A Capacity Audit of Medical Geneticists and Genetic Counsellors in South Africa, 2024: A National Crisis
Abstract
:1. Introduction
1.1. Overview of South Africa
1.2. History of Genetic Services in South Africa
1.3. Current Genetic Services in South Africa
1.3.1. Medical Genetics
1.3.2. Genetic Counselling
2. Materials and Methods
2.1. Retrospective and Current Data Compilation
2.2. Modelled Prospective Data
- (a)
- (b)
- Time period: Modelled estimates were produced for 2025 to 2045 (original model 2019 to 2040).
- (c)
- Population data: Updated South African population data sourced from Thembisa version 4.7 were used [28,48]. Since this dataset included population estimates until 2030 only it was necessary to extrapolate public healthcare population data for 2031 to 2045. Extrapolation assumed stable year-on-year population growth of 1.48%, based on the average growth rate observed in Thembisa data from 2024 to 2030 [28,48]. The portion of the population served by private healthcare remained unchanged as per the original model throughout.
- (d)
- Starting population: 2024 was used as the starting point for populations of MG registrars and GC interns. This was split by age, sex and training study period (1st year/2nd–4th year for MG registrars and 1st year/2nd year for GC interns) based on the data compiled, as outlined above. For cases when specific MG/GC ages were unavailable, estimates were derived based on the year of qualification for MG/registrars and the year of postgraduate degree for GC/interns indicated in the HPCSA online database.
- (e)
- Capacity Rates: For MG, the recommended capacity rate used was as per the previous model sourced from the NDOH 2030 HRH Strategy of 0.21 per 100 000 population [43]. Since no capacity ratio is indicated for GC in the HRH strategy, the previously recommended ratio of four GC per MG was implemented [39,49].
- (f)
- Qualification rates: The model projections assume that the number of MG registrars/GC interns remains stable i.e., as they qualify, they are replaced with a new intake of registrars/interns. The qualification rates (quantifying newly qualified MG/GC entering the workforce) for MG registrars and GC interns were calculated using the compiled actual numbers of registrars and interns:
- The number of MG registrars who qualified thus far in 2024 (n = 2) was divided by the total number of registrars in their 2nd to 4th years of training in 2023 (n = 5). The resulting ratio of 0.40 was used as the model qualification rate for MG registrars (versus 0.23 used for all specialists in the original model) [44].
- Genetic counsellor intern training is a minimum of two years. The number of interns who graduated in 2023 (n = 1) was divided by the number of interns in their 2nd year of internship in 2023 (n = 3). This equated to a qualification rate of 0.33 for GC interns.
- (g)
- Movement between healthcare sectors: The probability of MG moving from the public to the private sector is low, therefore the model probability remained at 10% until retirement age (60–65 years), when increased to 50% due to mandatory retirement ages in the public sector (Table 2). For GC, based on the number currently employed privately, movement between the sectors is more common, making the probability of GC moving to private practice a higher assumption in the model. The probability of moving back to the public sector from private for both cadres was aligned to the original model, which assumed that HCP may move back to the public sector closer to retirement to “give back” to the sector.
- (h)
- Movement between part-time and full-time: Most MG/GC in SA are female, making both cadres more likely to move from full-time to part-time in their reproductive years, between ages 32–37 and then back to full-time as child-rearing responsibilities decrease (Table 2), as per the original model assumptions [44,50]. While the original model split these probabilities between males and females, a combined probability was used in the updated version. Since collated MG/GC dataset was mostly female, the model would have required extensive re-working to include a gender split and was not deemed necessary.
- (i)
- Emigration: Using collated retrospective data, emigration probabilities were calculated separately for MG and GC, by dividing the number of emigrations to date by the total number of those registered with the HPCSA for both cadres. This total probability for each cadre was then split by age group using the estimated ages of the MG/CG at the time of emigration (Table 2).
- (j)
- Scenarios Modelled: As per the original model, four different scenarios were prospectively modelled:
- Scenario 1: Current capacity rates for MG/GC 2024 (using compiled data) were used to project capacity for the public healthcare population for 2025–2045.
- Scenario 2: Current capacity rates for MG/GC 2024 (using compiled data) were used to project capacity for the private healthcare population for 2025–2045.
- Scenario 4: The required rates to reach the recommended target ratios in 2045 (Scenario 3) were calculated using linear interpolation. The required rates (i.e., how many MG/GC should be annually added to the system to meet the 2045 target) were computed for each year from 2024–2025. This method assumes linear annual increments in the required ratio. This differed from the original Wishnia model Scenario 4, which enabled the capacity rate to change and respond to evolving capacity need caused by changes in the burden of disease over time [44]. While this approach worked well for HCP cadres allocated to a sub-population (e.g., paediatric population), it was not deemed relevant for MG/GC since both these cadres serve the total population and are known to be extremely scarce. Rather, quantifying the gap between current and recommended capacity by 2045 was deemed to be more appropriate for this study.
Assumption | Original Model * [44,51] | Updated Model (Current Study) |
---|---|---|
Age range of MG registrars | 28–50 years | |
Age range of MG | 31–75 years | |
Age range of GC | - | 26–75 years ** |
Geography | South Africa | |
Remunerated work outside public sector | 70% of time public, 30% private | MG: 95% of time public, 5% private ** GC: 87.5% of time public, 12.5% private ** Average of the two rates combined used 91% public, 9% in private |
Transition probabilities | ||
Retirement age range—public | 55–65 years | |
Retirement age range—private | 65–75 years | |
Death—Female | 25% of SA85–90 Light | SA85–90 Light Male & female rates weighted for average MG/GC calculated on retrospective data ** |
Death—Male | 45% of SA85–90 Light | |
Move: public to private | Range of probabilities between end of registrar-ship and retirement | Range of probabilities between end of registrar-ship and retirement ** |
Move: private to public | Range of probabilities between 45–65 years | Range of probabilities between 45–65 years ** |
Move: full-time to part-time (female) | A range of options between 32–39 years | Male/female data aggregated. Range of options for MG/GC *** |
Move: full-time to part-time (male) | A range of options between 50–65 years | Male/female data aggregated. Range of options included for MG/GC *** |
Move: part-time to full-time (female) | Range of possibilities between 40–55 years | Range of possibilities, split between MG/GC, between 40–55 years ** |
Move: part-time to full-time (male) | 0 (move at end of career) | Original model assumptions |
Probability of emigrating (medical geneticists) | Range of possibilities between 31–45 years, all specialties. | Range of possibilities between 31–50 years ** |
Probability of emigrating (genetic counsellors) | A range of possibilities between 25–40 years ** | |
Full-time equivalent (FTE) calculations for registrars | 1st year registrar 60% FTE 2nd–6th year registrars weighted to derive weighted average 80% FTE | Original model assumptions: 1st years 60% FTE 2nd–4th years 80% FTE |
Full-time equivalent calculations for part-time cadre | Guided by public sector 5/8ths posts (62.5%) | N/A All MG/GC posts are FT |
Probability Moving Public to Private | ||||
---|---|---|---|---|
Age Range | Original [45] | Updated: Medical Geneticists | Updated: Genetic Counsellors | |
31–35 years | 25% | 10% | 50% | |
35–40 years | 25% | 10% | 30% | |
40–50 years | 15% | 10% | 10% | |
50–55 years | 25% | 10% | 30% | |
55–60 years | 25% | 10% | 30% | |
60–65 years | 35% | 50% | 40% | |
65–75 years | 0% | 0% | 0% | |
Probability Moving Private to Public | ||||
Age Range | Original [45] | Updated: Medical Geneticists | Updated: Genetic Counsellors | |
40–50 years | 10% | 20% | 20% | |
50–60 years | 5% | 5% | 5% | |
60–65 years | 2% | 2% | 2% | |
Probability Moving Full-Time to Part-Time | ||||
Original Model | Updated Model | |||
Age Range | Female | Male | Medical Geneticists | Genetic Counsellors |
32–35 years | 10% | 0 | 5% | 15% |
35–37 years | 25% | 0 | 20% | 25% |
37–39 years | 15% | 0 | 15% | 15% |
50–55 years | 0 | 15% | 10% | 10% |
55–60 years | 0 | 20% | 10% | 10% |
60–65 years | 0 | 25% | 25% | 25% |
Probability Moving Part-Time to Full-Time (Females Only) | ||||
Age Range | Original | Updated: Medical Geneticists | Updated: Genetic Counsellors | |
40–45 years | 50% | 30% | 30% | |
45–50 years | 35% | 50% | 50% | |
50–55 years | 25% | 25% | 25% | |
Probability of Emigration | ||||
Age Range | Original | Medical Geneticists | Genetic Counsellors | |
25–30 | 0 | 0 | 22% | |
31–35 | 4% | 2% | 2% | |
36–40 | 6% | 12% | 5% | |
41–45 | 3% | 12% | 0 | |
46–50 | 0 | 7% | 0 |
3. Results
3.1. Retrospective Data
3.1.1. Geographical Distribution
3.1.2. Medical Geneticists
3.1.3. Genetic Counsellors
3.2. Current Data
3.2.1. Geographical Distribution
3.2.2. Public/Private Sectors
3.2.3. Ongoing Training
3.3. Modelled Projected Data
- Scenario 1: Current rates for public healthcare sector in 2024 projected 2025–2045.
- Scenario 2: Current rates for private healthcare sector in 2024 projected 2025–2045.
- Scenario 3: Recommended 2030 HRH rates projected 2025–2045.
- Scenario 4: Required rates from 2025 to reach Scenario 3 ratio target in 2045.
Analysis of Target Ratios across Scenarios
4. Discussion
4.1. Medical Geneticists
4.1.1. Ageing Workforce
4.1.2. Private Practice Challenges
4.1.3. Lack of Public Posts
Burnout
4.2. Genetic Counsellors
4.2.1. Lack of Appropriate and Standardised Renumeration
4.2.2. Lack of Public Posts
4.2.3. Emigration
4.3. Limited Training Capacity
4.3.1. Medical Geneticists
4.3.2. Genetic Counsellors
4.4. Additional Challenges
4.4.1. Growing Genetic Health Need
4.4.2. Insufficient Planning and Implementation
4.4.3. Inadequate Clinical and Administrative Support
4.4.4. Under-Utilisation of Telemedicine and Outreach
4.5. Study Limitations
- The use of approximate/average values for the projected capacity data, which vary in practice.
- There is no comprehensive, definitive dataset of HCP in the country, necessitating a multisource approach for compiling data.
- Data from one year (2023) were used to calculate qualification rates for MG registrars and GC interns, while this may vary year-on-year.
- Training and employments costs for the two HCP cadres are not included.
- Using the total population of the country as the target population prevents specific, stratified capacity requirements for periods across the life course (peri-natal, childhood, adolescence and old age), when there is greater need for MG/GC.
4.6. Recommendations
- Comprehensively and transparently plan the MG/GC workforce and staffing norms for the coming decades, considering the predicted epidemiologic shifts and ensuring appropriate numbers of posts are allocated. This may be part of a separate healthcare-wide workforce planning body or initiative and should fully consider genetic services in the packages of care offered through NHI.
- Undertaking similar audits for medical scientists, genetic nurses and other associated HCP cadres (e.g., chemical pathologists) within genetic services and for associated specialties across healthcare, to quantify capacity shortfalls. Prospective models could also be stratified for these cadres, as well as MG/GC for specific sub-populations when CD more commonly arise, i.e., paediatric population aged 0–17 years and adults aged 50+ as per the original model for other cadres [44].
- Developing the health economics evidence-base to identify the costs, health outcomes and opportunity costs for components of genetic services, to inform implementation of relevant healthcare policies [21]. An extrinsic, independent approach, incorporating global best practice on Health Technology Assessment is needed to develop a detailed, costed implementation plan for the South African Clinical Guidelines for Genetic Services [21].
- Clarifying and standardising the professional level and renumeration of GC and developing national GC capacity ratios as a component of human resource planning for healthcare.
- Consider reinstating the role and training of genetic nurses countrywide and extending the scope of practice of other relevant HCP, including community healthcare workers, to expand genetic services capacity [70].
- Developing innovative solutions to address identified geographical inequity, such as expanding telehealth countrywide and funding of outreach clinics.
- Undertaking an audit of biochemical/genetic testing available in SA, consolidated into an innovative, updatable, accessible format to facilitate HCP referrals for testing—in-step with emerging technologies, new offerings and initiatives.
5. Conclusions
“Health workforce planning needs to be actively and continuously managed in order to prevent supply-demand gaps from emerging, as has occurred in South Africa” [44].
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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SA Province | Publicly Served Population (‘000) | % of Total Population [30] | Medical Geneticists: | Genetic Counsellors: | ||||
Public | Public | |||||||
Required | Actual | % Capacity | Required | Actual | % Capacity | |||
Eastern Cape | 6,160 | 12% | 13 | 0 | 0% | 52 | 0 | 0% |
Free State | 2,540 | 5% | 5 | 0 | 0% | 21 | 0 | 0% |
Gauteng | 12,870 | 24% | 27 | 6 | 22% | 108 | 6 | 6% |
KwaZulu-Natal | 10,795 | 20% | 23 | 0 | 0% | 91 | 0 | 0% |
Limpopo | 6,096 | 11% | 13 | 0 | 0% | 51 | 0 | 0% |
Mpumalanga | 4,521 | 9% | 9 | 0 | 0% | 38 | 0 | 0% |
Northern Cape | 1,066 | 2% | 2 | 0 | 0% | 9 | 0 | 0% |
North-West | 3,455 | 7% | 7 | 0 | 0% | 29 | 0 | 0% |
Western Cape | 5,598 | 11% | 12 | 3 | 25% | 47 | 4 | 9% |
SA Total | 53,102 | 100% | 112 | 9 | 8% | 446 | 10 | 2% |
SA Province | Privately Served Population (‘000) | % of Total Population [30] | Medical Geneticists: | Genetic Counsellors: | ||||
Private | Private | |||||||
Required | Actual | % Capacity | Required | Actual | % Capacity | |||
Eastern Cape | 726 | 7% | 2 | 0 | 0% | 6 | 0 | 0% |
Free State | 427 | 4% | 1 | 0 | 0% | 4 | 1 | 28% |
Gauteng | 3581 | 37% | 8 | 2 | 27% | 30 | 8 | 27% |
KwaZulu-Natal | 1328 | 14% | 3 | 0 | 0% | 11 | 2 | 18% |
Limpopo | 586 | 6% | 1 | 0 | 0% | 5 | 0 | 0% |
Mpumalanga | 503 | 5% | 1 | 0 | 0% | 4 | 0 | 0% |
Northern Cape | 196 | 2% | 0 | 1 | 243% | 2 | 0 | 0% |
North-West | 537 | 6% | 1 | 0 | 0% | 5 | 0 | 0% |
Western Cape | 1870 | 19% | 4 | 1 | 25% | 16 | 7 | 45% |
SA Total | 9752 | 100% | 20 | 4 | 20% | 82 | 18 | 22% |
Public Sector | Private Sector | All Sectors | ||||
---|---|---|---|---|---|---|
Cadre | Current (Required) | Current Capacity | Current (Required) | Current Capacity | Current (Required) | Current Capacity |
Medical Geneticists | 9 (114 a) | 8% | 4 (19 a) | 22% | 13 b (132) | 10% |
Genetic Counsellors | 10 (455 c) | 2% | 18 (74 c) | 24% | 28 d (529) | 5% |
Total | 19 (568) | 3% | 22 (93) | 24% | 41 (661) | 6% |
Age Range | Medical Geneticists | Genetic Counsellors | ||||
Current Age (years) | Number (%) | Public | Private | Number (%) | Public | Private |
26–30 | 0 | 0 | 0 | 8 (29%) | 4 | 4 |
31–35 | 0 | 0 | 0 | 4 (14%) | 3 | 1 |
36–40 | 1 (8%) | 0 | 1 | 4 (14%) | 1 | 3 |
41–45 | 5 (38%) | 4 | 1 | 3 (11%) | 0 | 3 |
46–50 | 1 (8%) | 1 | 0 | 2 (7%) | 0 | 2 |
51–55 | 1 (8%) | 0 | 1 | 5 (18%) | 2 | 3 |
56–60 | 2 (15%) | 1 | 1 | 2 (7%) | 0 | 2 |
60+ | 3 (23%) | 3 | 0 | 0 | 0 | 0 |
Total | 13 | 9 | 4 | 28 | 10 | 18 |
Category & Duration | Estimated Completion | UCT | SU * | Wits | Total |
---|---|---|---|---|---|
MG Registrars | 2024 | 0 | 0 | 1 | 1 |
2025 | 1 | 0 | 0 | 1 | |
2026 | 0 | 1 | 1 | 2 | |
2027 | 0 | 0 | 2 | 2 | |
2028 | 0 | 0 | 2 | 2 | |
2029 | 1 | 0 | 0 | 1 | |
MG Registrars: Sub-total | 2 | 1 | 6 | 9 | |
GC Students | 2024 | 3 | 0 | 5 | 8 |
GC Interns | 2024 | 2 | 0 | 0 | 2 |
2025 | 4 | 0 | 2 | 6 | |
GC Students/Interns: Sub-total | 9 | 0 | 7 | 16 |
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Gomes, M.C.M.; Gomes, B.J.; Christianson, A.L.; Bailly, C.; McKerrow, N.; Malherbe, H.L. A Capacity Audit of Medical Geneticists and Genetic Counsellors in South Africa, 2024: A National Crisis. Genes 2024, 15, 1173. https://doi.org/10.3390/genes15091173
Gomes MCM, Gomes BJ, Christianson AL, Bailly C, McKerrow N, Malherbe HL. A Capacity Audit of Medical Geneticists and Genetic Counsellors in South Africa, 2024: A National Crisis. Genes. 2024; 15(9):1173. https://doi.org/10.3390/genes15091173
Chicago/Turabian StyleGomes, Marianne C. M., Byron J. Gomes, Arnold L. Christianson, Claude Bailly, Neil McKerrow, and Helen L. Malherbe. 2024. "A Capacity Audit of Medical Geneticists and Genetic Counsellors in South Africa, 2024: A National Crisis" Genes 15, no. 9: 1173. https://doi.org/10.3390/genes15091173
APA StyleGomes, M. C. M., Gomes, B. J., Christianson, A. L., Bailly, C., McKerrow, N., & Malherbe, H. L. (2024). A Capacity Audit of Medical Geneticists and Genetic Counsellors in South Africa, 2024: A National Crisis. Genes, 15(9), 1173. https://doi.org/10.3390/genes15091173