Genetic Characteristics and Phenotype of Korean Patients with Stickler Syndrome: A Korean Multicenter Analysis Report No. 1
Abstract
:1. Introduction
2. Materials and Methods
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Total (n = 37) | Stickler Syndrome Type 1 (n = 30) | Stickler Syndrome Type 2 (n = 7) | |
---|---|---|---|
Male:Female | 17:20 | 15:15 | 2:5 |
Mean (range) age at first visit (yrs) | 19.6 (0.25–56) | 18.7 (0.25–56) | 23.4 (0.25–56) |
Mean (range) follow-up duration (yrs) | 5.2 (0–19) | 5.6 (0–19) | 3.4 (0–12) |
Associated systemic features (%) | |||
Hearing difficulties † | 12 (32.4) | 9 (30.0) | 3 (42.9) |
Orofacial abnormalities | 17 (45.9) | 14 (46.7) | 3 (42.9) |
Cleft palate | 14 (37.8) | 12 (40.0) | 2 (28.6) |
Others ‡ | 4 (10.8) | 3 (10.0) | 1 (14.3) |
Skeletal abnormalities | 13 (35.1) | 13 (43.3) | 0 (0) |
Spondyloepiphyseal dysplasia | 5 (13.5) | 5 (16.7) | 0 (0) |
Others * | 11 (29.7) | 11 (36.7) | 0 (0) |
ID | Family | Gene Symbol | Exon/Intron | Nucleotide Change | Protein Change | Variant Type | ACMG Classification | References |
---|---|---|---|---|---|---|---|---|
1 | A | COL2A1 | Ex42 | c.2862C>T | p.(Gly954=) | Sn | LPV | Richards et al. [9] |
2 | B | COL2A1 | Ex40 | c.2678dup | p.(Ala895Serfs*49) | F | PV | Hoornaert et al. [24] Barat-Houari et al. [25] Yoon et al. [15] |
3 | C | COL2A1 | IVS47 | c.3327+1G>C | p.(?) | S | LPV | Yoon et al. [15] |
4 | C | COL2A1 | IVS47 | c.3327+1G>C | p.(?) | S | LPV | Yoon et al. [15] |
5 | D | COL2A1 | Ex31 | c.2003del | p.(Pro668Leufs*120) | F | PV | Novel |
6 | D | COL2A1 | Ex31 | c.2003del | p.(Pro668Leufs*120) | F | PV | Novel |
7 | D | COL2A1 | Ex31 | c.2003del | p.(Pro668Leufs*120) | F | PV | Novel |
8 | E | COL2A1 | Ex51 | c.3867C>A | p.(Cys1289*) | N | PV | Novel |
9 | E | COL2A1 | Ex51 | c.3867C>A | p.(Cys1289*) | N | PV | Novel |
10 | F | COL2A1 | Ex52 | c.4044G>C | p.(Trp1348Cys) | M | VUS | Novel |
11 | G | COL11A1 | Ex49 | c.3703G>A | p.(Ala1235Thr) | M | VUS | Novel |
12 | G | COL11A1 | Ex49 | c.3703G>A | p.(Ala1235Thr) | M | VUS | Novel |
13 | H | COL11A1 | IVS15 | c.1630-2delA | p.(?) | S | LPV | Martin et al. [26] |
14 | H | COL11A1 | IVS15 | c.1630-2delA | p.(?) | S | LPV | Martin et al. [26] |
15 | I | COL2A1 | IVS40 | c.2680-3C>G | p.(?) | I | VUS | Novel |
16 | J | COL2A1 | Ex42 | c.2862C>T | p.(Gly954=) | Sn | LPV | Richards et al. [9] |
17 | K | COL2A1 | IVS45 | c.3165+1G>A | p.(?) | S | VUS | Novel |
18 | L | COL2A1 | IVS13 | c.870+1G>A | p.(?) | S | LPV | Richards et al. [9] |
19 | M | COL2A1 | Ex9 | c.625C>T | p.(Arg209*) | N | PV | Ahmad et al. [27] |
20 | N | COL2A1 | Ex51 | c.3598G>C | p.(Gly1200Arg) | M | LPV | Novel |
21 | O | COL2A1 | Ex48 | c.3394del | p.(His1132Thrfs*95) | F | LPV | Novel |
22 | P | COL2A1 | Ex28 | c.1844del | p.(Gly615Alafs*14) | F | LPV | Novel |
23 | Q | COL2A1 | Ex26 | c.1693C>T | p.(Arg565Cys) | M | LPV | Richards et al. [28], Sun et al. [29], Wang et al. [30], Zhou et al. [31] |
24 | Q | COL2A1 | Ex26 | c.1693C>T | p.(Arg565Cys) | M | LPV | Richards et al. [28], Sun et al. [29], Wang et al. [30], Zhou et al. [31] |
25 | Q | COL2A1 | Ex26 | c.1693C>T | p.(Arg565Cys) | M | LPV | Richards et al. [28], Sun et al. [29], Wang et al. [30], Zhou et al. [31] |
26 | Q | COL2A1 | Ex26 | c.1693C>T | p.(Arg565Cys) | M | LPV | Richards et al. [28], Sun et al. [29], Wang et al. [30], Zhou et al. [31] |
27 | Q | COL2A1 | Ex26 | c.1693C>T | p.(Arg565Cys) | M | LPV | Richards et al. [28], Sun et al. [29], Wang et al. [30], Zhou et al. [31] |
28 | R | COL2A1 | Ex44 | c.3106C>T | p.(Arg1036*) | N | PV | Zhou et al. [31], Richards et al. [32], Savasta et al. [33] |
29 | R | COL2A1 | Ex44 | c.3106C>T | p.(Arg1036*) | N | PV | Zhou et al. [31], Richards et al. [32], Savasta et al. [33] |
30 | R | COL2A1 | Ex44 | c.3106C>T | p.(Arg1036*) | N | PV | Zhou et al. [31], Richards et al. [32], Savasta et al. [33] |
31 | R | COL2A1 | Ex44 | c.3106C>T | p.(Arg1036*) | N | PV | Zhou et al. [31], Richards et al. [32], Savasta et al. [33] |
32 | S | COL11A1 | IVS51 | c.3816+2dup | p.(?) | S | VUS | Novel |
33 | T | COL2A1 | Ex23 | c.1493G>A | p.(Gly498Asp) | M | VUS | Novel |
34 | U | COL11A1 | Ex29 | c.2308_2316del | p.(Val770_Gly772del) | IFD | VUS | Novel |
35 | U | COL11A1 | Ex29 | c.2308_2316del | p.(Val770_Gly772del) | IFD | VUS | Novel |
36 | V | COL2A1 | Ex11 | c.737G>A | p.(Gly246Asp) | M | VUS | Lee et al. [34] |
37 | W | COL2A1 | Ex44 | c.3106C>T | p.(Arg1036*) | N | PV | Zhou et al. [31], Richards et al. [32], Savasta et al. [33] |
Total (n = 37) | COL2A1 (n = 30) | COL11A1 (n = 7) | ||
---|---|---|---|---|
ACMG classification | PV (%) | 12 (32) | 12 (40) | 0 (0) |
LPV (%) | 15 (41) | 13 (43) | 2 (29) | |
VUS (%) | 10 (27) | 5 (17) | 5 (71) | |
Novel variants (%) | 17 (46) | 12 (40) | 5 (71) |
Gene | Exon/Intron | Nucleotide Change | No. of Patients | No. of RD Patients | No. of Bilateral RD Patients | No. of RD Eyes |
---|---|---|---|---|---|---|
COL2A1 | Ex9 | c.625C>T | 1 | 1 | 1 | |
COL2A1 | Ex11 | c.737G>A | 1 | 1 | 1 | |
COL2A1 | IVS13 | c.870+1G>A | 1 | 1 | 1 | |
COL2A1 | Ex23 | c.1493G>A | 1 | |||
COL2A1 | Ex26 | c.1693C>T | 5 | 4 | 3 | 7 |
COL2A1 | Ex28 | c.1844del | 1 | |||
COL2A1 | Ex31 | c.2003del | 3 | 3 | 1 | 4 |
COL2A1 | Ex40 | c.2678dup | 1 | |||
COL2A1 | IVS40 | c.2680-3C>G | 1 | |||
COL2A1 | Ex42 | c.2862C>T | 2 | |||
COL2A1 | Ex44 | c.3106C>T | 5 | 2 | 2 | |
COL2A1 | IVS45 | c.3165+1G>A | 1 | |||
COL2A1 | IVS47 | c.3327+1G>C | 2 | 2 | 2 | |
COL2A1 | Ex48 | c.3394del | 1 | |||
COL2A1 | Ex51 | c.3598G>C | 1 | |||
COL2A1 | Ex51 | c.3867C>A | 2 | |||
COL2A1 | Ex52 | c.4044G>C | 1 | 1 | 1 | |
COL11A1 | IVS15 | c.1630-2delA | 2 | 2 | 2 | |
COL11A1 | Ex29 | c.2308_2316del | 2 | 1 | 1 | |
COL11A1 | Ex49 | c.3703G>A | 2 | |||
COL11A1 | IVS51 | c.3816+2dup | 1 |
Variant Type | No. of RD Patients (%) | No. of Bilateral RD Patients (%) | No. of RD Eyes (%) |
---|---|---|---|
Missense (n = 11) | 6 (55) | 3 (27) | 9 (41) |
Synonymous (n = 2) | 0 (0) | 0 (0) | 0 (0) |
Splicing (n = 7) | 5 (71) | 2 (29) | 7 (50) |
Nonsense (n = 8) | 3 (38) | 0 (0) | 3 (19) |
Frame shift (n = 6) | 3 (50) | 1 (17) | 4 (33) |
In-frame deletion (n = 2) | 1 (50) | 0 (0) | 1 (25) |
Intron (n = 1) | 0 (0) | 0 (0) | 0 (0) |
Baseline Status | Total (N = 74) | Stickler Type 1 (N = 60) | Stickler Type 2 (N = 14) | |
---|---|---|---|---|
Mean BCVA (logMAR) | 0.40 ± 0.56 (n = 60) | 0.39 ± 0.57 (n = 48) | 0.45 ± 0.57 (n = 12) | |
Mean (range) Refractive error (D) | −8.23 ± 5.55 (−23 ± 0.125, n = 66) | −8.12 ± 5.49 (−23 ± 0, n = 52) | −8.62 ± 5.98 (−20 ± 0.125, n = 14) | |
Mean (range) Axial length (mm) | 27.59 ± 2.14 (23.74–31.64, n = 32) | 27.39 ± 2.17 (23.74–31.64, n = 26) | 28.43 ± 1.93 (26.39–31.26, n = 6) | |
Mean (range) age at the time of axial length measurement (year) | 24.75 ± 17.38 (4–56, n = 32) | 23.23 ± 17.48 (4–56, n = 26) | 31.33 ± 16.74 (10–45, n = 6) | |
Lens | Phakia, with cataract (%) | 12 (16.2) | 6 (10.0) | 6 (42.9) |
Phakia, without cataract (%) | 46 (62.2) | 42 (70.0) | 4 (28.6) | |
Pseudophakia (%) | 11 (14.9) | 6 (10.0) | 5 (35.7) | |
Aphakia (%) | 2 (2.7) | 2 (3.3) | 0 (0) | |
Anophthalmos (%) | 2 (2.7) | 2 (3.3) | 0 (0) | |
Vitreous | Membranous vitreous (%) | 35 (47.3) | 31 (51.7) | 4 (28.6) |
Beaded vitreous (%) | 5 (6.8) | 5 (8.3) | 0 (0) | |
Initial PVD (%) | 17 (23.0) | 13 (21.7) | 4 (28.6) | |
N/A (%) | 10 (13.5) | 9 (15.0) | 1 (7.1) | |
Retina | Paravascular pigmented atrophic lesion (%) | 26 (35.1) | 21 (35.0) | 4 (28.6) |
Lattice degeneration (%) | 54 (73.0) | 45 (75.0) | 9 (64.3) | |
Foveal hypoplasia (%) | 21 (28.4) | 16 (26.7) | 5 (35.7) | |
N/A (%) | 3 (4.1) | 3 (5.0) | 0 (0) |
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Choi, S.-I.; Woo, S.-J.; Oh, B.-L.; Han, J.; Lim, H.-T.; Lee, B.-J.; Joo, K.; Park, J.-Y.; Jang, J.-H.; So, M.-K.; et al. Genetic Characteristics and Phenotype of Korean Patients with Stickler Syndrome: A Korean Multicenter Analysis Report No. 1. Genes 2021, 12, 1578. https://doi.org/10.3390/genes12101578
Choi S-I, Woo S-J, Oh B-L, Han J, Lim H-T, Lee B-J, Joo K, Park J-Y, Jang J-H, So M-K, et al. Genetic Characteristics and Phenotype of Korean Patients with Stickler Syndrome: A Korean Multicenter Analysis Report No. 1. Genes. 2021; 12(10):1578. https://doi.org/10.3390/genes12101578
Chicago/Turabian StyleChoi, Soon-Il, Se-Joon Woo, Baek-Lok Oh, Jinu Han, Hyun-Taek Lim, Byung-Joo Lee, Kwangsic Joo, Jun-Young Park, Ja-Hyun Jang, Min-Kyung So, and et al. 2021. "Genetic Characteristics and Phenotype of Korean Patients with Stickler Syndrome: A Korean Multicenter Analysis Report No. 1" Genes 12, no. 10: 1578. https://doi.org/10.3390/genes12101578
APA StyleChoi, S. -I., Woo, S. -J., Oh, B. -L., Han, J., Lim, H. -T., Lee, B. -J., Joo, K., Park, J. -Y., Jang, J. -H., So, M. -K., & Kim, S. -J. (2021). Genetic Characteristics and Phenotype of Korean Patients with Stickler Syndrome: A Korean Multicenter Analysis Report No. 1. Genes, 12(10), 1578. https://doi.org/10.3390/genes12101578