must possess an interatomic node and hence a steep gradient normal to the nodal plane passing through the octahedral center. As these antibonding orbitals are filled, the contributions to the kinetic energy from the octahedral cage will increase. Simple bonding/antibonding arguments dictate that this filling begins at approximately the middle of the band. In addition, inspection of
Figure 7 confirms this process indeed begins with group 9 elements (e.g., Ru) and culminates with the complete filling of the
d-band.
Returning to
Figure 5 shows the octahedral cage deepening faster relative to the tetrahedral cage early in the transition metal series, again consistent with
Figure 8 and the fact that
. That is, relative to the superimposed atomic states, electron density is being shifted from the octahedral to tetrahedral hole. As we have seen, early in the transition metal series, so much density is shifted from octahedral to tetrahedral coordinations, the tetrahedral hole does not host a CCP.
By the time we encounter the
lHCP metals, we have formed both a tetrahedral and octahedral cage, as we fill states that are both predominantly antibonding across the octahedron and tetrahedron. At this point (see
Figure 5 and
Figure 8), we begin to see a slight decrease in the transfer from the tetrahedral to octahedral cage. However, we also see further effects, which we interpret as a contraction of electron density towards the nucleus. Early transition metals accumulate density near the surface of the Wigner–Seitz cell—the charge density band of Tc is everywhere above that of Mo, which is everywhere above that of Nb, etc. This is what one would expect, as one generally interprets bonding interactions as leading to expansion/polarization of density into the inter-atomic region.
In contrast, though Ag has one more electron than Pd, we see that its electron density band is everywhere below that of Pd, which is everywhere below that of Rh. We note that, across the series, these metals share the same topology, the average electron density is increasing, and the response of system is well modeled by a small number of basis functions (in this case, three Slater-Type orbitals). Based on these facts, we invoke Occam’s Razor, and speculate the observed decrease in density on the Wigner–Seitz cell may be most simply explained as a consequence of radial contraction towards the nucleus. In support of this conjecture, in the absence of a change to the radial distribution due to a bonding/antibonding transition in the middle of the series, we would expect to see a uniform contraction across the series as a result of the increasing effective nuclear charge (see
Table A3 for values to this effect in atomic densities). However, contraction of the crystalline electron density across the 4
d series only becomes apparent with the filling of predominantly antibonding states. This informed speculation regarding the contraction of density implies the average potential energy of the electrons must be decreasing [
45,
51]. The viral theorem demands there be an offsetting increase in kinetic energy, which in part, comes from filling antibonding orbitals across both the tetrahedral and octahedral cages.
To summarize, we conjecture: early in the 4d series, the dominant contributions to lowering of potential (increasing of kinetic energy) comes from charge transfer from the octahedral to the tetrahedral coordinations—yielding structures consistent with that charge transfer—eHCP and BCC. Late in the series, stability comes from contraction toward the nucleus to decrease potential and the formation of structures with high kinetic energy tetrahedral and octahedral cages—lHCP and FCC. This conjecture is fully testable and is the subject of our current research.
Up to now, our discussion has been restricted to observations which demonstrate clear differences in behavior of the transition metals early and late in the series. However, let us push the envelope, and in the spirit of Pauling conjecture on the origins of stability for eHCP, BCC, lHCP, and FCC structures.
Consider then an FCC to BCC transformation where one state is metastable and the other is stable. Hence, we can take the total energy as
at the endpoints of the transformation. In addition, we ask, “What lowers the kinetic energy through this transition?” Such a transition will manifest through a lengthening of two opposite edges of a tetrahedron and simultaneously shortening of the remaining four edges. The contributions to
from MOs that include contributions from class II FOs that are anti-bonding along the two lengthening edges and bonding along the shortening edges (
Figure 9) will diminish through this distortion, lessening the depth of the tetrahedral cage point. If the cage is not too deep, the tetrahedral coordination will be transformed from a source to a sink for electron redistribution. Much as in the case of the
eHCP structure, charge is redistributed from the octahedral cage to the tetrahedral coordination—in this case to its ring and bond CPs. Diminished charge at the octahedral cage CP and elevated charge in the bond and ring CPs produces a more rapidly varying electron density across the BCC octahedral electron basin and hence increases its kinetic energy.
Contrast this behavior to that of an FCC metal forced BCC. Where the stable BCC topology hosts a cage CP at the octahedral center, the FCC forced BCC topology hosts a shallow bond-CP. Simple analysis will convince the reader that the charge density in this case is more rapidly varying for the stable FCC than forced BCC topology, which would be consistent with an increase in .
The factors stabilizing lHCP over FCC are more subtle than those driving the BCC structure. Still the mechanism is consistent with the overall pattern of charge transfer from octahedral to tetrahedral coordinations. Unlike the BCC structure, the magnitude of the charge redistribution is insufficient to transform the tetrahedral cage CP.
The magnitude of the charge redistribution can be inferred from
Figure 11, which show the isosurface density through the Wigner–Seitz cell. To briefly explain, the Wigner–Seitz cell was broken down into more than 20,000 voxels. The number of voxels of a given density were then plotted as a histogram, and smoothed to produce
Figure 11. These plots depict the change to the density distribution for Pd, Rh, Ru, and Tc when transformed from FCC to HCP. For consistency, we assumed an ideal
. Of particular note, the electron density distribution changes little when the normally FCC metals (Rh and Pd) are forced HCP. On the other hand, there is a substantive change in the isosurface density of the HCP metals (Tc and Ru) when there is forced FCC. Electron density that was deep in the octahedral cage is shifted to the tetrahedral cage and particularly into the rings and bond paths forming their edges and faces. The density becomes steeper in the octahedral cage particularly in the direction of the
c lattice vector. Apparently, the lower symmetry about the tetrahedral and octahedral cages of HCP compared to FCC allows the charge redistribution. In the absence of charge redistribution, the FCC structure is preferred simply because the strong electron electron repulsion is minimized by vertex sharing and hence maximizing the distance between the electron rich faces and bonds of the tetrahedral cages.
The charge rearrangement attendant with the transformations of FCC to BCC and
lHCP are consistent with those of Jahn–Teller transformations. While the exact details of these transformations can be more easily extracted from an orbital perspective (see [
52]) at the moment, other than a “not too deep tetrahedral cage”, it is not possible to pinpoint where in the electron density the incipient orbital instability lies.