A Systematic Review of the Factors Influencing the Estimation of Vegetation Aboveground Biomass Using Unmanned Aerial Systems
Abstract
:1. Introduction
2. Methods
- How well can structural data estimate vegetation AGB? Which structural metrics are best?
- How accurately can multispectral data predict vegetation AGB? Which multispectral indices perform the best?
- How well can RGB spectral data estimate vegetation AGB? Which RGB indices perform the best? How do RGB data compare to MS data? Is including RGB textural information useful?
- Does combining spectral and structural variables improve AGB estimation models beyond either data type alone?
- What other data combinations or types are useful?
- How do the study environment and data collection impact AGB estimation from UAS data?
- How do vegetation growth structure and phenology impact AGB estimation accuracy?
- How do data analysis methods impact AGB estimation accuracy?
3. Results and Discussion
3.1. Input Data
3.1.1. How Well Can Structural Data Estimate Vegetation AGB? Which Structural Metrics Are Best?
3.1.2. How Accurately Can Multispectral Data Predict Vegetation AGB? Which Multispectral Indices Perform the Best?
3.1.3. How Well Can RGB Spectral Data Estimate Vegetation AGB? Which RGB Indices Perform the Best? How do RGB Data Compare to MS Data? Is RGB Textural Information Useful?
3.1.4. Does Combining Spectral and Structural Variables Improve AGB Estimation Models Beyond Either Data Type Alone?
3.1.5. What Other Data Combinations or Types Are Useful?
3.2. Other Factors Influencing AGB Estimation
3.2.1. How do the Study Environment and Data Collection Impact AGB Estimation from UAS Data?
Data Collection
Environment and Weather Conditions
3.2.2. How do Vegetation Growth Structure and Phenology Impact AGB Estimation Accuracy?
Growth Stage
Growth Structure
3.2.3. How do Data Analysis Methods Impact AGB Estimation Accuracy?
Radiometric and Geometric Processing
Spatial and Temporal Resolution
Hierarchical Level of Analysis
Source of Terrain Model
Statistical Model Type
3.3. Future Directions of Research
4. Conclusions
- How well can structural data estimate vegetation AGB? Which structural metrics are best?
- How well can multispectral data predict vegetation AGB? Which multispectral indices perform the best?
- How well can RGB spectral data estimate vegetation AGB? Which RGB indices perform the best? How do RGB data compare to MS data?
- Does combining spectral and structural variables improve AGB estimation models beyond either data type alone?
- What other data combinations or types are useful?
- How do the study environment and data collection impact AGB estimation from UAS data?
- How do vegetation growth structure and phenology impact AGB estimation accuracy?
- How do data analysis methods impact AGB estimation accuracy?
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
Appendix A
Study Parameters | Data Collection Parameters | Data Analysis Parameters | Results | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species and Location | Ground Truth Data 1 | Sensor 2 | Flight Height | Overlap, Sidelap | GSD (cm/pixel) | Area Based? | Spectral Data | Structural Data | Texture Data | Other Data | Terrain Model Source | Best Statistical Method 3 | R2 | Top Variables | Study |
Corn, alfalfa, soybean, USA | Direct measurements of dry biomass | RGB | 200 m | unknown | 10 cm | Area-based | NGRDI | n/a | n/a | n/a | n/a | SLR | 0.39–0.88 | NGRDI | [60] |
Ryegrass crop, Japan | Direct measurements of dry biomass | 3-band MS | 100 m | 50% | 2 cm | Area-based | DN of each band | n/a | n/a | n/a | n/a | MLR | 0.84 | DN of R, G, NIR | [18] |
Cover crop, USA | Direct measurements of dry biomass | 4-band MS | 100 m | 70%, 80% | 15 cm | Area-based | 4 indices | n/a | n/a | n/a | n/a | SLR | 0.92 | NDVI and GNDVI | [11] |
Winter wheat crop, Germany | Direct measurements of dry biomass | 4-band MS | 25 m | 96%, 60% | 4 cm | Area-based | NDVI, REIP | n/a | n/a | n/a | n/a | SLR | 0.72–0.85 | NDVI, REIP | [24] |
Wheat crop, China | Direct measurements of dry biomass | 2-band MS | 1 m | Unknown | <1 cm | Area-based | NDVI, RVI | n/a | n/a | n/a | n/a | SLR | 0.62–0.66 | RVI, NDVI | [58] |
Wheat crop, Finland | Direct measurements of dry biomass | 42-band HS | 140 m | 78%, 67% | 20 cm | Area-based | All HS bands, NDVI | n/a | n/a | n/a | DTM from ALS data | KNN | 0.57–0.80 | All HS bands with correction | [61] |
Rice crop, China | Direct measurements of dry biomass | 4-band MS | 80 m | 70% | 8 cm | Area-based | 10 spectral indices | n/a | n/a | n/a | n/a | LME | 0.75–0.89 | All VIs | [62] |
Tallgrass prairie, USA | Direct measurements of dry biomass | 3-band MS | 5, 20, 50 m | Unknown | 1–9 cm | Area-based | NDVI | n/a | n/a | n/a | n/a | SLR | 0.86–0.94 | NDVI | [77] |
Coastal wetland, USA | Direct measurements of fresh and dry biomass | 5-band MS | 90 m | 75% | 6.1 cm | Area-based | 6 spectral indices | n/a | n/a | n/a | n/a | SLR | 0.36–0.71 | NDVI | [43] |
Winter wheat, China | Direct measurements of dry biomass | RGB | 50 m | Unknown | 1 cm | Area-based | 3 RGB bands, 6 RGB indices | n/a | 8 image textures | n/a | DTM interpolated from ground points | SWR, RF | 0.84 | All | [2] |
Rice crop, China | Direct measurements of dry biomass | 6-band MS | 100 m | unknown | 5 cm | Area-based | 8 spectral indices | n/a | 8 textures, NDTIs | n/a | n/a | SWR | 0.86 | 2 texture, 1 RGB VI | [26] |
Barley crop, Germany | Direct measurements of fresh and dry biomass | RGB | 50 m | >80% | <1 cm | Area-based | n/a | Mean height | n/a | n/a | Leaf-off DSM | SER | 0.81–0.82 | Mean height | [23] |
Rice crop, Germany | Direct measurements of fresh and dry biomass | RGB | 7-10 m | 95% | <1 cm | Area-based | n/a | Mean plot height | n/a | n/a | DTM from interpolating plant-free point | SLR | 0.68–0.81 | Mean height | [74] |
Black oat crop, Brazil | Direct measurements of fresh and dry biomass | RGB | 25 m | 90% | <2 cm | Area-based | n/a | Mean plot height | n/a | n/a | Leaf-off DTM | SER | 0.69–0.94 | Mean height | [75] |
Temperate grasslands, Germany | Direct measurements of dry biomass | RGB | 20 m | 80% | <1 cm | Area-based | n/a | Mean plot height | n/a | n/a | DTM from raster ground point classification | RMAR | 0.62–0.81 | Mean height | [19] |
Deciduous forest, USA | Allometric measurements of tree biomass | RGB | 80m | 80% | 3.4 cm | Area-based | n/a | Mean height | n/a | n/a | LiDAR DTM | SLR | 0.80 | Mean height | [55] |
Coniferous forest, China | Allometric measurements of tree biomass | RGB | 400 m | 80%, 60% | 5 cm | Individual trees | n/a | Tree height | n/a | n/a | DTM from point cloud classification | SER | 0.98 | Max height | [1] |
Pine tree plantation, Portugal | Allometric measurements of tree biomass | RGB | 170m | 80%, 75% | 6 cm | Individual trees | n/a | Tree height, crown area, diameter | n/a | n/a | DTM from point cloud classification | SER | 0.79–0.84 | All | [50] |
Tropical forest, Costa Rica | Allometric measurements of tree biomass | RGB | 30–40 m | 90%, 75% | ~10 cm | Area-based | n/a | Canopy height, proportion, roughness, openness | n/a | n/a | DTMs from point cloud and ground-based GPS interpolation | SLR | 0.81–0.83 | Median height | [48] |
Temperate grasslands, China | Direct measurements of dry biomass | RGB | 3m, 20m | 70% | ~ 1 cm | Area-based | n/a | 5 canopy height metrics | n/a | n/a | DTM from point cloud ground point classification | SLogR, SLR | 0.76–0.78 | Mean height, median height | [65] |
Temperate grasslands, Germany | Direct measurements of fresh and dry biomass | RGB | 25 m | 80% | ~1 cm | Area-based | n/a | 10 canopy height metrics | n/a | n/a | DTM from TLS data | SLR | 0.0–0.62 | 75th percentile of height | [63] |
Eggplant, tomato and cabbage crops, India | Direct measurements of fresh biomass | RGB | 20 m | 80% | <1 cm | Area-based | n/a | 14 canopy height metrics | n/a | n/a | DTM from point cloud ground point classification | RF | 0.88–0.95 | All | [34] |
Mixed forest, Japan | Allometric measurements of tree biomass | RGB | 650 m | 85% | 14 cm | Area-based | n/a | 12 point cloud and 4 CHM metrics | n/a | n/a | LiDAR DTM | RF | 0.87–0.94 | 5 height metrics | [28] |
Onion crop, Spain | Direct measurements of dry leaf and bulb biomass | RGB | 44 m | 60%, 40% | 1 cm | Area-based | n/a | 3 canopy height, volume and cover metrics | n/a | n/a | Bare-earth DTM | SER | 0.76–0.95 | Canopy volume | [22] |
Rye and timothy pastures, Norway | Direct measurements of dry biomass | RGB | 30 m | 90%, 60% | <2 cm | Area-based | n/a | Mean plot volume | n/a | n/a | None | SLR | 0.54 | Volume | [64] |
Boreal forest, Alaska | Allometric measurements of tree biomass | RGB | 100m | 90% | 1.9–2.7 cm | Individual tree crowns and plot level | n/a | Tree crown volume | n/a | n/a | DTM from point cloud classification | OLSR | 0.74–0.92 | Canopy volume | [8] |
Tropical woodland, Malawi | Allometric measurements of tree biomass | RGB, 2-band MS | 286–487 m | 90%, 70–80% | 10–15 cm | Area-based | 15 RGB and 15 MS indices per 6 bands | 86 canopy height or canopy density features | n/a | n/a | DTM derived from point cloud ground point classification | MLR | 0.76 | 4 height metrics | [57] |
Tropical forests, Myanmar | Allometric measurements of tree biomass | RGB | 91–96 m | 82% | <4 cm | Area-based | 4 RGB indices of spectral change | 11 height variables, 3 disturbed area variables | n/a | n/a | None | Type 1 Tobit | 0.77 | 2 height metrics | [49] |
Tropical woodland, Malawi | Allometric measurements of biomass | RGB | 325 m | 80%, 90% | ~5 cm | Area-based | 15 spectral variables per RGB band | 15 canopy height metrics, 10 canopy density metrics | n/a | n/a | DTMs derived from ground point classification or SRTM data | MLR | 0.67 | 2 height, 1 spectral metric | [30] |
Aquatic plants, China | Direct measurements of dry biomass | RGB | 50m | 60%, 80% | 10 cm | Area-based | 7 RGB indices | 3 height metrics | n/a | n/a | Winter DTM | SWR | 0.84 | 2 spectral, 3 height metrics | [9] |
Cover crop, Switzerland | Direct measurements of dry biomass | RGB, 5-band MS | 50 m, 30 m | >75%, >65% | <10 cm | Area-based | 1 RGB index, 2 MS indices | Plant height and canopy cover | n/a | n/a | GPS measurements taken on the ground | SLR | 0.74 | 90th percentile of height | [21] |
Rice crop, China | Direct measurements of dry biomass | RGB, 25-band MS | 25 m | 60%, 75% | 1–5 cm | Area-based | 9 spectral indices | Mean crop height | n/a | n/a | DTM from point cloud ground point classification | RF | 0.90 | Height, 7 RGB VIs, 3 MS VIs | [5] |
Winter wheat, China | Direct measurements of dry biomass | RGB, 125-band HS | 50 m | 1–2.5 cm | Area-based | 3 RGB bands, 4 HS bands, 9 RGB indices, 8 HS indices | Crop height | n/a | n/a | DTM interpolated from manual ground point classification | RF | 0.96 | All RGB data | [20] | |
Winter wheat, Germany | Direct measurements of fresh and dry biomass | RGB | 50 m | 60%, 60% | ~1 cm | Area-based | 5 spectral variables | Plant height, crop area | n/a | n/a | DTM from leaf-off flight | MLR | 0.70–0.94 | 2 principal components | [25] |
Wheat crop, China | Direct measurements of dry biomass | RGB | 30 m | 80%, 60% | 1.66 cm | Area-based | 10 spectral indices | 8 height metrics | n/a | n/a | Leaf-off DTM | RF | 0.76 | All | [12] |
Maize crop, China | Direct measurements of dry biomass | RGB, 4-band MS | 60 m | 80%, 75% | <1 cm | Area-based | 11 spectral indices | 3 canopy metrics | n/a | n/a | DTM interpolated from un-vegetated points | RF | 0.94 | 3 structural, 2 RGB VI, 1 MS VI metrics | [16] |
Maize crop, China | Direct measurements of dry biomass | RGB | 150 m | 80%, 40% | 2 cm | Area-based | 8 spectral indices | 4 height metrics | n/a | n/a | DTM interpolated from ALS | RF | 0.78 | 3 structural, 2 RGB metrics | [15] |
Maize crop, China | Direct measurements of fresh and dry biomass | RGB | 30 m | 90% | <1 cm | Area-based | 6 spectral variables | 6 canopy height variables | n/a | n/a | None | MLR | 0.85 | 3 RGB, 1 structural metric | [4] |
Barley crop, Germany | Direct measurements of dry biomass | RGB | 50 m | Unknown | 1 cm | Area-based | 3 RGB indices | Mean crop height | n/a | VI*Height | Leaf-off DTM | MNLR | 0.84 | 1 structural, 1 spectral, 4 structural times spectral metrics | [66] |
Poplar plantation, Spain | Allometric measurements of tree biomass | RGB, 5-band MS | 100 m | 80%, 60% | 4–6 cm | Individual trees | NDVI | Tree height | n/a | NDVI* Height | None | MLR | 0.54 | NDVI * Height | [67] |
Winter wheat, China | Direct measurements of dry biomass | 125-band HS | 50 m | Unknown | 1 cm | Area-based | 5 HS bands, 14 HS VIs | Plant height | n/a | VI*Height | DTM interpolated from identified ground points | PLSR | 0.78 | 8 structural times spectral metrics | [6] |
Grassland, Germany | Direct measurements of dry biomass | RGB | 13–16 m and 60 m | Unknown | 1–2 cm | Area-based | RGBVI | Mean plot height | n/a | GrassI (height + RGBVI* 0.25) | Leaf-off DTM | SLR | 0.64 | Mean plot height | [68] |
Soybean crop, USA | Direct measurements of dry biomass | RGB | 30m | 90%, 90% | <1 cm | Area-based | 3 RGB bands, 17 RGB indices | 6 canopy height metrics, canopy volume | n/a | VI-weighted canopy volume | Winter DTM | SWR | 0.91 | All | [3] |
Rice crop, China | Direct measurements of dry biomass | RGB, 12-band MS | 120 m | Unknown | 6.5 | Area-based | 11 MS indices + band reflectance of 12 bands | 17 TIN-derived metrics | n/a | Growing degree days (GDD) | Winter DTM | RF | 0.92 | All spectral, structural, GDD metrics | [13] |
Ryegrass crop, Belgium | Direct measurements of dry biomass | RGB | 30 m | 80% | <2 cm | Area-based | 10 spectral indices | 7 canopy height metrics | n/a | GDD, ΔGDD between cuts | DTMs from interpolation of ground points and from leaf-off flights | MLR | 0.81 | 2 structural, 1 spectral, 2 GDD metrics | [69] |
Maize crop, Belgium | Direct measurements of dry biomass | RGB | 50 m | 80% | ≤ 5 cm | Area-based | 5 spectral indices | Median plot height | n/a | Ground-based AGB estimate | LiDAR DTM | PLSR | 0.82 | All spectral metrics, mean height, field-measured AGB | [27] |
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Type | Variable | Used by |
---|---|---|
Height | Mean height | [3,9,12,13,15,16,19,20,21,23,25,28,30,34,48,49,50,57,58,63,65,67,68,69,74,75,76] |
Maximum height | [1,3,4,13,28,30,34,48,57,63,65,69] | |
Minimum height | [3,28,34,48,57,63,65,69] | |
Median height | [12,21,27,48,63,65,69] | |
Mode of height | [57] | |
Count of height | [63] | |
Standard deviation of height | [3,9,12,13,15,28,30,34,48,57,63,65,69] | |
Coefficient of variation of height | [3,9,12,13,15,28,30,34,48,57,69] | |
Variance of height | [57] | |
Skewness of height | [30,34,57] | |
Kurtosis of height | [30,34,57] | |
Entropy of height | [13] | |
Relief of height | [13,34] | |
Height percentile(s) | [4,13,15,21,30,34,49,57,63,69] | |
Area & Density | Canopy point density | [28,30,57] |
Proportion of points > mean height relative to total number of points | [28,57] | |
Proportion of points > mode height relative to total number of points | [57] | |
Crown/vegetation area (canopy cover) | [3,21,50] | |
Canopy relief ratio | [16,57] | |
Crown isle—proportion of site where canopy has height greater than 2/3 of the 99th percentile of all heights | [48] | |
Canopy openness—proportion of site area <2 m in height | [48] | |
Canopy roughness—average of SD of each pixel from mean CHM | [48] | |
Volume | Canopy/crown volume | [3,8,16,22,25,64] |
VI-weighted canopy volume | [3] | |
Change-based | Amount of change in DSM before and after plant removal | [49] |
Other | Height*Spectral (various indices) | [6,66,67] |
GrassI (RGBVI + CHM) | [68] | |
TIN-based structure, area, slope | [13] |
Index | Formula | Used by |
---|---|---|
NDSI | (λ1 − λ2)/(λ2 + λ2) where 1 and 2 are any bands | [5] |
MNDSI | (λ1 − λ2)/(λ1 − λ2) where 1, 2 and 3 are any bands | [5] |
SR | (λ1/λ2) where 1 and 2 are any bands | [5,25] |
NDVI | (NIR − R)/(NIR + R) | [6,11,13,16,20,26,43,61,67,76,77,78] |
GNDVI | (NIR − G)/(NIR + G) | [13,16,26,43,62] |
NDRE | (λ800 − λ720)/(λ800 + λ720) | [13,16,43,62] |
SR | λ800/λ700 | [13] |
NPCI | (λ670 − λ460)/(λ670 + λ460) | [20] |
TVI | 0.5 * [120 * (λ800 − λ550) − 200 * (λ670 − λ550) | [6,11,13] |
EVI | 2.5 * (λ800 − λ670)/(λ800 + 6 * λ670 − 7.5 * λ490 + 1) | [6,13,43] |
EVI2 | 2.5 * (λ800 − λ680)/(λ800 + 2.4 * λ680 + 1) | [6,20] |
GI | λ550/λ680 | [6] |
RDVI | (λ798 − λ670)/sqrt(λ798 + λ670) | [13] |
CI red edge | (λ780 − Λ710) − 1 OR (NIR/RE) − 1 | [13,16,26,43,62] |
CI green | (λ780 − λ550) − 1 OR (NIR/green) − 1 | [13,16,43] |
DATT | (λ800 − λ720)/(λ800 − λ680) | [26] |
LCI | (λ850 − λ710)/(λ850 − λ680) | [13,20] |
MCARI | [(λ700 − λ670) − 0.2(λ700 − λ550)] * (λ700/λ670) | [13,20] |
MCARI1 | 1.2(2.5(λ790 − λ660) − 1.3(λ790 − λ560)) | [62] |
SPVI | 0.4 * (3.7(λ800 − λ670) − 1.2 * |λ530 − λ670|) | [20] |
OSAVI | 1.16(λ800 − λ670)/(λ800 + λ670 + 0.16) | [6,20,26,62] |
REIP | 700 + 40 * (((λ667 + λ782)/2) − λ702)/(λ738 − λ702)) | [21,24] |
MTVI | 1.2[1.2(λ800 − λ550) − (2.5(λ670 − λ550)] | [6,62] |
MTVI2 | 1.5[1.2(λ800 − λ550) − 2.5(λ670 − λ550)]/sqrt[(2 * λ800 + 1)2 − (6 * λ800 − (5 * λ670)1/2) − 0.5]1/2 | [6,26,62] |
RVI | λ800/λ670 | [6,16] |
DVI1-3 | λ800 − λ680; λ750 − λ680; λ550 − λ680 | [6] |
WDRVI | (0.1 * λ800 − λ680)/(0.1 * λ800 + λ680) | [6,16] |
CVI | NIR * (R/G2) | [16] |
BGI | λ460/λ560 | [20] |
DATT | (λ790 − λ735)/(λ790 − λ660) | [62] |
MSAVI | (2 * λ800 + 1 − sqrt(2 * λ800 + 1)2) − 8 * (λ800 − λ670) | [6,62] |
Index | Formula1 | Used by |
---|---|---|
GRVI/NGRDI | (G − R)/(G + R) | [2,3,4,5,9,11,12,16,20,21,26,27,33,60] |
ExG | 2 × G − R − B | [3,4,9,12,15,16,25,69] |
GLA/GLI/VDVI | (2 * G − R − B)/(2 * G + R + B) | [3,5,9,12,15,16] |
MGRVI | G2 − R2/G2 + R2 | [5,12] |
ExB | 1.4 * B − G/(G + R + B) | [3,12] |
ExR | 1.4 × R − B or 1.4 * (R − G)/(G + R + B) | [12,15] |
ExGR | ExG index − ExR index | [3,4,9,12,15,69] |
Red Ratio | R/(R + G + B) | [2,3,20] |
Blue Ratio | B/(R + G + B) | [2,3,20] |
Green Ratio | G/(R + G + B) | [2,3,20] |
VARI | (G − R)/(G + R − B) | [2,3,5,12,16,20,26,27] |
ExR | 1.4 * (R − G) | [2,3,20] |
NRBI | (R − B)/(R + B) | [27] |
NGBI | (G − B)/(G + B) | [27] |
VEG | G/(RaB(1−a)) where a = 0.667 | [3,4,5,9,15] |
WI | (G − B)/(R − G) | [3,15] |
CIVE | 0.441 * R − 0.881 * G + 0.385 * B + 18.78745 | [3,4,9,15] |
COM | 0.25 * ExG + 0.3 * ExGR + 0.33 * CIVE + 0.12 * VEG | [3,4,9,15] |
TGI | G − (0.39 * R) − (0.61 * B) | [27] |
RGBVI | (G2 − B * R)/(G2 + B * R) | [12,68] |
IKAW | (R − B)/(R + B) | [3,12] |
GRRI | G/R | [3,5] |
GBRI | G/B | [3] |
RBRI | R/B | [3] |
BRRI | B/R | [20] |
BGRI | B/G | [20] |
RGRI | R/G | [20] |
INT | (R + G + B)/3 | [3] |
NDI | (red ratio index − green ratio index)/ (red ratio index + green ratio index + 0.01) | [3] |
MVARI | (G − B)/(B + R − B) | [5] |
IPCA | 0.994 * |R − B| + 0.961 * |G − B| + 0.914 * |G − R| | [3] |
Δ Reflectance | Change in reflectance measured at two time periods | [49] |
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G. Poley, L.; J. McDermid, G. A Systematic Review of the Factors Influencing the Estimation of Vegetation Aboveground Biomass Using Unmanned Aerial Systems. Remote Sens. 2020, 12, 1052. https://doi.org/10.3390/rs12071052
G. Poley L, J. McDermid G. A Systematic Review of the Factors Influencing the Estimation of Vegetation Aboveground Biomass Using Unmanned Aerial Systems. Remote Sensing. 2020; 12(7):1052. https://doi.org/10.3390/rs12071052
Chicago/Turabian StyleG. Poley, Lucy, and Gregory J. McDermid. 2020. "A Systematic Review of the Factors Influencing the Estimation of Vegetation Aboveground Biomass Using Unmanned Aerial Systems" Remote Sensing 12, no. 7: 1052. https://doi.org/10.3390/rs12071052
APA StyleG. Poley, L., & J. McDermid, G. (2020). A Systematic Review of the Factors Influencing the Estimation of Vegetation Aboveground Biomass Using Unmanned Aerial Systems. Remote Sensing, 12(7), 1052. https://doi.org/10.3390/rs12071052