IoMT-Based Automated Diagnosis of Autoimmune Diseases Using MultiStage Classification Scheme for Sustainable Smart Cities
Abstract
:1. Introduction
2. Contributions
- The proposed feature set was based on the first stage classification results, which showed less within-class variance and more between-class variance as compared to well-known spectral, statistical, and textural features, which made them the best predictors for classification problems.
- The images in the dataset were separated into low-information and medium-information images based on the average intensity and contrast, and special preprocessing was applied for low-information images, which will eventually increase the performance of the classification task.
- Unlike CNN, the data augmentation and optimization of many parameters were not required.
- The architecture can be applied to complicated texture-based multiclass classification problems.
3. Related Works
- First stage classification uses BT1, ANN1, and SVM1, which are also proved as suitable features for the second stage performance results.
- Considering the performance, three-stage classification architecture was implemented, which does not require data augmentation and many parameter optimizations.
- Special preprocessing was applied for dark and low contrast intermediate cells to enhance the image information after segregating from positive cells based on average intensity instead of common preprocessing for intermediate and positive cells.
4. IoMT-Based Automation of Autoimmune Diagnostics Using MSCS: Methods and Materials
4.1. Multistage Classifier Scheme for HEp-2 Cell Classification
4.1.1. Preprocessing
4.1.2. Feature Extraction
- Statistical features (Stat): A valuable representation of data for study can also be conveniently derived from the statistical functionality. The number of “one” pixels in the binary picture is the area of the cell. Any information about the dispersion of the intensity in the cell is given by the standard deviation of the picture. For the HEp-2 cell classification, the number of items in the cells was also an excellent discriminating feature.
- Principal component Analysis (PCA): Is a statistical approach that utilizes orthogonal transformation to convert results. For Cell Image, the PCA was applied. For the Feature Set, the first six eigenvalues are taken.
- Textural features (text): The texture is described in the neighborhood by the spatial distribution of gray levels [29]. The literature review noted that for the classification task, textural descriptors were more useful.
- Statistics of co-occurrence matrix (SCM): Microtextures are seen in HEp-2 cell images. As a micro-texture descriptor [29], a gray-level co-occurrence matrix was well matched. The distribution of co-occurring values over an image at a given offset was calculated by the co-occurrence matrix (CM). The statistical properties were measured over the CM, such as homogeneity, comparison, correlation, and energy. Consequently, for one-pixel distance CM, the feature set had four components.
- Principal Component Analysis of Local Binary Pattern histogram frequency response (PCALBP) [27]: One of the important ways to explain texture is the Local Binary Pattern (LBP). The neighborhood is thresholded relative to the center pixel value. The function set has six parts.
4.2. Classifiers
- Binary tree (BT): The conditional decision tree has “true” or “false” formal outputs. In the HEp-2 cell pattern recognition problem [30], BT is used as a classifier. BT was a supervised algorithm for learning. In which, the predictors of the training images were analyzed using the Classification and Regression Trees (CART) algorithm to perform a binary split on any predictor variable. The split criterion gain was determined according to the CART algorithm by the ratio of the parent to child node Gini diversity index [30]. The minimum leaf size at which the tree’s output was optimum is the minimum observations on the leaf node. In this experiment, the minimum leaf node size set was 50. Tree splitting ends until the minimum leaf size is met by the number of observations on a leaf.
- Artificial Neural Network (ANN): ANN [31] is comparatively one of the better choices for complex classification of HEp-2 cell patterns. With ten layers, the ANN design adopted the feed-forward strategy. During the preparation of the ANN, scaled conjugate gradient backpropagation [32] was used to change the weights. Hyperbolic tangent sigmoid, hyperbolic log sigmoid, and softmax were alternatively implemented in the transition function.
- Support Vector Machine (SVM): SVM adopted the guided learning methodology. SVM was a binary classifier, essentially. The binary SVM was modeled to classify six groups using the Error-Correcting Output Code. Therefore, was used, i.e., fifteen SVMs, where K is the number of groups. A Gaussian kernel one-versus-all coding scheme was used.
- Multistage Classification Scheme (MSCS): The Multistage Classification Scheme is proposed by keeping performance improvement as an ultimate goal. The proposed MSCS retrains the base classifiers to improve the predictive accuracy in computer vision problems. The MSCS algorithm is shown in Algorithm 1.
Algorithm 1: MSCS Algorithm |
Input: The dataset , , where is the class label, represent the feature set for the cell n and N=13596 |
Output: Predicted class |
|
5. Results and Discussion
5.1. Stage 1 Results
5.2. Stage 2 Results
5.3. Stage 3 Processing and Results
6. Comparison with State of Art Methods
7. Conclusions and Future Work
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Pattern | # of Intermediate Cells | # of Positive Cells | # of Cells |
---|---|---|---|
Homogeneous | 1407 | 1087 | 2494 |
Speckled | 1374 | 1457 | 2831 |
Nucleolar | 1664 | 934 | 2598 |
Centromere | 1363 | 1378 | 2741 |
Nuclear membrane | 1265 | 943 | 2208 |
Golgi | 375 | 349 | 724 |
Total | 7448 | 6148 | 13596 |
Classifier | BT | ANN | SVM | ||||||
---|---|---|---|---|---|---|---|---|---|
Dataset | IMC | PC | Combined | IMC | PC | Combined | IMC | PC | Combined |
MCA | 95.30% | 98.60% | 96.80% | 88.40% | 97.10% | 92.40% | 84.90% | 95.80% | 89.80% |
Voter at Stage 1 | BT, ANN, SVM Vote Same Class | ANN, SVM Vote Same Class | BT, ANN Vote Same Class | BT, SVM Vote Same Class |
---|---|---|---|---|
Correct prediction | 11709 | 451 | 616 | 313 |
Wrong prediction | 107 | 199 | 27 | 59 |
Total | 11816 | 650 | 643 | 372 |
Stage 2 | Stage 3 | |||
---|---|---|---|---|
Classifier | BT | ANN | SVM | Voter |
MCA | 98.60% | 96.90% | 96.50% | 99.10% |
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Shivanna, D.B.; Stephan, T.; Al-Turjman, F.; Kolhar, M.; Alturjman, S. IoMT-Based Automated Diagnosis of Autoimmune Diseases Using MultiStage Classification Scheme for Sustainable Smart Cities. Sustainability 2022, 14, 13891. https://doi.org/10.3390/su142113891
Shivanna DB, Stephan T, Al-Turjman F, Kolhar M, Alturjman S. IoMT-Based Automated Diagnosis of Autoimmune Diseases Using MultiStage Classification Scheme for Sustainable Smart Cities. Sustainability. 2022; 14(21):13891. https://doi.org/10.3390/su142113891
Chicago/Turabian StyleShivanna, Divya Biligere, Thompson Stephan, Fadi Al-Turjman, Manjur Kolhar, and Sinem Alturjman. 2022. "IoMT-Based Automated Diagnosis of Autoimmune Diseases Using MultiStage Classification Scheme for Sustainable Smart Cities" Sustainability 14, no. 21: 13891. https://doi.org/10.3390/su142113891
APA StyleShivanna, D. B., Stephan, T., Al-Turjman, F., Kolhar, M., & Alturjman, S. (2022). IoMT-Based Automated Diagnosis of Autoimmune Diseases Using MultiStage Classification Scheme for Sustainable Smart Cities. Sustainability, 14(21), 13891. https://doi.org/10.3390/su142113891