Choosing the Best Tissue and Technique to Detect Mosaicism in Fibrous Dysplasia/McCune–Albright Syndrome (FD/MAS)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Selection
2.2. Nucleic Acid Extraction
2.3. Molecular Analyses
2.4. Bioinformatic Approach
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Weinstein, L.S.; Chen, M.; Liu, J. Gs(Alpha) Mutations and Imprinting Defects in Human Disease. Ann. N. Y. Acad. Sci. 2002, 968, 173–197. [Google Scholar] [CrossRef] [PubMed]
- Thiele, S.; Mantovani, G.; Barlier, A.; Boldrin, V.; Bordogna, P.; De Sanctis, L.; Elli, F.M.; Freson, K.; Garin, I.; Grybek, V.; et al. From Pseudohypoparathyroidism to Inactivating PTH/PTHrP Signalling Disorder (IPPSD), a Novel Classification Proposed by the EuroPHP Network. Eur. J. Endocrinol. 2016, 175, P1–P17. [Google Scholar] [CrossRef] [PubMed]
- Fokkema, I.F.A.C.; Taschner, P.E.M.; Schaafsma, G.C.P.; Celli, J.; Laros, J.F.J.; den Dunnen, J.T. LOVD v.2.0: The next Generation in Gene Variant Databases. Hum. Mutat. 2011, 32, 557–563. [Google Scholar] [CrossRef]
- Elli, F.M.; Linglart, A.; Garin, I.; de Sanctis, L.; Bordogna, P.; Grybek, V.; Pereda, A.; Giachero, F.; Verrua, E.; Hanna, P.; et al. The Prevalence of GNAS Deficiency-Related Diseases in a Large Cohort of Patients Characterized by the EuroPHP Network. J. Clin. Endocrinol. Metab. 2016, 101, 3657–3668. [Google Scholar] [CrossRef]
- Nakamoto, J.M.; Zimmerman, D.; Jones, E.A.; Loke, K.Y.; Siddiq, K.; Donlan, M.A.; Brickman, A.S.; Van Dop, C. Concurrent Hormone Resistance (Pseudohypoparathyroidism Type Ia) and Hormone Independence (Testotoxicosis) Caused by a Unique Mutation in the Gαs Gene. Biochem. Mol. Med. 1996, 58, 18–24. [Google Scholar] [CrossRef]
- Iiri, T.; Herzmark, P.; Nakamoto, J.M.; van Dop, C.; Bourne, H.R. Rapid GDP Release from Gsα in Patients with Gain and Loss of Endocrine Function. Nature 1994, 371, 164–168. [Google Scholar] [CrossRef] [PubMed]
- Landis, C.A.; Masters, S.B.; Spada, A.; Pace, A.M.; Bourne, H.R.; Vallar, L. GTPase Inhibiting Mutations Activate the α Chain of Gs and Stimulate Adenylyl Cyclase in Human Pituitary Tumours. Nature 1989, 340, 692–696. [Google Scholar] [CrossRef]
- Javaid, M.K.; Boyce, A.; Appelman-Dijkstra, N.; Ong, J.; Defabianis, P.; Offiah, A.; Arunde, P.; Shaw, N.; Pos, V.D.; Underhil, A.; et al. Best Practice Management Guidelines for Fibrous Dysplasia/McCune-Albright Syndrome: A Consensus Statement from the FD/MAS International Consortium. Orphanet J. Rare Dis. 2019, 14, 139. [Google Scholar] [CrossRef]
- Ringel, M.D.; Schwindinger, W.F.; Levine, M.A. Clinical Implications of Genetic Defects in G Proteins. The Molecular Basis of McCune-Albright Syndrome and Albright Hereditary Osteodystrophy. Medicine 1996, 75, 171–184. [Google Scholar] [CrossRef]
- Miyado, M.; Fukami, M.; Takada, S.; Terao, M.; Nakabayashi, K.; Hata, K.; Matsubara, Y.; Tanaka, Y.; Sasaki, G.; Nagasaki, K.; et al. Germline-Derived Gain-of-Function Variants of Gs α-Coding GNAS Gene Identified in Nephrogenic Syndrome of Inappropriate Antidiuresis. J. Am. Soc. Nephrol. 2019, 30, 877–889. [Google Scholar] [CrossRef]
- Biebermann, H.; Kleinau, G.; Schnabel, D.; Bockenhauer, D.; Wilson, L.C.; Tully, I.; Kiff, S.; Scheerer, P.; Reyes, M.; Paisdzior, S.; et al. A New Multisystem Disorder Caused by the Gαs Mutation p.F376V. J. Clin. Endocrinol. Metab. 2019, 104, 1079–1089. [Google Scholar] [CrossRef]
- Boyce, A.M.; Turner, A.; Watts, L.; Forestier-Zhang, L.; Underhill, A.; Pinedo-Villanueva, R.; Monsell, F.; Tessaris, D.; Burren, C.; Masi, L.; et al. Improving Patient Outcomes in Fibrous Dysplasia/McCune-Albright Syndrome: An International Multidisciplinary Workshop to Inform an International Partnership. Arch. Osteoporos. 2017, 12, 21. [Google Scholar] [CrossRef] [PubMed]
- Leet, A.I.; Collins, M.T. Current Approach to Fibrous Dysplasia of Bone and McCune–Albright Syndrome. J. Child. Orthop. 2007, 1, 3–17. [Google Scholar] [CrossRef] [PubMed]
- Albright, F.; Butler, A.M.; Hampton, A.O.; Smith, P. Syndrome Characterized by Osteitis Fibrosa Disseminata, Areas of Pigmentation and Endocrine Dysfunction, with Precocious Puberty in Females. N. Engl. J. Med. 1937, 216, 727–746. [Google Scholar] [CrossRef]
- McCune, D. Osteitis Fibrosa Cystica: The Case of a Nine-Year-Old Girl Who Also Exhibits Precocious Puberty, Multiple Pigmen-Tation of the Skin and Hyperthyroidism. Am. J. Dis. Child 1936, 52, 743–744. [Google Scholar]
- Dumitrescu, C.E.; Collins, M.T. McCune-Albright Syndrome. Orphanet J. Rare Dis. 2008, 3, 12. [Google Scholar] [CrossRef] [PubMed]
- Mieszczak, J.; Eugster, E.A. Treatment of Precocious Puberty in McCune-Albright Syndrome. Pediatr. Endocrinol. Rev. 2007, 4 (Suppl. S4), 419–422. [Google Scholar]
- Bianco, P.; Riminucci, M.; Majolagbe, A.; Kuznetsov, S.A.; Collins, M.T.; Mankani, M.H.; Corsi, A.; Bone, H.G.; Wientroub, S.; Spiegel, A.M.; et al. Mutations of the GNAS1 Gene, Stromal Cell Dysfunction, and Osteomalacic Changes in Non-McCune-Albright Fibrous Dysplasia of Bone. J. Bone Miner. Res. 2000, 15, 120–128. [Google Scholar] [CrossRef]
- Roszko, K.L.; Guthrie, L.; Li, X.; Collins, M.T.; de Castro, L.F.; Boyce, A.M. Identification of GNAS Variants in Circulating Cell-Free DNA from Patients with Fibrous Dysplasia/McCune Albright Syndrome. J. Bone Miner. Res. 2023, 38, 443–450. [Google Scholar] [CrossRef]
- Idowu, B.D.; Al-Adnani, M.; O’Donnell, P.; Yu, L.; Odell, E.; Diss, T.; Gale, R.E.; Flanagan, A.M. A Sensitive Mutation-Specific Screening Technique for GNAS1 Mutations in Cases of Fibrous Dysplasia: The First Report of a Codon 227 Mutation in Bone. Histopathology 2007, 50, 691–704. [Google Scholar] [CrossRef]
- Weinstein, L.S.; Shenker, A.; Gejman, P.V.; Merino, M.J.; Friedman, E.; Spiegel, A.M. Activating Mutations of the Stimulatory G Protein in the McCune-Albright Syndrome. N. Engl. J. Med. 1991, 325, 1688–1695. [Google Scholar] [CrossRef]
- Riminucci, M.; Saggio, I.; Robey, P.G.; Bianco, P. Fibrous Dysplasia as a Stem Cell Disease. J. Bone Miner. Res. 2006, 21 (Suppl. S2), P125–P131. [Google Scholar] [CrossRef] [PubMed]
- Hall, J.G. Review and Hypotheses: Somatic Mosaicism: Observations Related to Clinical Genetics. Am. J. Hum. Genet. 1988, 43, 355–363. [Google Scholar]
- Youssoufian, H.; Pyeritz, R.E. Mechanisms and Consequences of Somatic Mosaicism in Humans. Nat. Rev. Genet. 2002, 3, 748–758. [Google Scholar] [CrossRef] [PubMed]
- Mohiuddin, M.; Kooy, R.F.; Pearson, C.E. De Novo Mutations, Genetic Mosaicism and Human Disease. Front. Genet. 2022, 13, 983668. [Google Scholar] [CrossRef]
- Veltman, J.A.; Brunner, H.G. De Novo Mutations in Human Genetic Disease. Nat. Rev. Genet. 2012, 13, 565–575. [Google Scholar] [CrossRef] [PubMed]
- Mefford, H.C. Mosaicism in Clinical Genetics. Cold Spring Harb. Mol. Case Stud. 2021, 7, a006125. [Google Scholar] [CrossRef]
- Vado, Y.; Pereda, A.; Manero-Azua, A.; Perez de Nanclares, G. Frequency of de Novo Variants and Parental Mosaicism in Families with Inactivating PTH/PTHrP Signaling Disorder Type 2. Front. Endocrinol. 2023, 13, 1055431. [Google Scholar] [CrossRef]
- Lee, M.; Lui, A.C.Y.; Chan, J.C.K.; Doong, P.H.L.; Kwong, A.K.Y.; Mak, C.C.Y.; Li, R.H.W.; Kan, A.S.Y.; Chung, B.H.Y. Revealing Parental Mosaicism: The Hidden Answer to the Recurrence of Apparent de Novo Variants. Hum. Genom. 2023, 17, 91. [Google Scholar] [CrossRef]
- Rohlin, A.; Wernersson, J.; Engwall, Y.; Wiklund, L.; Björk, J.; Nordling, M. Parallel Sequencing Used in Detection of Mosaic Mutations: Comparison with Four Diagnostic DNA Screening Techniques. Hum. Mutat. 2009, 30, 1012–1020. [Google Scholar] [CrossRef]
- Morandi, A.; Bonnefond, A.; Lobbens, S.; Carotenuto, M.; del Giudice, E.M.; Froguel, P.; Maffeis, C. A Girl with Incomplete Prader-Willi Syndrome and Negative MS-PCR, Found to Have Mosaic Maternal UPD-15 at SNP Array. Am. J. Med. Genet. Part A 2015, 167, 2720–2726. [Google Scholar] [CrossRef]
- Sánchez, J.; Fernández, R.; Madruga, M.; Bernabeu-Wittel, J.; Antiñolo, G.; Borrego, S. Somatic and Germ-Line Mosaicism of Deletion 15q11.2-Q13 in a Mother of Dyzigotic Twins with Angelman Syndrome. Am. J. Med. Genet. A 2014, 164A, 370–376. [Google Scholar] [CrossRef]
- Schwab, A.L.; Tuohy, T.M.F.; Condie, M.; Neklason, D.W.; Burt, R.W. Gonadal Mosaicism and Familial Adenomatous Polyposis. Fam. Cancer 2008, 7, 173–177. [Google Scholar] [CrossRef] [PubMed]
- Campbell, I.M.; Yuan, B.; Robberecht, C.; Pfundt, R.; Szafranski, P.; McEntagart, M.E.; Nagamani, S.C.S.; Erez, A.; Bartnik, M.; Wiśniowiecka-Kowalnik, B.; et al. Parental Somatic Mosaicism Is Underrecognized and Influences Recurrence Risk of Genomic Disorders. Am. J. Hum. Genet. 2014, 95, 173–182. [Google Scholar] [CrossRef] [PubMed]
- Qin, L.; Wang, J.; Tian, X.; Yu, H.; Truong, C.; Mitchell, J.J.; Wierenga, K.J.; Craigen, W.J.; Zhang, V.W.; Wong, L.-J.C. Detection and Quantification of Mosaic Mutations in Disease Genes by Next-Generation Sequencing. J. Mol. Diagn. 2016, 18, 446–453. [Google Scholar] [CrossRef] [PubMed]
- White, T.B.; McCoy, A.M.; Streva, V.A.; Fenrich, J.; Deininger, P.L. A Droplet Digital PCR Detection Method for Rare L1 Insertions in Tumors. Mob. DNA 2014, 5, 30. [Google Scholar] [CrossRef]
- Daly, A.F.; Yuan, B.; Fina, F.; Caberg, J.-H.; Trivellin, G.; Rostomyan, L.; de Herder, W.W.; Naves, L.A.; Metzger, D.; Cuny, T.; et al. Somatic Mosaicism Underlies X-Linked Acrogigantism Syndrome in Sporadic Male Subjects. Endocr. Relat. Cancer 2016, 23, 221–233. [Google Scholar] [CrossRef]
- Wilbe, M.; Gudmundsson, S.; Johansson, J.; Ameur, A.; Stattin, E.-L.; Annerén, G.; Malmgren, H.; Frykholm, C.; Bondeson, M.-L. A Novel Approach Using Long-Read Sequencing and DdPCR to Investigate Gonadal Mosaicism and Estimate Recurrence Risk in Two Families with Developmental Disorders. Prenat. Diagn. 2017, 37, 1146–1154. [Google Scholar] [CrossRef]
- Vasilev, V.; Daly, A.F.; Thiry, A.; Petrossians, P.; Fina, F.; Rostomyan, L.; Silvy, M.; Enjalbert, A.; Barlier, A.; Beckers, A. McCune-Albright Syndrome: A Detailed Pathological and Genetic Analysis of Disease Effects in an Adult Patient. J. Clin. Endocrinol. Metab. 2014, 99, E2029–E2038. [Google Scholar] [CrossRef]
- Baker, S.W.; Duffy, K.A.; Richards-Yutz, J.; Deardorff, M.A.; Kalish, J.M.; Ganguly, A. Improved Molecular Detection of Mosaicism in Beckwith-Wiedemann Syndrome. J. Med. Genet. 2021, 58, 178–184. [Google Scholar] [CrossRef]
- Manero-Azua, Á.; Pereda, A.; González Cabrera, N.; Martínez de Salinas Santamaría, M.Á.; Cámara Balda, A.; Pérez de Nanclares, G. Vitamin D Deficiency in Adulthood: Presentation of 2familial Cases Simulating Pseudohypoparathyroidism. Med. Clin. 2023, 161, 493–497. [Google Scholar] [CrossRef] [PubMed]
- Illumina. Somatic Variant Caller; Illumina: San Diego, CA, USA, 2014; Volume 1. [Google Scholar]
- Robinson, J.T.; Thorvaldsdóttir, H.; Winckler, W.; Guttman, M.; Lander, E.S.; Getz, G.; Mesirov, J.P. Integrative Genomics Viewer. Nat. Biotechnol. 2011, 29, 24–26. [Google Scholar] [CrossRef]
- Zhang, S.; Zhou, Y.; Xiao, G.; Qiu, X. Application of Various Genetic Analysis Techniques for Detecting Two Rare Cases of 9p Duplication Mosaicism during Prenatal Diagnosis. Mol. Genet. Genomic Med. 2023, 11, e2229. [Google Scholar] [CrossRef]
- Alfirevic, Z.; Navaratnam, K.; Mujezinovic, F. Amniocentesis and Chorionic Villus Sampling for Prenatal Diagnosis. Cochrane Database Syst. Rev. 2017, 9, CD003252. [Google Scholar] [CrossRef]
- de Sanctis, L.; Galliano, I.; Montanari, P.; Matarazzo, P.; Tessaris, D.; Bergallo, M. Combining Real-Time COLD- and MAMA-PCR TaqMan Techniques to Detect and Quantify R201 GNAS Mutations in the McCune-Albright Syndrome. Horm. Res. Paediatr. 2017, 87, 342–349. [Google Scholar] [CrossRef]
- Li, H. Toward Better Understanding of Artifacts in Variant Calling from High-Coverage Samples. Bioinformatics 2014, 30, 2843–2851. [Google Scholar] [CrossRef]
- Strom, S.P. Current Practices and Guidelines for Clinical Next-Generation Sequencing Oncology Testing. Cancer Biol. Med. 2016, 13, 3–11. [Google Scholar] [CrossRef]
- Cazzato, G.; Caporusso, C.; Arezzo, F.; Cimmino, A.; Colagrande, A.; Loizzi, V.; Cormio, G.; Lettini, T.; Maiorano, E.; Scarcella, V.S.; et al. Formalin-Fixed and Paraffin-Embedded Samples for Next Generation Sequencing: Problems and Solutions. Genes 2021, 12, 1472. [Google Scholar] [CrossRef]
Patient Code | Sex | Age at Study | Skeletal Abnormalities | Skin Abnormalities | Precocious Puberty | Other Manifestations | Sanger (Blood) | Sanger (Tissue) | NGS (Blood) | NGS (Tissue) | Mutation |
---|---|---|---|---|---|---|---|---|---|---|---|
GS0113 | M | 12 | ND | Yes | ND | ND | Negative | Negative (skin) | - | Negative (skin) | - |
GS1029 | M | 17 | Yes | No | No | ND | Negative | Positive (bone) | Negative | Positive (34%) C:225× T:114× (bone) | p.R201C |
GS1030 | F | 8 | Yes | Yes | ND | ND | Negative | Negative (bone) | Negative | Negative (bone) | - |
GS1043 | F | 14 | Yes (polyostotic) | Yes | ND | ND | Negative | Negative (skin) | Negative | Negative (skin) | - |
GS1045 | F | ND | ND | ND | ND | ND | Negative | Negative (buccal swab) | Negative | - | - |
GS1048 | F | 8 | No | No | Yes | Ovarian cyst | Negative | Negative (ovarian cyst *) | Negative | Sequence of bad quality | - |
GS1050 | F | ND | ND | Yes | ND | ND | Negative | - | Negative | - | - |
GS1066 | F | ND | ND | ND | ND | ND | Negative | - | - | - | - |
GS1072 | F | 10 | ND | Yes | Yes | Ovarian cyst | Negative | Negative (ovarian cyst) | Negative | Negative (ovarian cyst) | - |
GS1077 | F | ND | ND | Yes | ND | ND | Negative | Negative (buccal swab) | Negative | - | - |
GS1079 | M | ND | ND | ND | ND | ND | Negative | - | Negative | - | - |
GS1081 | M | 29 | Yes | Yes | Yes | Hepatic affection | Sample of bad quality | Negative (liver) | Sample of bad quality | Negative (liver) | - |
GS1082 | F | ND | ND | ND | ND | ND | Negative | - | Negative | - | - |
GS1087 | F | ND | ND | Yes | ND | ND | Negative | Negative (skin) | Negative | Negative (skin) | - |
GS1091 | F | ND | ND | ND | ND | ND | Negative | - | Negative | - | - |
GS1098 | F | ND | ND | ND | Yes | ND | Negative | - | Sequence of bad quality | - | - |
GS1102 | M | 0 | Yes | Yes | ND | Hyperthyroidism | Negative | Negative (skin) | Positive (5%) G:345× A:18× | Positive (4%) G:388× A:15× (skin) | p.R201H |
GS1105 | M | 8 | Yes (polyostotic) | ND | ND | ND | Negative | Negative (bone *) | Positive (3%) G:230× A:8× | Negative (bone *) | p.R201H |
GS1109 | F | 1 | Yes | Yes | ND | Hyperthyroidism | Negative | Positive (thyroid) | Positive (1%) G:256× A:2× | Positive (25%) G:207× A:71× (thyroid) | p.R201H |
GS1128 | F | 29 | Yes | No | No | ND | - | Positive (bone) | - | - | p.R201C |
GS1144 | F | 9 | ND | Yes | Yes | ND | Negative | - | Negative | - | - |
GS1172 | M | 9 | Yes (polyostotic) | Yes | No | ND | Negative | - | Negative | - | - |
GS1176 | F | 3 | ND | Yes | No | ND | Negative | - | - | - | - |
GS1178 | F | 11 | Yes | Yes | Yes | ND | Negative | - | - | - | - |
GS1189 | M | 21 | Yes | No | Yes | Hydrocephaly | Negative | Positive pituitary *; Negative bone * | Negative | Sequence of bad quality (G:13× A:14×) * | p.R201H |
GS1224 | M | 29 | Yes | Yes | No | Nephrotic syndrome | - | Sample of bad quality (kidney *) | - | Sequence of bad quality (kidney *) | - |
GS1228 | F | 3 | Yes (polyostotic) | Yes | ND | ND | Negative | Negative (skin) | Negative | Positive (1%) C:215× T:2× (skin) | p.R201C |
GS1240 | F | ND | ND | ND | ND | ND | - | Negative | - | Negative | - |
GS1241 | F | 1 | Yes | ND | ND | ND | - | Negative (bone) | - | Negative (bone) | - |
GS1255 | F | 10 | ND | Yes | Yes | Ovarian cyst | Negative | - | Negative | - | - |
GS1258 | F | 0 | ND | ND | ND | Neonatal Cushing’s syndrome | Negative | Negative (skin) | Negative | Negative (skin) | - |
GS1281 | M | ND | ND | ND | ND | ND | - | Negative (skin) | - | Positive (1%) C:177× T:2× (skin) | p.R201C |
GS1297 | M | 14 | Yes (polyostotic) | No | No | GH and prolactin hypersecretion | - | Negative (bone) | - | Positive (27%) C:208× T:78× (bone) | p.R201C |
DX1180 | F | 6 | No | Yes | Yes | ND | Negative | - | Negative | - | - |
GS1304 | F | 9 | Yes (monostotic) | No | Yes | ND | Negative | - | Negative | - | - |
GS1311 | F | 9 | Yes | Yes | Yes | Ovarian cyst | Negative | - | Negative | - | - |
GS1312 | F | 9 | ND | Yes | Yes | ND | Negative | - | Positive (1%) G:225× A:4× | - | p.R201H |
GS1313 | F | ND | ND | ND | ND | ND | - | Negative | - | Negative | - |
GS1329 | F | 5 | ND | ND | Yes | ND | Negative | - | Negative | - | - |
GS1333 | M | 68 | Yes (polyostotic) | ND | ND | ND | Negative | - | Negative | - | - |
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Vado, Y.; Manero-Azua, A.; Pereda, A.; Perez de Nanclares, G. Choosing the Best Tissue and Technique to Detect Mosaicism in Fibrous Dysplasia/McCune–Albright Syndrome (FD/MAS). Genes 2024, 15, 120. https://doi.org/10.3390/genes15010120
Vado Y, Manero-Azua A, Pereda A, Perez de Nanclares G. Choosing the Best Tissue and Technique to Detect Mosaicism in Fibrous Dysplasia/McCune–Albright Syndrome (FD/MAS). Genes. 2024; 15(1):120. https://doi.org/10.3390/genes15010120
Chicago/Turabian StyleVado, Yerai, Africa Manero-Azua, Arrate Pereda, and Guiomar Perez de Nanclares. 2024. "Choosing the Best Tissue and Technique to Detect Mosaicism in Fibrous Dysplasia/McCune–Albright Syndrome (FD/MAS)" Genes 15, no. 1: 120. https://doi.org/10.3390/genes15010120
APA StyleVado, Y., Manero-Azua, A., Pereda, A., & Perez de Nanclares, G. (2024). Choosing the Best Tissue and Technique to Detect Mosaicism in Fibrous Dysplasia/McCune–Albright Syndrome (FD/MAS). Genes, 15(1), 120. https://doi.org/10.3390/genes15010120