Genetic Variations of TAP1 Gene Exon 3 Affects Gene Expression and Escherichia coli F18 Resistance in Piglets
Abstract
:1. Introduction
2. Results
2.1. Identification of the Escherichia coli F18-Resistant and E. coli F18-Susceptible Sutai Piglets
Tissues | Identified Groups (Number) | Difference Multiples | |
---|---|---|---|
Resistant (8) | Susceptible (8) | ||
Heart | 2.49 ± 0.94 | 1.74 ± 0.81 | 1.43 |
Liver | 5.98 ± 1.65 | 4.75 ± 1.37 | 1.25 |
Spleen | 25.86 ± 6.52 a | 13.21 ± 5.28 b | 1.96 |
Lung | 34.65 ± 8.24 a | 18.28 ± 6.64 b | 1.90 |
Kidney | 12.14 ± 2.51 | 9.19 ± 2.01 | 1.32 |
Stomach | 9.85 ± 2.32 | 7.21 ± 2.74 | 1.37 |
Muscle | 1.21 ± 0.45 | 1.00 ± 0.00 | 1.21 |
Lymph | 36.85 ± 7.55 a | 16.44 ± 4.38 b | 2.24 |
Thymus | 27.21 ± 4.21 a | 11.52 ± 3.21 b | 2.37 |
Duodenum | 28.52 ± 9.88 a | 15.48 ± 6.58 b | 1.84 |
Jejunum | 32.19 ± 4.58 a | 16.59 ± 7.05 b | 1.94 |
2.2. TAP1 Gene mRNA Expression Levels in 11 Tissues of the E. coli F18-Resistant and E. coli F18-Susceptible Sutai Piglets
2.3. Analysis of PCR-RFLP and Sequencing Results
2.4. Analysis of Gene Frequency Distribution and Hardy-Weinberg Equilibrium of the TAP1 Gene Exon 3 G729A Mutation
Sample Number | Genotype Frequency | Allele Frequency | χ2 Value | |||
---|---|---|---|---|---|---|
AA | AG | GG | A | G | ||
196 | 0.602 (118) | 0.276 (54) | 0.122 (24) | 0.740 | 0.260 | 15.851 |
2.5. Levels of TAP1 mRNA Relative Expression in Different Genotypes
Tissues | Genotype (Number) | ||
---|---|---|---|
AA (8) | AG (8) | GG (8) | |
Heart | 0.69 ± 0.09 a | 3.19 ± 1.73 b | 3.40 ± 2.01 b |
Liver | 3.21 ± 1.45 a | 7.76 ± 5.49 a | 19.38 ± 12.32 b |
Spleen | 10.91 ± 0.30 | 23.82 ± 13.68 | 65.28 ± 23.47 |
Lung | 26.77 ± 7.40 a | 25.37 ± 5.94 a | 101.39 ± 41.12 b |
Kidney | 6.75 ± 0.82 a | 11.46 ± 5.98 a | 25.81 ± 23.31 b |
Stomach | 8.27 ± 1.39 | 21.13 ± 12.29 | 51.87 ± 20.91 |
Muscle | 1.00 ± 0.00 | 1.07 ± 0.23 | 1.03 ± 0.15 |
Thymus | 17.54 ± 6.00 a | 18.74 ± 7.59 a | 61.16 ± 19.34 b |
Lymph node | 31.18 ± 21.72 a | 25.39 ± 15.01 a | 75.15 ± 21.3.8 b |
Duodenum | 43.14 ± 4.68 a | 30.22 ± 12.18 a | 59.97 ± 15.26 b |
Jejunum | 30.16 ± 0.28 a | 31.14 ± 15.51 a | 89.91 ± 15.07 b |
3. Discussion
4. Experimental Section
4.1. Experimental Materials and Sample Collection
4.1.1. Escherichia coli F18-Resistant and E. coli F18-Susceptible Sutai Pigs
4.1.2. Other Experimental Samples
4.2. Primer Design
Gene | Method | Sequence (5'–3') | Annealing Temperature | Length |
---|---|---|---|---|
TAP1 | PCR-RFLP | GAAATGTGGATAAGAGCA | 63 °C | 767 bp |
AAACAGACGGATAATGAAAGAGG | ||||
TAP1 | Real-time PCR | CCACTGCTTTTCCTTCTGCCT | 60 °C | 109 bp |
ACAGAACCTCAATGGCCACCT | ||||
GAPDH | Real-time PCR | ACATCATCCCTGCTTCTACTGG | 60 °C | 187 bp |
CTCGGACGCCTGCTTCAC |
4.3. PCR-RFLP Analysis
4.4. Total RNA Extraction and Real-Time PCR
4.5. Data Processing and Analysis
5. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Zhao, Q.; Liu, Y.; Dong, W.; Zhu, S.; Huo, Y.; Wu, S.; Bao, W. Genetic Variations of TAP1 Gene Exon 3 Affects Gene Expression and Escherichia coli F18 Resistance in Piglets. Int. J. Mol. Sci. 2014, 15, 11161-11171. https://doi.org/10.3390/ijms150611161
Zhao Q, Liu Y, Dong W, Zhu S, Huo Y, Wu S, Bao W. Genetic Variations of TAP1 Gene Exon 3 Affects Gene Expression and Escherichia coli F18 Resistance in Piglets. International Journal of Molecular Sciences. 2014; 15(6):11161-11171. https://doi.org/10.3390/ijms150611161
Chicago/Turabian StyleZhao, Qiaohui, Ying Liu, Wenhua Dong, Shiping Zhu, Yongjiu Huo, Shenglong Wu, and Wenbin Bao. 2014. "Genetic Variations of TAP1 Gene Exon 3 Affects Gene Expression and Escherichia coli F18 Resistance in Piglets" International Journal of Molecular Sciences 15, no. 6: 11161-11171. https://doi.org/10.3390/ijms150611161
APA StyleZhao, Q., Liu, Y., Dong, W., Zhu, S., Huo, Y., Wu, S., & Bao, W. (2014). Genetic Variations of TAP1 Gene Exon 3 Affects Gene Expression and Escherichia coli F18 Resistance in Piglets. International Journal of Molecular Sciences, 15(6), 11161-11171. https://doi.org/10.3390/ijms150611161