Use of Droplet Digital Polymerase Chain Reaction to Identify Biomarkers for Differentiation of Benign and Malignant Renal Masses
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Design
2.2. Plasma Samples
2.3. RNA Isolation
2.4. PCR Analyses
2.4.1. cDNA Synthesis
2.4.2. ddPCR
2.4.3. Conventional Real-Time PCR (RT-PCR)
2.4.4. Selection of Normalizers
2.4.5. Limit of Quantification
2.5. Statistical Analyses
3. Results
3.1. Study Cohort
3.2. Candidate Biomarkers
3.3. PCR
3.3.1. Benign Versus RCC
3.3.2. Subgroup Comparisons
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Clinicopathologic Findings | Clear Cell n = 27 | Papillary n = 17 | Benign n = 9 | p Value |
---|---|---|---|---|
Stage/type | ||||
pT1-pT2 | 14 | 15 | - | |
pT3-pT4 | 13 | 2 | - | |
AML | - | - | 7 | |
other | - | - | 2 | |
Sex | 0.743 | |||
Female | 11 (41) | 5 (29) | 4 (44) | |
Male | 16 (59) | 12 (71) | 5 (56) | |
Age at diagnosis | 60 (53–68) | 66 (57–73) | 51 (42–59) | 0.013 |
BMI at surgery | 29.2 (25.2–34.3) | 27.5 (24.2–32.3) | 29.8 (24.7–32.3) | 0.773 |
Tumor size, cm | 6.3 (3.4–9.0) | 3.1 (2.6–4.9) | 2.6 (1.7–3.2) | 0.009 |
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Hayden, J.P.; Wiggins, A.; Sullivan, T.; Kalantzakos, T.; Hooper, K.; Moinzadeh, A.; Rieger-Christ, K. Use of Droplet Digital Polymerase Chain Reaction to Identify Biomarkers for Differentiation of Benign and Malignant Renal Masses. Cancers 2024, 16, 787. https://doi.org/10.3390/cancers16040787
Hayden JP, Wiggins A, Sullivan T, Kalantzakos T, Hooper K, Moinzadeh A, Rieger-Christ K. Use of Droplet Digital Polymerase Chain Reaction to Identify Biomarkers for Differentiation of Benign and Malignant Renal Masses. Cancers. 2024; 16(4):787. https://doi.org/10.3390/cancers16040787
Chicago/Turabian StyleHayden, Joshua P., Adam Wiggins, Travis Sullivan, Thomas Kalantzakos, Kailey Hooper, Alireza Moinzadeh, and Kimberly Rieger-Christ. 2024. "Use of Droplet Digital Polymerase Chain Reaction to Identify Biomarkers for Differentiation of Benign and Malignant Renal Masses" Cancers 16, no. 4: 787. https://doi.org/10.3390/cancers16040787
APA StyleHayden, J. P., Wiggins, A., Sullivan, T., Kalantzakos, T., Hooper, K., Moinzadeh, A., & Rieger-Christ, K. (2024). Use of Droplet Digital Polymerase Chain Reaction to Identify Biomarkers for Differentiation of Benign and Malignant Renal Masses. Cancers, 16(4), 787. https://doi.org/10.3390/cancers16040787