MALDI Mass Spectrometry Imaging Reveals Decreased CK5 Levels in Vulvar Squamous Cell Carcinomas Compared to the Precursor Lesion Differentiated Vulvar Intraepithelial Neoplasia
Abstract
:1. Introduction
2. Results
2.1. Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging (MALDI-MSI)
2.2. Cytokeratin 5 (CK5) Identified as a Protein of Interest
2.3. Immunohistochemistry (IHC) Analysis of CK5 across the Healthy Epithelium, Differentiated Vulvar Intraepithelial Neoplasia and Vulvar Squamous Cell Carcinoma
3. Discussion
4. Materials and Methods
4.1. Sample Cohort
4.2. MALDI-MSI Preparation and Acquisition
4.3. MALDI-MSI Data Analysis
4.4. Peptide Identification by Nanoflow Liquid Chromatography Tandem Mass Spectrometry (nano-LC-MS/MS)
4.5. Matching the MALDI-MSI Peak Groups to the Nanoflow Liquid Chromatography Tandem Mass Spectrometry (Nano-LC-MS/MS) Results
4.6. Immunohistochemistry
Supplementary Materials
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Peptide AWM [M + H] of the Peak Group 1 | Da Range of the Peak Group | No. Spectra in Peak Group 2 | Maximum Difference Median Log Intensity 3 |
---|---|---|---|
1198.71 | ±0.62 | 23,099 | 0.75 |
1028.62 | ±0.56 | 15,354 | 0.66 |
1410.72 * | ±0.82 | 18,784 | 0.58 |
1905.95 | ±0.52 | 10,956 | 0.56 |
1095.58 | ±0.82 | 21,704 | 0.55 |
944.54 | ±0.69 | 19,354 | 0.53 |
957.63 | ±0.65 | 10,464 | 0.52 |
857.60 | ±0.68 | 14,956 | 0.50 |
976.51 | ±0.65 | 15,534 | 0.49 |
878.56 | ±0.68 | 11,213 | 0.46 |
810.48 * | ±0.76 | 17,095 | 0.45 |
958.59 | ±0.69 | 15,432 | 0.42 |
943.62 | ±0.82 | 20,030 | 0.41 |
865.42 * | ±0.84 | 15,617 | 0.41 |
1217.66 | ±0.55 | 10,906 | 0.39 |
884.52 * | ±0.66 | 14,337 | 0.37 |
856.67 | ±0.74 | 15,483 | 0.36 |
1143.65 * | ±0.64 | 17,685 | 0.36 |
1045.62 | ±0.65 | 16,370 | 0.35 |
2147.19 | ±0.14 | 20,418 | 0.33 |
1105.59 | ±0.50 | 11,479 | 0.30 |
1296.68 | ±0.10 | 22,823 | 0.29 |
870.64 | ±0.85 | 22,749 | 0.29 |
842.60 | ±0.90 | 25,210 | 0.22 |
1267.65 | ±0.32 | 11,686 | 0.20 |
2932.59 | ±0.07 | 15,500 | 0.19 |
816.50 | ±0.73 | 10,983 | 0.19 |
971.56 * | ±0.65 | 15,998 | 0.18 |
1111.58 | ±0.51 | 13,473 | 0.09 |
1570.70 | ±0.17 | 12,029 | 0.05 |
864.63 | ±0.70 | 11,114 | 0.05 |
Peptide AWM [M + H] 1 | d 2 | LC-MS/MS m/z 3 | LC-MS/MS MR 4 | Peptide Score 5 | Peptide Significance 6 | Peptide Sequence 7 |
---|---|---|---|---|---|---|
810.48 | 0.45 | 405.7087 | 809.4028 | 21.44 | 0.0072 | QSSVSFR |
865.42 | 0.41 | 433.1998 | 864.3851 | 26 | 0.0025 | SGGGGGGGFGR |
884.52 | 0.37 | 442.7286 | 883.4427 | 24.74 | 0.0034 | TSFTSVSR |
971.56 | 0.18 | 486.2429 | 970.4712 | 25.1 | 0.0031 | FVSTTSSSR |
1143.65 | 0.36 | 572.3175 | 1142.6205 | 39.59 | 0.00011 | LAELEEALQK |
1410.72 | 0.58 | 705.8674 | 1409.7203 | 115.28 | 3 × 10−12 | SFSTASAITPSVSR |
1410.72 | 0.58 | 705.872 | 1409.7295 | 150.55 | 8.8 × 10−16 | TTAENEFVMLKK |
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Zhang, C.; Arentz, G.; Winderbaum, L.; Lokman, N.A.; Klingler-Hoffmann, M.; Mittal, P.; Carter, C.; Oehler, M.K.; Hoffmann, P. MALDI Mass Spectrometry Imaging Reveals Decreased CK5 Levels in Vulvar Squamous Cell Carcinomas Compared to the Precursor Lesion Differentiated Vulvar Intraepithelial Neoplasia. Int. J. Mol. Sci. 2016, 17, 1088. https://doi.org/10.3390/ijms17071088
Zhang C, Arentz G, Winderbaum L, Lokman NA, Klingler-Hoffmann M, Mittal P, Carter C, Oehler MK, Hoffmann P. MALDI Mass Spectrometry Imaging Reveals Decreased CK5 Levels in Vulvar Squamous Cell Carcinomas Compared to the Precursor Lesion Differentiated Vulvar Intraepithelial Neoplasia. International Journal of Molecular Sciences. 2016; 17(7):1088. https://doi.org/10.3390/ijms17071088
Chicago/Turabian StyleZhang, Chao, Georgia Arentz, Lyron Winderbaum, Noor A. Lokman, Manuela Klingler-Hoffmann, Parul Mittal, Christopher Carter, Martin K. Oehler, and Peter Hoffmann. 2016. "MALDI Mass Spectrometry Imaging Reveals Decreased CK5 Levels in Vulvar Squamous Cell Carcinomas Compared to the Precursor Lesion Differentiated Vulvar Intraepithelial Neoplasia" International Journal of Molecular Sciences 17, no. 7: 1088. https://doi.org/10.3390/ijms17071088
APA StyleZhang, C., Arentz, G., Winderbaum, L., Lokman, N. A., Klingler-Hoffmann, M., Mittal, P., Carter, C., Oehler, M. K., & Hoffmann, P. (2016). MALDI Mass Spectrometry Imaging Reveals Decreased CK5 Levels in Vulvar Squamous Cell Carcinomas Compared to the Precursor Lesion Differentiated Vulvar Intraepithelial Neoplasia. International Journal of Molecular Sciences, 17(7), 1088. https://doi.org/10.3390/ijms17071088