Fusiform rust resistance can involve gene-for-gene interactions where resistance (
Fr) genes in the host interact with corresponding avirulence genes in the pathogen,
Cronartium quercuum f.sp.
fusiforme (
Cqf). Here, we identify trees with
Fr genes in a loblolly pine population
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Fusiform rust resistance can involve gene-for-gene interactions where resistance (
Fr) genes in the host interact with corresponding avirulence genes in the pathogen,
Cronartium quercuum f.sp.
fusiforme (
Cqf). Here, we identify trees with
Fr genes in a loblolly pine population derived from a complex mating design challenged with two
Cqf inocula (one gall and 10 gall mixtures). We used single nucleotide polymorphism (SNP) genotypes at sufficient density to ensure linkage between segregating markers and
Fr genes identifying SNPs that explained high proportions of variance in disease incidence using BayesCp, that also were significant using Bayesian Association with Missing Data (BAMD) software. Two SNPs mapped near
Fr1 and generated significant LOD scores in single marker regression analyses for
Fr1/fr1 parent 17 as well as four other parents. One SNP mapped near
Fr8 and was significant for parent 28. Two SNPs mapped to linkage groups not previously shown to contain
Fr genes and were significant for three parents. Parent 2 showed evidence of
Fr gene stacking. Our results suggest that it is feasible to identify trees segregating for
Fr genes, and to map
Fr genes, based on parental analysis of SNPs that cosegregate with disease incidence in designed resistance screening trials.
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