Identification of the Ovine Keratin-Associated Protein 22-1 (KAP22-1) Gene and Its Effect on Wool Traits
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sheep Blood and Wool Samples
2.2. Search for an Ovine Homolog of the Human KRTAP22-1 Gene in the Sheep Genome Sequence
2.3. PCR Primers and Amplification of Sheep Genomic DNA
2.4. Screening for Variation in KRTAP22-1
2.5. Sequencing of Allelic Variants and Sequence Analysis
2.6. Statistical Analyses
3. Results
3.1. Identification of KRTAP22-1 in the Sheep Genome
3.2. Detection of Variation in Ovine KRTAP22-1
3.3. Amino Acid Composition of Ovine KAP22-1
3.4. Genotypes and Allele Frequencies in NZ Romney and Merino-Cross Sheep
3.5. Effect of Variation in KRTAP22-1 on Wool Traits
4. Discussion
5. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
References
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SNP | Allele | Amino Acid Change | ||
---|---|---|---|---|
A | B | C | ||
C.-100C/T | C | C | T | 5′UTR |
C.45T/C | T | C | C | No change |
Trait 1 | Variant | n | Mean ± SE 2 | p 3 | ||
---|---|---|---|---|---|---|
Absent | Present | Absent | Present | |||
GFW (kg) | A | 79 | 311 | 2.30 ± 0.07 | 2.33 ± 0.06 | 0.628 |
B | 99 | 291 | 2.37 ± 0.07 | 2.31 ± 0.06 | 0.191 | |
CFW (kg) | A | 79 | 311 | 1.69 ± 0.06 | 1.69 ± 0.05 | 0.931 |
B | 99 | 291 | 1.70 ± 0.05 | 1.69 ± 0.05 | 0.844 | |
Yield (%) | A | 79 | 311 | 72.9 ± 0.99 | 72.0 ± 0.79 | 0.244 |
B | 99 | 291 | 70.8 ± 0.91 | 72.6 ± 0.79 | 0.008 | |
MFD (µm) | A | 79 | 311 | 19.6 ± 0.31 | 19.5 ± 0.25 | 0.705 |
B | 99 | 291 | 19.4 ± 0.30 | 19.6 ± 0.25 | 0.547 | |
FDSD (µm) | A | 79 | 311 | 4.28 ± 0.11 | 4.16 ± 0.09 | 0.139 |
B | 99 | 291 | 4.17 ± 0.10 | 4.19 ± 0.30 | 0.828 | |
CVFD (%) | A | 79 | 311 | 22.0 ± 0.36 | 21.7 ± 0.30 | 0.281 |
B | 99 | 291 | 21.9 ± 0.35 | 21.7 ± 0.30 | 0.503 | |
MSL (mm) | A | 79 | 311 | 84.2 ± 1.99 | 84.6 ± 1.63 | 0.796 |
B | 99 | 291 | 85.5 ± 1.93 | 84.3 ± 1.62 | 0.368 | |
MSS (N/ktex) | A | 79 | 311 | 21.1 ± 1.25 | 23.4 ± 1.02 | 0.192 |
B | 99 | 291 | 21.7 ± 1.21 | 22.2 ± 1.02 | 0.526 | |
MFC (o/mm) | A | 79 | 311 | 86.5 ± 2.43 | 89.4 ± 1.98 | 0.128 |
B | 99 | 291 | 91.6 ± 2.34 | 87.9 ± 1.97 | 0.032 | |
PF (%) | A | 79 | 311 | 2.12 ± 0.36 | 2.05 ± 0.29 | 0.816 |
B | 99 | 291 | 2.13 ± 0.35 | 2.05 ± 0.28 | 0.762 |
Trait 1 | Mean ± SE 2 | p | ||
---|---|---|---|---|
AA (n = 93) | AB (n = 212) | BB (n = 77) | ||
GFW (kg) | 2.38 ± 0.07 | 2.31 ± 0.06 | 2.29 ± 0.07 | 0.341 |
CFW (kg) | 1.71 ± 0.06 | 1.69 ± 0.05 | 1.70 ± 0.06 | 0.918 |
Yield (%) | 70.9 ± 0.97 b | 72.6 ± 0.83 a | 73.0 ± 1.00 a | 0.044 |
MFD (µm) | 19.5 ± 0.31 | 19.6 ± 0.27 | 19.6 ± 0.32 | 0.838 |
FDSD (µm) | 4.20 ± 0.10 | 4.16 ± 0.09 | 4.27 ± 0.11 | 0.385 |
CVFD (%) | 21.9 ± 0.36 | 21.6 ± 0.31 | 21.9 ± 0.37 | 0.321 |
MSL (mm) | 85.9 ± 1.98 | 84.1 ± 1.71 | 84.1 ± 2.03 | 0.488 |
MSS (N/ktex) | 21.8 ± 1.24 | 22.7 ± 1.08 | 21.2 ± 1.28 | 0.306 |
MFC (o/mm) | 91.7 ± 2.45 | 89.0 ± 2.12 | 86.8 ± 2.51 | 0.120 |
PF (%) | 2.46 ± 0.53 | 2.45 ± 0.46 | 3.04 ± 0.55 | 0.387 |
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Li, S.; Zhou, H.; Gong, H.; Zhao, F.; Wang, J.; Liu, X.; Luo, Y.; Hickford, J.G.H. Identification of the Ovine Keratin-Associated Protein 22-1 (KAP22-1) Gene and Its Effect on Wool Traits. Genes 2017, 8, 27. https://doi.org/10.3390/genes8010027
Li S, Zhou H, Gong H, Zhao F, Wang J, Liu X, Luo Y, Hickford JGH. Identification of the Ovine Keratin-Associated Protein 22-1 (KAP22-1) Gene and Its Effect on Wool Traits. Genes. 2017; 8(1):27. https://doi.org/10.3390/genes8010027
Chicago/Turabian StyleLi, Shaobin, Huitong Zhou, Hua Gong, Fangfang Zhao, Jiqing Wang, Xiu Liu, Yuzhu Luo, and Jon G. H. Hickford. 2017. "Identification of the Ovine Keratin-Associated Protein 22-1 (KAP22-1) Gene and Its Effect on Wool Traits" Genes 8, no. 1: 27. https://doi.org/10.3390/genes8010027
APA StyleLi, S., Zhou, H., Gong, H., Zhao, F., Wang, J., Liu, X., Luo, Y., & Hickford, J. G. H. (2017). Identification of the Ovine Keratin-Associated Protein 22-1 (KAP22-1) Gene and Its Effect on Wool Traits. Genes, 8(1), 27. https://doi.org/10.3390/genes8010027