How Many Reindeer? UAV Surveys as an Alternative to Helicopter or Ground Surveys for Estimating Population Abundance in Open Landscapes
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Area and Species
2.2. Field Data Collection
2.2.1. Ground Distance Sampling Survey
2.2.2. UAV Survey
2.2.3. Helicopter Survey
2.2.4. Independent Total Counts Survey
2.3. Data Analyses
2.3.1. Ground Distance Sampling DSM
2.3.2. UAV DSM
2.3.3. Independent Total Counts DSM
2.4. Comparison of Survey Methods
3. Results
3.1. Field Survey Characteristics
3.2. Detection of Reindeer
3.3. Reindeer Densities and Spatial Projections
4. Discussion
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Appendix A. Independent Total Counts from Adventdalen—Background Data and Results
Statistical Analyses
Hurdle Density Model Adventdalen | |||
---|---|---|---|
β ± SE | p | ||
Count model | Intercept | −1.04 ± 0.57 | 0.07 |
NDVI * | 0.003 ± 0.0009 | 0.002 | |
P/A model | Intercept | −4.59 ± 0.33 | <0.05 |
NDVI * | 0.004 ± 0.0005 | 0.02 |
Appendix B. Model Selection and Detection Curve for Estimating Svalbard Reindeer Abundance by Ground Distance Sampling
Model | Key | AIC | ΔAIC |
---|---|---|---|
~weather | hr | 657.893 | 0 |
~1 | hr | 661.477 | 3.584 |
~weather | hn | 663.627 | 5.734 |
~1 | hn | 665.857 | 7.964 |
Ground DS Survey Sassendalen | Model by Le Moullec et al. [22] | |||
---|---|---|---|---|
β ± SE | p | β ± SE | p | |
Intercept | −19.25 ± 2.05 | <0.001 | −13.95 ± 0.38 | <0.001 |
NDVI * | 0.012 ± 0.003 | <0.001 | 2.65 × 10−3 ± 0.76 × 10−3 | <0.001 |
Appendix C. Protocol for Counting Reindeer from UAV Imagery
Appendix C.1. Counting Svalbard Reindeer from Drone Imagery—Instructions to Observers (Full Version Can Be Available from the Authors upon Request)
Background
Appendix C.2. Download Software and Get Started!
- ▪
- Save and extract the ‘Reindeer_counting_drone_imagery.zip’ to your computer or hard disk. The folder and metadata require about 4 GB of space so make sure you have enough.
Appendix C.3. Set up DotDotGoose Software
- ▪
- Click and open the dotdotgoose.exe file in the ‘Reindeer_counting_drone_imagery’ folder
- ▪
- Click on ‘Load’ in the bottom left corner. Find the imagery folder “drone_imagery_SAS_2021” and select the point file ‘template_reindeer_counting.pnt’
- ▪
- In Survey Id at the top left panel: put your first name and last name with underscore, e.g., ole_olesen. This will create a column in the metadata with your name.
- ▪
- Click the Save button and save a point file with your own name (e.g., ole_olesen.pnt) into the same folder as the drone imagery ‘drone_imagery_SAS_2021’. It is important that it is the same folder as the imagery—if not the save will not work!
- ▪
- If you need to close the programme and finish at another time, you can open your point file in the DotDotGoose software by locating the file and click Import.
Appendix C.4. Reindeer Detection and Assigning Objects to Categories
Appendix C.4.1. Time Tracking
- ▪
- We would like to know how long it takes for each observer to scan through each transect line. The name of each jpeg file starts with the transect number (e.g., Line_1, Line_2).
- ▪
- When you are about to start on the first image of the transect (e.g., Line_1_tile_100.jpeg) write down the time in ‘time_start’ from the Custom Fields (right side panel) from your computer clock (e.g., 09:54).
- ▪
- When you have scanned all images in the transect (e.g., last image is Line_1_tile_99.jpeg) write down the time in time_stop (e.g., 11:00) on this last image of Line_1.
- ▪
- Do this for every transect line (Line_1 to Line_6) so we get the start and end time for each transect. Please try to complete every transect line in one go, but if you need to take breaks write down the end time and start time as well so breaks can be subtracted.
- ▪
- Remember to save frequently and when you take breaks.
Appendix C.4.2. Reindeer Scanning Method
- ▪
- For each image, scan the full-scale image quickly from grid to grid with your eyes (see example below). It might be useful to move your mouse as a guide.
- ▪
- If you cannot find an object of interest, go to the next image by pressing the down arrow key on your keyboard.
- ▪
- If you want to go back to any previous images use the up-arrow key or double-click on a specific photo in the Summary table.
- ▪
- If you do find an object of interest, zoom in on it to check if it is a reindeer or carcass by scrolling your mouse or use the zoom buttons in the right bottom corner (you can also drag the image up, down, and sideways by clicking and holding the mouse).
- ▪
- To mark a reindeer or carcass, you click on the category you want to assign on the left side panel (see left image below). Press the Ctrl key while you click on the object in the image. A dot will be created over the reindeer.
- ▪
- You can double check that the right category was assigned to the object for that image by looking at the Summary table on the left panel (see right image below).
- ▪
- NB! If you accidentally make a point or assign wrong category and need to remove it from the image, press and hold the Shift key on your keyboard, then left click and drag the mouse to draw a box around the points you’d like to delete. A red circle around your point will show up. Press the Delete key to remove the point.
Appendix D. UAV Density Model for Estimating Reindeer Abundance with Hurdle Density Model
UAV Density Models | ||||||
---|---|---|---|---|---|---|
β ± SE | p | AIC | ΔAIC | |||
Hurdle 1 | Count model | Intercept | −2.61 ± 82.8 | 0.975 | 182.50 | 0 |
NDVI | −9.59 ± 7.15 | 0.180 | ||||
P/A model | Intercept | −7.00 ± 1.40 | <0.05 | |||
NDVI | 6.67 ± 2.15 | 0.002 | ||||
Hurdle 2 | Count model | Intercept | 114.19 ± −0.08 | 0.93 | 182.54 | 0.04 |
Log(theta) | −10.16 ± 114.20 | 0.93 | ||||
P/A model | Intercept | −5.82 ± 1.36 | <0.05 | |||
NDVI | 5.19 ± 2.080 | 0.012 |
Appendix E. Detection Probability from UAV Imagery
- Binomial linear mixed effect model (GLMER)
- Five separate models with observer id as a random effect and each of the fixed effects median luminance, mean red, green, and blue channels per image. We only show the predicted effect plots for the fixed effects with a statistical significance (p > 0.05) below (intercepts and standard error in results section).
- Response variable: Reindeer seen (1) or reindeer not seen (0) by observers
- Sample size of reindeer n = 234
- Poisson GLMER.
- Five models with observer id as a random effect and each of the fixed effects median luminance, mean red, green, and blue channels per image (intercepts and standard error in results section). Below, we only show the predicted effect plots for the fixed effects with a statistical significance (p > 0.05)
- Response variable: Number of reindeer observed in an image
- Sample size of reindeer n = 179
Fixed Effect | Random Effect | Coefficient | Fixed Effect (Β ± Se) | Random Effect | AIC | |
---|---|---|---|---|---|---|
P/A model | ~Greenness index | observer ID | Intercept Covariate | −1.36 ± 0.48 3.57 ± 0.92 | 0.04, 0.20 | 301.89 |
~mean blue channel | observer ID | Intercept Covariate | 1.90 ± 0.73 −3.06 ± 1.48 | 0.03, 0.17 | 315.10 | |
~mean green channel | observer ID | Intercept Covariate | 1.63 ± 0.85 −2.25 ± 1.58 | 0.03, 0.17 | 317.43 | |
~mean red channel | observer ID | Intercept Covariate | 1.35 ± 0.89 −1.67 ± 1.61 | 0.03, 0.16 | 318.40 | |
~median luminance | observer ID | Intercept Covariate | 1.07 ± 0.68 −1.22 ± 1.28 | 0.03, 0.16 | 318.57 | |
Count model | ~mean red channel | observer ID | Intercept Covariate | −3.91 ± 0.76 −3.91 ± 0.76 | 0.02, 0.13 | 709.63 |
~mean green channel | observer ID | Intercept Covariate | 3.01 ± 0.38 −3.62 ± 0.72 | 0.02, 0.13 | 712.19 | |
~median luminance | observer ID | Intercept Covariate | −2.66 ± 0.57 −2.66 ± 0.57 | 0.02, 0.14 | 714.17 | |
~mean blue channel | observer ID | Intercept Covariate | −2.41 ± 0.58 −2.41 ± 0.58 | 0.02, 0.13 | 725.01 | |
~Greenness index | observer ID | Intercept covariate | 1.40 ± 0.14 −0.52 ± 0.22 | 0.03, 0.18 | 740.84 |
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Estimated Abundance | ||||
---|---|---|---|---|
Survey Method | UAV Sampling Area (16.2 km2) | Ground DS Sampling Area (42.7 km2) | Valley Scale (161.7 km2) | Helicopter Surveyed Area (286.2 km2) |
Ground DS | 164 ± 43 (CV = 0.26) | 351 ± 84 (CV = 0.24) | 920 ± 202 (CV = 0.22) | - |
UAV | 32 ± 9 (CV = 0.29) | 77 ± 15 (CV = 0.19) | 243 ± 26 (CV = 0.11) | - |
Helicopter | - | - | - | 1559 * |
Independent ground TC | 131 ± 32 (CV = 0.24) | 311 ± 48 (CV = 0.15) | 958 ± 82 (CV = 0.09) | 1515 ± 101 (CV = 0.07) |
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Paulsen, I.M.G.; Pedersen, Å.Ø.; Hann, R.; Blanchet, M.-A.; Eischeid, I.; van Hazendonk, C.; Ravolainen, V.T.; Stien, A.; Le Moullec, M. How Many Reindeer? UAV Surveys as an Alternative to Helicopter or Ground Surveys for Estimating Population Abundance in Open Landscapes. Remote Sens. 2023, 15, 9. https://doi.org/10.3390/rs15010009
Paulsen IMG, Pedersen ÅØ, Hann R, Blanchet M-A, Eischeid I, van Hazendonk C, Ravolainen VT, Stien A, Le Moullec M. How Many Reindeer? UAV Surveys as an Alternative to Helicopter or Ground Surveys for Estimating Population Abundance in Open Landscapes. Remote Sensing. 2023; 15(1):9. https://doi.org/10.3390/rs15010009
Chicago/Turabian StylePaulsen, Ingrid Marie Garfelt, Åshild Ønvik Pedersen, Richard Hann, Marie-Anne Blanchet, Isabell Eischeid, Charlotte van Hazendonk, Virve Tuulia Ravolainen, Audun Stien, and Mathilde Le Moullec. 2023. "How Many Reindeer? UAV Surveys as an Alternative to Helicopter or Ground Surveys for Estimating Population Abundance in Open Landscapes" Remote Sensing 15, no. 1: 9. https://doi.org/10.3390/rs15010009
APA StylePaulsen, I. M. G., Pedersen, Å. Ø., Hann, R., Blanchet, M. -A., Eischeid, I., van Hazendonk, C., Ravolainen, V. T., Stien, A., & Le Moullec, M. (2023). How Many Reindeer? UAV Surveys as an Alternative to Helicopter or Ground Surveys for Estimating Population Abundance in Open Landscapes. Remote Sensing, 15(1), 9. https://doi.org/10.3390/rs15010009