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This is an early access version, the complete PDF, HTML, and XML versions will be available soon.
Article

Analysis of CNGC Family Members in Citrus clementina (Hort. ex Tan.) by a Genome-Wide Approach

by
Yuanda Lv
1,2,3,
Shumei Liu
1,
Yanyan Ma
1,
Lina Hu
1 and
Huaxue Yan
1,2,3,*
1
Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
2
Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangzhou 510640, China
3
Guangdong Provincial Key Laboratory of Science and Technology Research on Fruit Tree, Guangzhou 510640, China
*
Author to whom correspondence should be addressed.
Int. J. Mol. Sci. 2025, 26(3), 960; https://doi.org/10.3390/ijms26030960
Submission received: 4 December 2024 / Revised: 22 January 2025 / Accepted: 22 January 2025 / Published: 23 January 2025
(This article belongs to the Section Molecular Genetics and Genomics)
Versions Notes

Abstract

The study focuses on the Cyclic nucleotide-gated ion channels (CNGCs) proteins in citrus, aiming to investigate their potential roles. A total of 33 CcCNGC proteins were identified and characterized in Citrus clementina using a genome-wide method. The study revealed that these proteins share a conserved CNGC domain structurally but exhibit significant differences in their primary sequence and motif composition. Phylogenetic analysis classified the CcCNGC proteins into 13 subgroups. The cis-elements present in all CcCNGCs promoters were identified and classified, and the number of elements was determined. The results suggested that these genes play important roles in citrus growth and development, as well as in response to biotic and abiotic stresses. Gene expression analysis further supported these findings, demonstrating that CNGC genes were responsive to various plant hormones and Phytophthora nicotianae infection, which causes citrus foot rot. Overall, the study indicated that members of the CcCNGC gene family exhibit structural and functional diversity. Further research is needed to validate the specific functions of individual family members and their roles in citrus physiology and response to stress conditions.
Keywords: CNGC; citrus; phylogenetic tree; promoter; Phytophthora nicotianae CNGC; citrus; phylogenetic tree; promoter; Phytophthora nicotianae

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MDPI and ACS Style

Lv, Y.; Liu, S.; Ma, Y.; Hu, L.; Yan, H. Analysis of CNGC Family Members in Citrus clementina (Hort. ex Tan.) by a Genome-Wide Approach. Int. J. Mol. Sci. 2025, 26, 960. https://doi.org/10.3390/ijms26030960

AMA Style

Lv Y, Liu S, Ma Y, Hu L, Yan H. Analysis of CNGC Family Members in Citrus clementina (Hort. ex Tan.) by a Genome-Wide Approach. International Journal of Molecular Sciences. 2025; 26(3):960. https://doi.org/10.3390/ijms26030960

Chicago/Turabian Style

Lv, Yuanda, Shumei Liu, Yanyan Ma, Lina Hu, and Huaxue Yan. 2025. "Analysis of CNGC Family Members in Citrus clementina (Hort. ex Tan.) by a Genome-Wide Approach" International Journal of Molecular Sciences 26, no. 3: 960. https://doi.org/10.3390/ijms26030960

APA Style

Lv, Y., Liu, S., Ma, Y., Hu, L., & Yan, H. (2025). Analysis of CNGC Family Members in Citrus clementina (Hort. ex Tan.) by a Genome-Wide Approach. International Journal of Molecular Sciences, 26(3), 960. https://doi.org/10.3390/ijms26030960

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