Multiclass Classification of Hepatic Anomalies with Dielectric Properties: From Phantom Materials to Rat Hepatic Tissues
Abstract
:1. Introduction
- Application of multiclass ML algorithms to in vivo dielectric property data: Performed by applying multiclass ML algorithms to in vivo rat dielectric properties collected from rat hepatic tissues including healthy, cirrhosis, and malignant tissues. This approach reveals the ability of the technique to discriminate different pathological stages of a diseased tissue in a realistic scenario.
- Potential proliferation of the data with phantoms: In vivo data collection is laborious, costly, requires facilities, and subject to strict ethical regulations. On the other hand, ML algorithms thrives with large amount of data. Therefore, there is a need to proliferate the data. One option is to acquire the data from phantom materials. This was performed by first, collecting dielectric property data from phantom materials mimicking the dielectric properties of liver tissues. Next, classifying the collected dielectric property data with multiclass ML algorithms. Finally, generalizing the model to in vivo dielectric property measurements.
2. Materials and Methods
2.1. In Vivo Dielectric Property Measurements
2.1.1. Experiment Samples
2.1.2. Measurement Setup
2.1.3. In Vivo Measurements
2.2. Phantom Characterization and Measurements
2.2.1. Phantom Materials
2.2.2. Measurement Setup
2.3. Uncertainty Analysis
- Repeatability: Dielectric property measurements of 0.1 M NaCl solution were collected at different sessions. To calculate uncertainty due to repeatability, standard deviation from the mean (SDM) was calculated from a total of 54 measurements.
- System drift: It was calculated by taking the difference between the dielectric property measurement after calibration and dielectric property measurement 30 min after calibration. Thirty min was chosen since during in vivo rat liver measurements, the system was re-calibrated every thirty minutes. To calculate the system drift, 30 measurements were used.
- Cable movements: It was characterized by calculating the difference between measured dielectric properties of 0.1 M NaCl solutions for different cable positions. Note that the most extreme cable movements that could occur during in vivo measurements were considered. A total of 68 measurements were used to calculate the uncertainty due to cable movements.
2.4. Multiclass Classification
2.4.1. k-Nearest Neighbors (kNN)
2.4.2. Logistic Regression (LR)
2.4.3. Random Forest (RF)
3. Results
3.1. Uncertainty Calculation with 0.1 M NaCl Solution
3.2. Dielectric Properties of Healthy and Diseased Rat Liver Tissues
3.3. Statistical Analysis
3.4. Dielectric Properties of Tissue Mimicking Materials
3.5. Multiclass Classification
4. Discussion
5. Conclusions
Funding
Conflicts of Interest
References
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Dielectric Properties | Repeatability | Difference from the Literature [19,20] | System Drift | Cable Movement | Combined Uncertainty | Expanded Uncertainty |
---|---|---|---|---|---|---|
0.37 | 0.58 | 0.53 | 0.33 | 0.93 | 1.86 | |
1.27 | 3.17 | 2.19 | 0.58 | 4.09 | 8.18 | |
0.15 | 0.36 | 0.23 | 0.10 | 0.47 | 0.94 |
Frequency (GHz) | Dielectric Properties | Malignant | Cirrhosis | Healthy |
---|---|---|---|---|
54.97 ± 6.71 | 52.95 ± 4.23 | 46.20 ± 5.79 | ||
21.89 ± 5.65 | 20.19 ± 4.51 | 17.74 ± 4.93 | ||
1.22 ± 0.49 | 1.12 ± 0.46 | 0.99 ± 0.47 | ||
51.18 ± 6.78 | 49.33 ± 4.30 | 42.15 ± 5.49 | ||
14.06 ± 4.39 | 13.80 ± 4.29 | 12.29 ± 4.50 | ||
2.35 ± 0.55 | 2.30 ± 0.53 | 2.05 ± 0.58 | ||
48.99 ± 6.61 | 47.19 ± 4.40 | 40.31 ± 5.42 | ||
15.66 ± 4.53 | 16.11 ± 5.00 | 13.99 ± 4.94 | ||
4.36 ± 0.78 | 4.48 ± 0.98 | 3.89 ± 0.95 |
Frequency (GHz) | Dielectric Properties | Malignant | Cirrhosis | Healthy | p-Value |
---|---|---|---|---|---|
44.33 | 53.41 | 50.81 | <0.01 | ||
12.88 | 15.12 | 14.39 | <0.01 | ||
41.26 | 50.65 | 48.27 | <0.01 | ||
13.27 | 14.98 | 14.77 | <0.01 | ||
38.98 | 48.38 | 45.72 | <0.01 | ||
45.72 | 17.40 | 18.01 | <0.01 |
Model | Accuracy (%) | Precision (%) | Recall (%) | F1 score (%) |
---|---|---|---|---|
LR | 48 | 48 | 48 | 47 |
kNN | 50 | 54 | 50 | 50 |
Tissue Type | Reference | Species | Condition | ||
---|---|---|---|---|---|
Malignant | 3.64 | 53.91 | O’Rourke et al. [7] | human | ex vivo |
18.17 | 13.31 | Peyman et al. [25] | human | ex vivo | |
Cirrhosis | 2.14 | 13.81 | O’Rourke et al. [7] | human | ex vivo |
14.8 | 19.12 | Peyman et al. [25] | human | ex vivo | |
Healthy | 1.58 | 3.85 | Gabriel et al. [26] | human | N/A |
4.66 | 35.12 | O’Rourke et al. [7] | human | ex vivo | |
9.10 | 10.29 | Lazebnik et al. [27] | human | ex vivo | |
4.13 | 13.81 | Abdilla et al. [28] | porcine | ex vivo |
Model | Accuracy (%) | Precision (%) | Recall (%) | F1 Score (%) |
---|---|---|---|---|
LR | 50 | 50 | 50 | 46 |
kNN | 44 | 53 | 44 | 47 |
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Yilmaz, T. Multiclass Classification of Hepatic Anomalies with Dielectric Properties: From Phantom Materials to Rat Hepatic Tissues. Sensors 2020, 20, 530. https://doi.org/10.3390/s20020530
Yilmaz T. Multiclass Classification of Hepatic Anomalies with Dielectric Properties: From Phantom Materials to Rat Hepatic Tissues. Sensors. 2020; 20(2):530. https://doi.org/10.3390/s20020530
Chicago/Turabian StyleYilmaz, Tuba. 2020. "Multiclass Classification of Hepatic Anomalies with Dielectric Properties: From Phantom Materials to Rat Hepatic Tissues" Sensors 20, no. 2: 530. https://doi.org/10.3390/s20020530
APA StyleYilmaz, T. (2020). Multiclass Classification of Hepatic Anomalies with Dielectric Properties: From Phantom Materials to Rat Hepatic Tissues. Sensors, 20(2), 530. https://doi.org/10.3390/s20020530