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Article

Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation

1
Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System, Science, Tsinghua University, Beijing 100084, China
2
Department of Geography, University of Brasilia (UnB), Brasilia CEP 70910-900, Brazil
3
International Joint Laboratory Sentinela, FIOCRUZ, UnB, IRD, Rio de Janeiro RJ-21040-900, Brazil
4
IRD, UM, UR, UG, UA, UMR ESPACE-DEV, 34090 Montpellier, France
5
Qian Xuesen Laboratory of Space Technology, China Academy of Space Technology, Beijing 100094, China
6
Center for Healthy Cities, Institute for China Sustainable Urbanization, Tsinghua University, Beijing 100084, China
*
Author to whom correspondence should be addressed.
Int. J. Environ. Res. Public Health 2020, 17(12), 4509; https://doi.org/10.3390/ijerph17124509
Submission received: 1 June 2020 / Revised: 17 June 2020 / Accepted: 18 June 2020 / Published: 23 June 2020

Abstract

:
In recent years there has been an increasing use of satellite Earth observation (EO) data in dengue research, in particular the identification of landscape factors affecting dengue transmission. Summarizing landscape factors and satellite EO data sources, and making the information public are helpful for guiding future research and improving health decision-making. In this case, a review of the literature would appear to be an appropriate tool. However, this is not an easy-to-use tool. The review process mainly includes defining the topic, searching, screening at both title/abstract and full-text levels and data extraction that needs consistent knowledge from experts and is time-consuming and labor intensive. In this context, this study integrates the review process, text scoring, active learning (AL) mechanism, and bidirectional long short-term memory (BiLSTM) networks, and proposes a semi-supervised text classification framework that enables the efficient and accurate selection of the relevant articles. Specifically, text scoring and BiLSTM-based active learning were used to replace the title/abstract screening and full-text screening, respectively, which greatly reduces the human workload. In this study, 101 relevant articles were selected from 4 bibliographic databases, and a catalogue of essential dengue landscape factors was identified and divided into four categories: land use (LU), land cover (LC), topography and continuous land surface features. Moreover, various satellite EO sensors and products used for identifying landscape factors were tabulated. Finally, possible future directions of applying satellite EO data in dengue research in terms of landscape patterns, satellite sensors and deep learning were proposed. The proposed semi-supervised text classification framework was successfully applied in research evidence synthesis that could be easily applied to other topics, particularly in an interdisciplinary context.

1. Introduction

According to the World Health Organism (WHO), dengue affects over half of the global population, with an estimated 100–400 million infections each year worldwide [1]. In recent years, dengue has been transmitted to new geographical areas in the world, and dengue epidemics are increasing in frequency and magnitude [2].
The spatial concentration and diffusion of dengue vectors/cases can be affected by weather conditions and landscape factors (e.g., vegetation, transport, urbanization) at different spatial scales (e.g., global, regional, and local scales) [3,4,5]. The advances in satellite Earth observation (EO) readily benefit the identification of dengue landscape factors by providing a better monitoring of the Earth’s surface at different spatio-temporal scales, and entomological/epidemiological dengue risk mapping benefits from the use of satellite EO data [5]. In practice, satellite EO data, combined with weather data, can be used to predict the likelihood of future dengue epidemics so that preventative measures can be taken in advance, such as eliminating mosquito-breeding sites. Compared with weather factors, landscape factors are often more complex as landscape is often related to the vectorial capacity through vector resting and breeding sites, human–vector encounters or human mobility in different geographic contexts and at different spatial scales [6]. Several important reviews have covered such information, for example, Parselia et al. [7] proposed a scoping review that identified studies using satellite EO data for epidemiological modeling of malaria, dengue and West Nile Virus (WNV) published from 2012 to 2018. However, only 15 studies were identified for dengue where satellite EO data were used to identify meteorological and environmental factors. Sallam et al. [8] proposed a systematic review that summarized land cover, meteorological and socioeconomic factors of Aedes habitats, referring to dengue vectors. Moreover, our previous mapping review [9] focused on the dengue transmission in urban landscapes, and urban landscape factors derived from satellite EO data, Geographic Information System (GIS) techniques and survey questionnaires; spatial scales and dengue–landscape relationships were identified from 78 relevant studies published from inception to 31 December 2019. Despite all this, there is still a lack of overview on satellite EO data and landscape factors that could be of benefit to science and society by guiding future studies of disease risk prediction and improving health decision-making at different spatial scales (e.g., from global to local).
Information updates can be simply conducted by re-running the process of review, which would mainly include defining the research question, searching for and removing duplicates, title abstract screening, full-text eligibility and inclusion [10,11]. However, the selection of relevant studies is time-consuming and is highly dependent on the perception of reviewers, especially for title abstract screening and full-text eligibility. Under such constrained circumstances, text classification appears particularly relevant. As a typical topic in natural language processing (NLP), multiple algorithms in text classification have proved to be efficient in replacing the manual evaluation of bibliographic records (e.g., titles and/or abstracts) and reducing human workload, such as term weighting [12] and multiple machine learning (ML) algorithms [13,14,15]. Recent advances in deep learning (DL) based on convolutional neutral networks (CNNs) and recurrent neural networks (RNNs) have been used in text classification [16,17,18]. Since text classification can be considered as one sequential modelling task, RNNs have been used more frequently because of their specificity for sequential modelling tasks [16]. One kind of RNN, the long short-term memory (LSTM) performs well in text classification because it can effectively solve the problems of exploding and vanishing gradients and capture long-term dependencies in text [19]. The bidirectional LSTM (BiLSTM) is a development of the LSTM and combines forward hidden and backward hidden layers that often work better than LSTM in text classification [16]. However, when applying the algorithms above, we need to label sufficiently good-quality samples for training and validating models, which is quite time-consuming. However, deep active learning (DAL), integrating active learning (AL) in DL architecture, is able to achieve text classification based on few labelled data which can minimize the work of human labelling [20,21,22]. It would seem to be more appropriate to implement text classification based on a new bibliographic dataset for selecting relevant records, while the labelled data derived from active learning could be used as training data to train the DL architecture [22].
In this context, focusing on landscape factors affecting dengue transmission and satellite EO data currently used for identifying landscape factors, this study proposes to build a semi-supervised classification framework of literature by integrating the review process and text classification algorithms and provides an overview of dengue landscape factors and satellite EO data. The proposed framework allows for rational and effective selection of literature relevant to our objective from bibliographic databases.

2. Towards a Semi-Supervised Classification Framework of Literature

The framework of semi-supervised text classification integrating the review process and semi-automatic text classification (Figure 1), includes: (1) defining the research question and specifying the inclusion criteria (Section 2.1); (2) conducting a board search and removing the duplicates (Section 2.2); (3) screening titles and abstracts based on text scoring (Section 2.3); (4) preparing relevant and irrelevant samples, and conducting the BiLSTM-based active learning (Section 2.4); (5) verifying the performance of text scoring and BiLSTM-based active learning (Section 2.5); and (6) extracting dengue landscape factors and satellite EO data and charting the results (Section 2.6).
To implement the text scoring in step 3, it is necessary to remove the records that are definitively irrelevant to our topic, which also reduces the amount of data for the BiLSTM-based active learning in step 4. It should be noted that the BiLSTM model was developed and implemented based on titles and abstracts that are different from the full-text assessment in the eligibility step of the review. The detailed information is presented hereafter and no ethics approval is needed as this method is based on published journal articles.

2.1. Research Question and Inclusion Criteria

The objective of this study is to provide an overview on landscape factors related to dengue transmission and satellite EO data used in the identification of dengue landscape factors. Relevant records should satisfy the following criteria: (1) being an original journal article published in English; (2) highlighting landscape factors derived from satellite EO data or geographic information system (GIS) techniques; (3) being applied to dengue cases or dengue vectors; (4) modelling or correlating dengue with landscape factors. These were defined based on our objective and expert knowledge, and were used for text scoring and record sample selection for BiLSTM models.

2.2. Board Searches and Removal of Duplicates

The searches were performed from inception to 31 December 2019 in four databases: Science Direct, Web of Science, PubMed and Scopus, by considering the titles and abstracts of English journal articles. The queries were formed by combining dengue-related terms (i.e., dengue and Aedes) and the words related to “remote sensing”, “landscape” and “weather” (i.e., remote sensing, satellite, earth observation, landscape, land cover, land use, household, dwelling, habitation, precipitation and temperature) using the Boolean operator “AND” (see more details in Table A1). All search records were combined together and the duplicate records were removed using the MySQL database. The remaining records were organized in alphabetical order for further analysis.

2.3. Text Scoring

To efficiently eliminate the definitely-irrelevant records, we used text weighting and text scoring for ranking all the records. First, we pre-set some terms KEYi (i = 1, …, m) and their priority levels (i.e., high, medium and low) (Table 1) according to the criteria in Section 2.1. Each of them was randomly assigned a weight value WEIGHTi (i = 1, …, m) from the interval of weights that was set according to its priority level. The higher the priority level of a term, the greater its weight value. We then extracted the key terms Kj (j = 1, …, n) and their corresponding weight values Wj (j = 1, 2, …, n) from the title and abstract using the Natural Language Toolkit (NLTK) in Python. If Kj contains pre-set terms in KEYi, we calculated the score of a record as Score =   WEIGHT i * W j (i = 1, …, m; j = 1, …, n). For example, through keyword extraction using NLTK, a bibliographic record has two key terms “dengue” and “satellite”, and their weights are W(dengue) and W(satellite). According to Table 1, the weights of these two terms were randomly assigned to 8 and 5. In this case, the score of this text is W (dengue)*8 + W (satellite)*5.
All the records were then ranked in decreasing order according to the scores, and the top 1000 records were selected and merged into a subset denoted as Uk. Finally, we iterated the second step 20 times, and the records in the 20 subsets Uk (k = 1, …, 20) were combined together, and were used for the next analysis. It should be noted that random assignment of weights allows multiple iterations of text scoring that should make the results more reliable.

2.4. BiLSTM-Based Active Learning

To efficiently and accurately select relevant records in the absence of sufficient labelled samples, we performed a BiLSTM-based active learning based on the titles and abstracts of the records derived from text scoring (Figure 1).
Prior to training the BiLSTM model (see more details in Appendix C) [23], we created an initial training dataset by selecting 15 relevant samples and 30 irrelevant samples from the results of text scoring based on the criteria in Section 2.1. The initial training dataset was used to train the BiLSTM model.
Based on the word embedding derived from the unlabelled data using the Word2Vec CBOW model [24] (see more details in Appendix B), the BiLSTM model was used to identify the “potential” records from unlabelled data, which were then manually labelled as either relevant or irrelevant based on the four criteria in Section 2.1. Meanwhile, we improved the training dataset by combining the selected relevant records and previous relevant samples, and randomly selected irrelevant records from the results of text scoring in order to keep the ratio of relevant and irrelevant samples at 1:2. Finally, the BiLSTM model was re-trained using the new training dataset to identify the potential citations from the remaining unlabelled data. The parameters of the BiLSTM architecture were updated by training the results from the previous round. BiLSTM learning and active learning were alternately implemented until we could not find any relevant records.

2.5. Inclusion, Perfomance and Rationality

Because all the algorithms were implemented based on the titles and abstracts, we evaluated the full-texts of the records derived from BiLSTM-based active learning for final inclusion of the articles that met the criteria in Section 2.1. In fact, bibliographic databases might misclassify some records as English journal articles and store their English titles and abstracts.
To verify the performance of the algorithms of text scoring and BiLSTM-active learning, we randomly selected 10% of unlabelled records derived from BiLSTM-based active learning and manually interpreted them as either relevant or irrelevant. This step was iterated three times. Moreover, to verify the rationality of text scoring and BiLSTM-based active learning, we computed the number of relevant records per score rank interval. Generally, the more relevant a record is to the topic in question, the greater the possibility it will receive a high score.

2.6. Information Extraction and Analysis

The satellite EO data and landscape factors were extracted manually and synthesized narratively in two ways: (1) charting the dengue landscape factors and their typologies in order to appraise the current situation, regardless of the differences in study areas, methods and materials; (2) tabulating the key characteristics of satellite EO data.

3. Results and Discussions

3.1. Semi-Supervised Text Classification

Table 2 presents the number of records for each step of semi-supervised text classification. A total of 13,893 bibliographic records were obtained after the broad search, and 7696 records were included after the removal of duplicates. Then, based on text scoring, we identified 2034 possible records, and 131 records were included after the BiLSTM-based active learning that met the inclusion criteria in Section 2.1. Finally, by reading the full texts, we included 101 articles (see more details in Appendix C). The non-English articles (e.g., Chinese, Spanish and Portuguese) and non-journal articles (e.g., book chapters, reviews or conference papers) were excluded.
Table 3 presents the results of each cycle of BiLSTM-based active learning. Evidently, all the relevant records were identified after the fourth cycle. Throughout the process of semi-supervised text classification, we manually evaluated 1056 titles/abstracts (Table 3).
Moreover, the accurate and rational identification of relevant records can be indicated by the following two facts. First, no relevant records were found by manually evaluating the records selected randomly from the unlabelled dataset (i.e., 925 records after BiLSTM-based active learning). This indicated a good performance of the semi-supervised text classification. Second, although each record probably received different scores in 20 text scoring experiments, the number of relevant records per score rank interval showed a consistent decreasing trend (Figure 2). This indicated the rationality of text scoring using the preset terms and priority levels, that is, the more relevant a record is to the topic question, the greater the possibility it will receive a high score.
The accurate and rational identification of relevant records can be explained by the facts: (1) A clear topic was defined. In fact, modelling or correlating dengue epidemiological or entomological variables with landscape factors in different geographic contexts often includes the identification of landscape factors, landscape characterization and spatio-temporal analysis of dengue cases or vectors. This interdisciplinary topic provides evident features that meet the definition of appropriate inclusion criteria. These criteria then help to define terms and priority levels for text scoring and active learning. (2) The union of the results of 20 text scoring experiments enable the inclusion of potential records as much as possible, and greatly exclude the irrelevant records. (3) BiLSTM has proved to be especially useful in understanding the context of words [23], and active learning based on clear and appropriate inclusion criteria allows for the accurate selection of relevant records and for the control of the balance of positive and negative samples in training datasets for each cycle in BiLSTM learning. Moreover, it should be noted that other models are possible, such as BiLSTM with attention mechanism (AC-BiLSTM) [16] or a combination of CNN and LSTM (C-LSTM) [25], which might generate a high accuracy of text classification.

3.2. Dengue Landscape Factors

Due to the different study objectives, study areas and spatio-temporal scales, it is difficult to compare the 101 selected studies to find any underlying common viewpoints on the role of landscape factors in dengue transmission. The detailed landscape factors for each study are listed in Table A2. Here, we simply grouped these landscape factors into four categories according to the study [26] (Figure 3):
  • Land cover (LC) refers to the physical and biological cover over the land surface, including built-up areas, vegetation, water/wetlands, open land and savannah. Among them, vegetation often has an association with the vectors’ behaviours and biological cycles, which could be linked with the spatial and temporal dynamics of vectors or the potential resting and breeding sites. Water and wetlands often provide information of places of stagnant water, which are potential breeding sites for dengue vectors.
  • Land use (LU) refers to a territory characterized by current and future planned functional or socio-economic purposes, including agricultural areas, commercial areas, construction areas, industrial areas, ponds, religious areas, residential areas, transport, unused areas, urban areas and rural areas. LU types not only indicate whether the areas are favourable to vector breeding, but also provide information of human behaviour and activities in the areas, the levels of human–Aedes encounters, dispersal of mosquitoes and people movement, which are significantly related to dengue epidemics.
  • Topographic factors may provide a proxy of habitat suitability or climate conditions, including elevation, aspect, slope, drainage network, and flow accumulation.
  • Spatially continuous land surface features include spectral indices of vegetation, water and built-up areas (e.g., normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), vegetation fraction index (VFC), normalized difference water index (NDWI), and normalized difference built-up index (NDBI)). Moreover, land surface temperature (LST) refers to a measure of radiative skin temperature of the land surface, which is a significant factor affecting the dengue transmission.

3.3. Satellite Earth Observation Data

Among the 101 included articles, only 64 studies used satellite EO data. Table 4 presents the satellite EO sensors, derived products and spatio-temporal resolutions used for identifying dengue landscape factors in selected studies. Evidently, for LU/LC mapping, most studies used very fine (i.e., pixel size < 10 m) and fine (i.e., 10 m ≤ pixel size < 100 m) spatial resolution data, including multi-spectral bands derived from Landsat 4 Thematic Mapper (TM), Landsat 5 TM, Landsat 7 Enhanced Thematic Mapper (ETM+), Landsat 8 Operational Land Imager (OLI), Indian Remote-Sensing Satellite-P6 (IRS-P6), Satellite Pour l’Observation de la Terre 4 (SPOT-4), Sentinel-2, GaoFen-1, SPOT-5, Advanced Land Observing Satellite (ALOS), IKONOS and Quickbird. For topographic factors, two global scale and freely available digital elevation models (DEMs) at resolutions of 30 m and 90 m from the Shuttle Radar Topography Mission (SRTM) and the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) mission were used to extract topographic features. For continuous land surface features, moderate resolution imaging spectroradiometer (MODIS) products with coarse resolution (i.e., 1000 m ≤ pixel size < 10,000 m) and moderate resolution (i.e., 100 m ≤ pixel size < 1000 m) were widely used to characterize them. In addition, some EO data with fine resolution (i.e., 10 m ≤ pixel size < 100 m) have also made a contribution, such as data from Landsat 5, 7 and 8, SPOT 5 and GeoFen-1.
Although satellite EO sensors and products are pointed out, we do not explain what should be considered while choosing satellite EO data, and making effective use of them. This is an important issue, especially for non-specialized users. Hamm et al. [26] proposed that spatio-temporal scales, uncertainty, spatial quality of EO data and the interaction between uncertainty in EO and disease data should be considered when using EO data for the study of neglected tropical diseases (NTD) (e.g., echinococcosis, schistosomiasis and leptospirosis). This is useful for evaluating EO data in dengue research.

4. Possible Future Directions: Landscape Patterns, Satellite Sensors and Deep Learning

4.1. In Terms of Landscape Patterns

More in-depth landscape features (e.g., compositional and configurational patterns) could be explored in future studies. Our previous studies characterized forest/non-forest landscapes by computing various landscape metrics and established their links with malaria cases for understanding the contribution of Amazon deforestation on human–vector contact [28,29]. We found very few examples that used landscape metrics in dengue epidemiology, although these metrics have been widely applied in the assessment of LULC changes.

4.2. In Terms of Satellite Sensors

LU/LC mapping has continued to be an important research area in recent years, in particular urban LU/LC mapping. Gong et al. [30] proposed the two-level essential urban land use categories (EULUC) and archived the preliminary results of 30 m in China for 2018 using Sentinel-2 images, Luojia night time light data, mobile phone locating request data and point of interests (POI) data. According to our findings (Figure 3), EULUC classes were mostly related to dengue transmission (e.g., residential, commercial, industrial and transportation). Global essential urban land use maps with fine spatial resolution could be useful for landscape-related studies of dengue. Moreover, developing LU/LC maps and integrating them for dengue research in tropical and subtropical regions is difficult due to the presence of clouds and cloud shadows. Synthetic aperture radar (SAR) images could penetrate such barriers and have recently been used for vector-borne disease application [31,32]. However, we found no specific study that used SAR data in dengue research. Third, deep learning frameworks have been increasingly used to predict dengue outbreaks. Many studies have used weather data (e.g., temperature, wind speed, precipitation, humidity), population data and previous dengue cases in deep learning models [33,34].

4.3. In Terms of Deep Learning

More recently, one study extracted landscape features (e.g., building, roads, trees, crops, waterway and standing water) from high resolution satellite EO data using CNN models and transfer learning, and added them into time series prediction of dengue outbreaks based on weather data and population density for improving the performance of prediction [35]. This would be a new direction that is practical for identifying the landscape factors with limited labelled data, understanding the landscape–dengue relationships or improving the deep learning-based temporal prediction of dengue risk.

5. Conclusions

Satellite EO has been increasingly used in dengue research over the past years, especially for the identification of dengue landscape factors. During that time, various types of landscape factors were considered while the study areas and research objectives have become more complex, and the variety and volume of satellite EO data have been growing over these years. There is an increasing need to know what dengue landscape factors have been studied and what dengue landscape factors have been derived from satellite EO data during the past years. In this study, by integrating the review process, AL mechanism, text scoring and BiLSTM model, we propose a semi-supervised text classification framework that enables the efficient evaluation of bibliographic records derived from bibliographic databases and accurately selects the articles relevant to the research objective. In this study, 101 relevant articles were efficiently selected from bibliographic databases using the proposed approach. Among them, 64 articles used satellite EO data. Valuable information on dengue landscape factors and current satellite EO data was reported. A catalogue of essential dengue landscape factors were identified that were divided into four categories: LU, LC, topography and continuous land surface features. These factors were considered as the direct or indirect proxies of Aedes breeding and resting sites, human–Aedes encounters, human mobility and virus replication in dengue transmission. Moreover, future research directions on how to integrate satellite EO data in dengue research were proposed in terms of landscape patterns, satellite sensors and deep learning. This study is an important step towards an efficient method for research evidence synthesis that could be easily applied to other topics, particularly in an interdisciplinary context.

Author Contributions

Z.L.: conceptualization, methodology, data analysis, funding acquisition, writing the original manuscript and reviewing the bibliography; H.G.: data analysis and reviewing the manuscript; L.H.: data analysis and reviewing the manuscript; L.X.: reviewing the manuscript; N.D.: reviewing the manuscript; P.G.: conceptualization, methodology and reviewing the manuscript. All authors have read and approved the final manuscript.

Funding

This research was supported by the National Natural Science Foundation of China (NSFC) (Project no.: 41801336). This research was also partially supported by a donation from Delos Living LLC to Tsinghua University.

Conflicts of Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Appendix A. Board Searches

Table A1. Search terms and number of records derived from bibliographic databases.
Table A1. Search terms and number of records derived from bibliographic databases.
No.Search TermsWSSDScopusPubMed
1dengue AND dwelling26676619
2dengue AND earth observation13043
3dengue AND habitation3732211
4dengue AND household61854101282
5dengue AND land cover11443120
6dengue AND land use11641512035
7dengue AND landscape1791110170
8dengue AND precipitation23830175125
9dengue AND remote sensing117105625
10dengue AND satellite.112115641
11dengue AND temperature19761451120748
12Aedes AND dwelling733813952
13Aedes AND earth observation11132
14Aedes AND habitation8833814
15Aedes AND household55131430187
16Aedes AND land cover26644639
17Aedes AND land use32321920346
18Aedes AND landscape295915395
19Aedes AND precipitation33221197127
20Aedes AND remote sensing13305424
21Aedes AND satellite124136846
22Aedes AND temperature34431711616824

Appendix B. Word Embedding

Word2Vec [24] is based on deep learning, which could learn grammar and semantic information from a large amount of unlabelled data. Word2Vec Continuous Bag-Of-Words Model (CBOW) model maps each word to a V-dimensional word vector by training, and can calculate the similarity between word vectors to represent the semantic similarity of the text. Word2Vec CBOW architecture predicts the current word based on the context. The input layer here is composed of one-hot encoded input contexts X1,...,Xc, where the window size is C, the glossary size is V and the hidden layer is an N-dimensional vector. The final output layer is the output word y that is also encoded by one-hot. The input vector encoded by one-hot is connected to the hidden layer by a V × N-dimensional weight matrix W and the hidden layer is connected to the output layer by an N × V weight matrix W′.

Appendix C. Bidirectional Long Short-Term Memory Model

Generally, LSTM-based RNNs consist of three gates: one input gate it with corresponding weight matrix Wxi, Whi, Wci, bi; one forget gate ft with corresponding weight matrix Wxf, Whf, Wcf, bf; one output gate ot with corresponding weight matrix Wxo, Who, Wco, bo. The operation can be summarized as the process of forgetting old information and memorizing new information in the state of the cell, so that information useful for subsequent process operations is passed, and useless information is discarded. The hidden layer state hi is output at each time step. In the process, all gates are set to generate some parameters, using current input xi, the state hi-1 that the previous step generated, and current state of this cell ci-1 (peephole), for the decisions whether to take the inputs, forget the memory stored before, and output the state generated later. The computation can be explained by the following equations:
i t = σ ( W x i x t + W h i h t 1 + W c i c t 1 + b i )
f t = σ ( W x f x t + W h f h t 1 + W c f c t 1 + b f )
g t = t a n h ( W x c x t + W h c h t 1 + W c c c t 1 + b c )
c t = i t g t + f t c t 1
o t = σ ( W x o x t + W h o h t 1 + W c o c t + b o )
h t = o t t a n h ( c t )
The BiLSTM uses two independent LSTMs to process the data in both directions and then connects the two final output vectors from both directions.

Appendix D. List of Articles Derived from the Semi-Supervised Text Classification Framework. Reference List was Alphabetized by the Last Name of the First Author of Each Work. References by the Same Author were Listed Chronologically with the Earliest Work First

Table A2. Satellite EO data and dengue landscape factors extracted each of the 101 relevant articles derived from the semi-supervised framework of literature.
Table A2. Satellite EO data and dengue landscape factors extracted each of the 101 relevant articles derived from the semi-supervised framework of literature.
ID [Ref.]First Author/YearTitleEO DataLandscape Factors
1 [36]Acharya et al., 2018 Temporal Variations and Associated Remotely Sensed Environmental Variables of Dengue Fever in Chitwan District, NepalMODISMOD13C25NDVI, EVI
MODISMYD11C3nLST, dLST
9 [37]Acharya et al., 2018Modeling the spatially varying risk factors of dengue fever in Jhapa district, Nepal, using the semi-parametric geographically weighted regression modelLandsat 8 OLI/TIRSThermal bandLST
Landsat 8 OLI/TIRSG, R, NIR, SWIRNDVI, NDWI, NDBI
2 [38]Akter et al., 2017Socio-demographic, ecological factors and dengue infection trends in Australia- -
3 [39]Albrieu-Llinas et al., 2018Urban environmental clustering to assess the spatial dynamics of Aedes aegypti breeding sitesSPOT 5Spectral bandsBare soil, Water, Wetlands, Grass, Tree, Built-up
LandsatNIR, SWIR, TIRNBRT
4 [40]Ali and Ahmad, 2018Using analytic hierarchy process with GIS for Dengue risk mapping in Kolkata Municipal Corporation, West Bengal, IndiaSRTM (SIR-C)SRTM DEMElevation
Sentinel 2Spectral bandsBare soil, Water, Vegetation, Built-up
Landsat 7 ETM+Thermal bandLST
5 [41]Anno et al., 2015Space-time clustering characteristics of dengue based on ecological, socio-economic and demographic factors in northern Sri LankaALOS/AVNIR-2B, G, R, NIRUrbanization ratio
6 [42]Araujo et al., 2014Sao Paulo urban heat islands have a higher incidence of dengue than other urban areasLandsat 5 TMThermal bandLST
Landsat 5 TMNIRVegetation
7 [43]Arboleda et al., 2009Mapping Environmental Dimensions of Dengue Fever Transmission Risk in the Aburra Valley, ColombiaSRTM (SIR-C)SRTM DEMElevation, Aspect, Slope
Landsat 7 ETM +R, NIRNDVI
Landsat 7 ETM +Spectral bandsB, G, R, NIR, SWIR1, SWIR 2, Thermal band
8 [44]Arboleda et al., 2011Spatial and temporal dynamics of Aedes aegypti larval sites in Bello, ColombiaSRTM (SIR-C)SRTM DEMSlope, Aspect, Slope
Landsat 7 ETM +R, NIRNDVI
Landsat 7 ETM +Spectral bandsB, G, R, NIR, SWIR1, SWIR 2, Thermal band
10 [45]Ashby et al., 2017Niche Modeling of Dengue Fever Using Remotely Sensed Environmental Factors and Boosted Regression TreesMODISMYD11A1nLST, dLST
MODISMYD09GQEVI
SRTM (SIR-C)SRTM DEMElevation
MODISMCD12Q1Bare soil, Cropland, Forest, Savanna, Urban, Wetlands, Shrubland
11 [46]Attaway et al., 2016Risk analysis for dengue suitability in Africa using the ArcGIS predictive analysis tools (PA tools)---
12 [47]Aziz, S. et al. (2014)Spatial density of Aedes distribution in urban areas: A case study of Breteau index in Kuala Lumpur, MalaysiaSPOT 5-Water, Built-up, Sparse vegetation, Dense vegetation, Cleared area
13 [48]Beilhe, Leila Bagny et al. (2012)Spread of invasive Aedes albopictus and decline of resident Aedes aegypti in urban areas of Mayotte 2007–2010---
14 [49]Bett, Bernard et al. (2019)Spatiotemporal analysis of historical records (2001–2012) on dengue fever in Vietnam and development of a statistical model for forecasting risk.MODISMCD12Q1Forest, Woodland, Grass, Shrub, Cropland, Built-up, Wetlands
15 [50]Bhardwaj et al. (2012)Developing a statistical dengue risk prediction model for the state of Delhi based on various environmental variablesLandsat 7 ETM+ -Built-up, Vegetation
16 [51]Buczak et al. (2012)A data-driven epidemiological prediction method for dengue outbreaks using local and remote sensing dataMODIS-NDVI, EVI
17 [52]Buczak et al. (2014)Prediction of High Incidence of Dengue in the PhilippinesMODIS-NDVI, EVI
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Figure 1. The overall workflow of semi-supervised text classification.
Figure 1. The overall workflow of semi-supervised text classification.
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Figure 2. The distribution of the number of relevant records per score rank interval. The grey line represents the distribution of 131 relevant records according to the rank intervals for each of the 20 text scoring experiments, and the red line represents the mean number of relevant records in each score interval.
Figure 2. The distribution of the number of relevant records per score rank interval. The grey line represents the distribution of 131 relevant records according to the rank intervals for each of the 20 text scoring experiments, and the red line represents the mean number of relevant records in each score interval.
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Figure 3. Overview of essential dengue landscape factors derived from the selected articles.
Figure 3. Overview of essential dengue landscape factors derived from the selected articles.
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Table 1. Pre-set terms and priority levels for titles and abstract scoring.
Table 1. Pre-set terms and priority levels for titles and abstract scoring.
Priority LevelsPre-Set Terms (KEYi) Included for Text ScoringInterval of Weights
Highdengue, environment, landscape, land cover, land use, vegetation, tree, water, built, road, residential, commercial, industrial, normalized difference vegetation index (NDVI), normalized difference water index (NDWI), elevation[7,10]
Mediumremote sensing, satellite, earth observation[4,7]
Lowtemperature, precipitation [1,4]
Table 2. Number of records derived from each step of semi-supervised text classification.
Table 2. Number of records derived from each step of semi-supervised text classification.
No.Semi-Supervised Text Classification ProcessesNumber of Records
1Board searches13,893
2Removal of duplicates7696
3Text scoring2034
4Bidirectional long short-term memory (BiLSTM) active learning131
5Inclusion101
Table 3. Relevant and unlabeled records derived from BiLSTM-based active learning.
Table 3. Relevant and unlabeled records derived from BiLSTM-based active learning.
CyclesBiLSTMActive LearningRest Records
RelevantUnlabeled
Before------2034
1st599885111435
2nd323392841112
3rd723691036
4th42141994
5th20020974
Total10561319250
Table 4. Satellite Earth observation sensors and derived products used for identifying dengue landscape factors. Information on spatial and temporal resolution was taken from Huete et al. [27], Hamm et al. [26] and Marti et al. [9].
Table 4. Satellite Earth observation sensors and derived products used for identifying dengue landscape factors. Information on spatial and temporal resolution was taken from Huete et al. [27], Hamm et al. [26] and Marti et al. [9].
Sensors/ProductsVariablesSpatial Resolution Temporal ResolutionLaunched/End of Mission
MODISMOD11C3LST5.5 kmMonthly2000-02-01 to Present
MOD13C2NDVI, VFC5.5 kmMonthly2000-02-01 to Present
MYD11C3nLST, dLST5.5 kmMonthly2002-07-01 to Present
MYD11A1LST1 kmDaily2002-07-04 to Present
MOD11A2LST, nLST, dLST1 km8 days2000-02-18 to Present
MOD13A3NDVI, VFC1 kmMonthly2000-02-01 to Present
MOD13C1NDVI, EVI500 m16 days2000-02-18 to Present
MCD12Q1LC500 mYearly2001-01-01 to 2018-12-31
MxD09A1NDVI250 m8 days
MOD09Q1NDWI250 m8 days2000-02-24 to Present
MOD13Q1NDVI, EVI, LC250 m16 days2000-02-18 to Present
MYD09GQEVI250 mDaily2002-07-04 to Present
AVHRR/2 LST1.1 kmDaily1981-06 to 1986-06
SRTM SIR-C SRTM DEMElevation, aspect, slope, drainage, flow accumulation and steam feature30 m/90 m-Released in 2000
ASTERGDEMElevation, drainage30 m-Released in 2009 (v1)
Released in 2011 (v2)
Released in 2019 (v3)
Landsat 4 TM LU/LC30 m16 days1982-07 to 1993-12
Landsat 5 TM LU/LC, TCB, TCW, TCG, LST, NDVI30 m 16 days1984-03 to 2013-06
Landsat 7 ETM+ LU/LC, NDVI, LST, B, G, R, NIR, SWIR1, SWIR2, thermal band30 m16 days1999-04 to Present
Landsat 8 OLI LU/LC, NDVI, NDWI, NDBI, LST30 m16 days2013-02 to Present
IRS-P6 LC24 m5 days2003-10 to 2013-09
SPOT 4 LU/LC20 m2–3 days1998-03 to 2013-06
Sentinel-2 LC10 m10 days2015-06 to Present (2A)
2017-03 to Present (2B)
GaoFen-1 LC, NDWI16 m≤ 4 days 2013-04 to Present
SPOT 5 LU/LC, NDVI, NDWI2.5 m, 5 m/10 m2–3 days2002-05 to 2015-03
ALOS AVNIR-2 LU/LC10 m14 days1996-08 to 2011-05
ZY-3 LU/LC2.1 m/5.8 m5 days2012-01 to Present
IKONOS LU4 mApproximately 3 days 1999-09 to 2015-03
Quickbird LU/LC2.4 m/0.6 m1–3.5 days2001-10 to 2015-01
Worldview-2 LC0.5 m/1.8 m1.1 days2009-10 to Present
MODIS: Moderate Resolution Imaging Spectroradiometer; LST: Land Surface Temperature; NDVI: Normalized Difference Vegetation Index; NDBI: Normalized Difference Built-up Index; NDWI: Normalized Difference Water Index; VFC: Vegetation Fractional Coverage; EVI: Enhanced Vegetation Index; AVHRR: Advanced Very High Resolution Radiometer; SRTM: Shuttle Radar Topography Mission; SIR-C: Spaceborne Imaging Radar-C; DEM: Digital Elevation Model; ASTER: Advanced Spaceborne Thermal Emission and Reflection Radiometer; GDEM: Global Digital Elevation Model; TM: Thematic Mapper; ETM+: Enhanced Thematic Mapper; OLI: Operational Land Imager; LU: Land Use; LC: Land Cover; TCB: Tasseled Cap Brightness; TCW: Tasseled Cap Wetness; TCG: Tasseled Cap Greenness; B: Blue band; G: Green band; R: Red band; NIR: Infrared Band; SWIR: Short-wave infrared band; ZY-3: Ziyuan 3; IRS-P6: Indian Remote-Sensing Satellite-P6; SPOT: Satellite Pour l’Observation de la Terre; ALOS: Advanced Land Observing Satellite; AVNIR-2: Advanced Visible and Near Infrared Radiometer type 2.

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MDPI and ACS Style

Li, Z.; Gurgel, H.; Dessay, N.; Hu, L.; Xu, L.; Gong, P. Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation. Int. J. Environ. Res. Public Health 2020, 17, 4509. https://doi.org/10.3390/ijerph17124509

AMA Style

Li Z, Gurgel H, Dessay N, Hu L, Xu L, Gong P. Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation. International Journal of Environmental Research and Public Health. 2020; 17(12):4509. https://doi.org/10.3390/ijerph17124509

Chicago/Turabian Style

Li, Zhichao, Helen Gurgel, Nadine Dessay, Luojia Hu, Lei Xu, and Peng Gong. 2020. "Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation" International Journal of Environmental Research and Public Health 17, no. 12: 4509. https://doi.org/10.3390/ijerph17124509

APA Style

Li, Z., Gurgel, H., Dessay, N., Hu, L., Xu, L., & Gong, P. (2020). Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation. International Journal of Environmental Research and Public Health, 17(12), 4509. https://doi.org/10.3390/ijerph17124509

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