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Article

Crystal Structure of Hydrotalcite Group Mineral—Desautelsite, Mg6MnIII2(OH)16(CO3)·4H2O, and Relationship between Cation Size and In-Plane Unit Cell Parameter

by
Elena S. Zhitova
1,*,
Rezeda M. Sheveleva
1,2,
Anatoly V. Kasatkin
3,
Andrey A. Zolotarev
1,4,
Vladimir N. Bocharov
5,
Anastasia N. Kupchinenko
1 and
Dmitry I. Belakovsky
3
1
Institute of Volcanology and Seismology, Far East Branch of Russian Academy of Sciences, Piipa Blvd. 9, 683006 Petropavlovsk-Kamchatsky, Russia
2
Research Part of the Institute of Geosciences, Saint-Petersburg State University, 199034 Saint-Petersburg, Russia
3
Fersman Mineralogical Museum, Russian Academy of Science, Leninskiy Prospect 18-2, 119071 Moscow, Russia
4
Crystallography Department, Saint-Petersburg State University, Dekabristov 16, 199155 Saint-Petersburg, Russia
5
Geomodel Resource Centre, Saint-Petersburg State University, 198504 Saint-Petersburg, Russia
*
Author to whom correspondence should be addressed.
Symmetry 2023, 15(5), 1029; https://doi.org/10.3390/sym15051029
Submission received: 3 April 2023 / Revised: 25 April 2023 / Accepted: 30 April 2023 / Published: 5 May 2023
(This article belongs to the Special Issue Symmetry in Inorganic Crystallography and Mineralogy)

Abstract

:
The crystal structure of a naturally occurring layered double hydroxide mineral—desautelsite from San Benito County, California, USA—was refined using single-crystal X-ray diffraction data in the space group R-3m, a = 3.1238(2) Å, c = 23.528(3) Å, V = 198.83(4) Å3, and Z = 3/8. The Mg and Mn cations are disordered occurring in one M site with occupancy Mg0.77Mn0.23. According to the electron microprobe analysis supported by Raman spectroscopy, the empirical formula is Mg6.20(MnIII1.78Al0.01FeIII0.01)Σ1.80(OH)16(CO3)0.90·5.35H2O that shows higher content of interlayer (H2O) molecules in comparison to the ideal formula that also agrees with the structure refinement. The Raman spectroscopy of two samples indicated O–H vibrations (3650/3640 cm−1, ~3500 sh cm−1), symmetric C–O (1055/1057 cm−1), Mg–O–Mg (533/533 cm−1) and Mn–O–Mn (439/438 cm−1) stretching vibrations and lattice vibrations (284/287 cm−1). Summing up our data and that of the current literature, we show a correlation (R2 = 0.91) between the averaged effective ionic radius (x) and a unit cell parameter (y) of hydrotalcite group minerals, y = 1.9871 x + 1.4455 . Desautelsite follows this correlation, being the species with one of the largest a unit cell parameters among the group. The correlation can be applied for control of cation intercalation during synthesis.

1. Introduction

Layered double hydroxides (LDHs) represent a class of anion-exchange materials with various catalytic, pharmaceutical, electrochemical and other applications [1,2,3,4,5,6,7]. Their crystal structures are built of positively charged metal-hydroxide layers [MII1−xMIIIx(OH)2]x+ (in the case of di- and trivalent LDHs) and negatively charged interlayers [(An)x/n·yH2O]x, where MII and MIII are di- and trivalent cations, A is an anion of n charge, x is variable with x = 0.33 and x = 0.25 being the most widespread values (x = 0.33 is considered the upper limit; the lower limit is not determined but likely 0.143 (by appearance of questionable mineral brugnatellite) or above), and y is variable. Among synthetic artificially obtained phases, there are hundreds of LDHs of various compositions [8], which are obtained by combining various divalent and trivalent cations and anions, and anions can also represent inorganic species or organic molecules [9]. The number of minerals, i.e., layered double hydroxides formed under completely natural conditions, is much more limited and amounts to about 50 phases (including very newly approved, but not published minerals) forming the hydrotalcite supergroup [10]. These minerals can be considered stable long-lived prototype phases, which often occur in crystals, and their growth is not limited by time. Such crystals can be subjected to a number of methods of investigation (including single-crystal X-ray diffraction), which are unsuitable for synthetic fine-grained phases.
Desautelsite, Mg6MnIII2(OH)16(CO3)·4H2O, is described as a pyroaurite-related mineral from the Cedar Hill quarry, Lancaster county, Pennsylvania (type locality) and two localities in San Benito County, CA, USA [11] where it forms at the last stage of mineral formation in fractured serpentinites. The mineral occurs as tabular hexagonal crystals of a rather specific, for hydrotalcite-supergroup minerals, bright orange colour (Figure 1). Desautelsite has also been described in detail from Konomori, Kochi City, Japan where a desautelsite-bearing fissure is found in fractured serpentinites of ultrabasic rocks, and the mineral is supposedly found in five other places in Japan [12]. Desautelsite belongs to the hydrotalcite group that combines species with MII:MIII~3:1 and (CO3)2−, Cl and (OH) anions [10]. Desautelsite is a MnIII-analogue of hydrotalcite, pyroaurite and stichtite.
The crystal structure of desautelsite has been previously determined based on the material from San Benito County, CA, USA [11] in R3m or R-3m space group, with a = 3.114(1), c = 23.39(2) Å, V = 196.4 Å, and Z = 3/8. The crystal structure has been described as consisting of octahedral sheets with Mg and Mn being disordered (found in one site) and statistically disordered interlayer species of (CO3)2− and (H2O)0 sandwiched between them. However, authors noted [11] that due to the expected Jahn-Teller distortion of MnIII(OH)6 octahedra coupled with the difference in the ionic charge and radius between MgII and MnIII, the ordering of Mg and Mn cations could be expected, but this was not registered and can be short-range in the nature. Despite the fact that desautelsite is a rare example, when the crystal structure is solved and refined based on data obtained by a reliable and accurate single-crystal X-ray diffraction method, the speculations on the absence or presence of long-range ordering of Mg and Mn, and hence on the symmetry of the mineral, remained [13,14]. In the 44 years that have passed since the structural study of desautelsite, analytical equipment has made great strides forward, which, for example, made it possible to determine the crystal structures of LDH with cationic [15,16,17,18,19,20] and/or anionic [21,22,23,24] ordering using single-crystal X-ray diffraction data. Recently, using the example of hydrotalcite, Mg6Al2(OH)16(CO3)·4H2O, it has been shown that there is no long-range order for Mg and Al in octahedral sheets [25]. Despite the fact that hydrotalcite is an important mineral as it is the archetype of the supergroup [10], Mg and Al cations have a similar scattering power which theoretically could complicate the identification of potential superstructures. The very specific thing about desautelsite is its chemistry since this is the only hydrotalcite-supergroup mineral with MnIII and it is still not entirely clear whether this peculiarity of the chemical composition may affect its crystal structure. Thus, MgII and MnIII cations differ much more in terms of scattering power, size and specificity owing to the Jahn-Teller distortion of Mn-centred octahedra. Accordingly, desautelsite is an interesting object among LDHs for structural determination and refinement. In this study we provide the re-investigation of desautelsite from San Benito County, CA, USA by electron microprobe analysis, Raman spectroscopy, and powder and single-crystal X-ray diffraction that is required for modern mineral characterization and identification in order to reveal its internal atomic structure. Then, using the data obtained in the work and previously published data for LDH minerals, the relationship between the effective ionic radius (crystal radius by [26]) and the in-plane a unit cell parameter is shown.

2. Materials and Methods

2.1. Materials

In this study, we investigated two desautelsite samples found in nature: (1) from the systematic collection of the Fersman Mineralogical Museum of the Russian Academy of Science (Moscow) under catalog number 80137 and (2) from the personal collection of AVK (third author) denoted as 29D. Both specimens originate from the Artinite Pit, Picacho Peak, San Benito County, CA, USA (Latitude and Longitude (WGS84): 36° North, 120° West) [27]. Specimen 80137 was obtained by exchange with Excalibur Mineral Co, in 1979. Desautelsite is represented by orange-brown patches consisting of aggregates of thin plates on serpentine associating with white sprays of artinite. The specimen looks like the typical material from Artinite Pit, Picacho Peak, San Benito County, CA, USA and most likely was collected there, while the locality on the label is given as «near Gem Mine, San Benito County, CA, USA». The Artinite Pit is about 5 miles from the gem mine made famous by classic specimens of benitoite and neptunite.
Both samples occur as hexagonal platy crystals forming rosette-like aggregates (Figure 2). In sample 29D, desautelsite occurs as an orange crust composed of hexagonal lamellar crystals up to 0.05 mm on serpentinite rock in association with white radiating sprays of artinite (Figure 1). The matrix consists of dominant lizardite with calcite, siderite, andradite and tiny awaruite inclusions (Figure 3).

2.2. Methods

2.2.1. Chemical Analysis

Sample 80137 was placed on carbon tape (Figure 2), carbon-coated and subjected to investigation by a scanning electron microscope Hitachi S-3400N equipped with an Oxford X-Max 20 energy-dispersive spectrometer (Geomodel Center of St. Petersburg State University) operating in the energy dispersive spectroscopy (EDS) mode at an accelerating voltage of 20 kV, a beam current of 0.5 nA; the electron beam diameter was 5 μm. The standards used for quantification were MgO (Mg) and Mn (Mn).
Sample 29D was placed in epoxy resign, polished (Figure 3), carbon-coated and studied with a Hitachi FlexSEM 1000 scanning electron microscope equipped with EDS Xplore Contact 30 detector and Oxford AZtecLive STD system of analysis. Analytical conditions were accelerating voltage 15 kV, beam current 5 nA and beam size 2 μm. The standards are given in Table 1.

2.2.2. Raman Spectroscopy

The Raman spectrum of desautelsite was obtained with a Horiba Jobin-Yvon LabRam HR800 spectrometer, equipped with a solid-state laser (λ = 532 nm) at 50 mW output power and ∼6 mW power at the sample surface for an area of 2 μm × 2 μm. The spectrum was recorded at room temperature from randomly oriented desautelsite rosette-like aggregates placed on a glass slide and was further processed using LabSpec (Horiba) and Origin (Origin lab corp, Northhampton, MA, USA) software.

2.2.3. Powder X-ray Diffraction

Powder X-ray diffraction (XRD) data were collected by means of a Rigaku R-Axis Rapid II single-crystal diffractometer using Debye-Scherrer geometry (source: CoKα, λ = 1.79026 Å, voltage = 40 kV and current = 15 mA, d = 127.4 mm). The diffractometer is equipped with a rotating anode, microfocus optics and a cylindrical image plate detector.

2.2.4. Single-Crystal X-ray Diffraction

Single-crystal X-ray diffraction analysis was carried out for desautelsite sample 29D using a four-circle diffractometer Rigaku XtaLAB Synergy-S (Oxford Diffraction, Japan) operated with a monochromated MoKα radiation (source: MoKα, λ = 0.71073 Å) at 50 kV and 1.0 mA and equipped with a CCD HyPix-6000HE detector. The scan width was 1.0°, exposition was 140 s (long exposure is characteristic of LDHs because they are normally thin, relatively weakly diffracting samples). The CrysAlisPro [29] software package was used to process the data; an empirical absorption correction was calculated based on spherical harmonics implemented in the SCALES ABSPACK algorithm.

3. Results

3.1. Chemical Composition

Ten chemical analyses were obtained for sample 80137 from an unpolished surface. Only Mg and Mn cations were found (with no detected impurities). The anion is represented by a carbonate group, and only traces of Cl registered. These results allowed the calculation of Mg:Mn proportion as ~6.2:1.8.
More detailed chemical data were obtained for sample 29D (that according to powder X-ray diffraction was pure of intimately associated phases, see Section 3.3) which was polished. Desautelsite was stable in a vacuum; no signs of dehydration or cracking were detected under the beam. All analyses of measured components (metal oxides) were confined to 58–59 wt.%. The results of the electron microprobe analysis for sample 29D are given in Table 1. The mineral is homogeneous in element distribution (Figure 3). Data from 11 chemical analyses of the desautelsite (sample 29D) were averaged to calculate the chemical formula of the sample. The empirical formula calculated on the basis of the sum of all metal cations = 8 apfu (atom per formula unit) and OH = 16 apfu is Mg6.20(MnIII1.78Al0.01FeIII0.01)Σ1.80(OH)16(CO3)0.90·5.35H2O.
This study shows that both samples are identical in chemical composition even including the Mg:Mn ratio.

3.2. Raman Spectroscopy

The Raman spectra of desautelsite are given in Figure 4, and the band assignment and its comparison to the literature sources are given in Table 2. In general, the Raman spectra of desautelsite are similar to the spectra measured previously for that mineral and also for stichtite and pyroaurite (Table 2). The spectra comprise bands assigned to the following vibrations: O–H stretching, antisymmetric and symmetric vibrations of C–O in CO3 group, Mg–O–Mg and Mn–O–Mn vibrations and those produced by the lattice. The data also allow the conclusion that the interlayer anion is represented by a CO3 group, while other functional anion groups are absent.

3.3. Powder X-ray Diffraction

The data were integrated using the software package Osc2Tab/SQRay [34]. In Figure 5 we provide the powder X-ray diffraction patterns of both desautelsite samples. This study has shown that the selected fragment from sample 29D is represented solely by desautelsite, whereas the fragment from sample 80137 is found in intimate association with lizardite, Mg3(Si2O5)(OH)4, and dashkovaite, Mg(HCOO)2·2H2O. The obtained interplanar distances d (Å) and hkl indices of studied samples and comparison of these values to the type specimen [11] are given in Table 3. Both desautelsite samples crystallize as 3R polytypes, the unit-cell parameters based on reflections position for samples 29D/80137 are a = 3.122/3.119 Å, and c = 23.46/23.49 Å, respectively. Both desautelsite samples studied in this work have very similar unit-cell parameters that are somewhat different for type material (estimated by the powder X-ray diffraction data given in Table 3) that have a = 3.114(1) Å, and c = 23.39(2) Å.

3.4. Crystal Structure Solution and Refinement

The single-crystal X-ray diffraction data obtained for desautelsite were indexed in the rhombohedral unit cell, space group R-3m (Table 4). The crystal structure was solved and refined to R1 = 0.038 based on 116 unique observed reflections with I > 2σ(I). Atom coordinates, site occupancies and isotropic displacement parameters are given in Table 5. Selected bond lengths and angles are listed in Table 6. The crystallographic information file (cif) has been deposited via the joint Cambridge Crystal Data Centre CCDC/FIZ Karlsruhe deposition service; the deposition number is 2251692.
Positions of metal and oxygen of the metal-hydroxide layer were determined by direct methods and refined anisotropically (Table S2). The interlayer species (O and C) and hydrogen atoms were located from the inspection of difference-Fourier maps. Site occupancies of O1 of metal-hydroxide layers were found to be close to 100% and fixed, while the occupancy of M site was fixed in accord with the chemical composition. The occupancy of C site has been fixed in accord with the charge balance. The refinement of site occupancies of interlayer oxygen atoms has shown an excess of electrons per formula unit (epfu) that was treated as an excess of H2O molecules. The hydrogen atoms were localized from residual electron-density maps and refined using a riding model with Ueq values restrained as 1.5 of donor O atom. The hydrogen atoms of the interlayer cannot be localized because of the high statistic disorder of the H2O molecules and carbonate groups.

4. Discussion

4.1. Crystal Structure

The crystal structure of desautelsite is built out of edge-shared octahedra M(OH)2 (M = Mg0.77Mn0.22) forming the octahedral sheet. The interlayer C atoms are located in the center of a prism built by H atoms of two neighboring octahedral sheets [35], while the interlayer O atoms of (CO3)2− group and (H2O)0 molecules are disordered around the prism edge (Figure 6). The interlayer C and O atom sites are low-occupied and statistically disordered, thus interlayer H atoms cannot be localized. The layers are stacked by rhombohedral periodicity producing the 3R polytype that is typical for hydrotalcite group minerals (Table 7). The powder X-ray diffraction pattern recorded from larger samples has also shown only the 3R polytype of desautelsite and the absence of any superstructure reflections. A similar situation with 3R polytype findings is also characteristic for Fe3+-analogues of desautelsite: pyroaurite and iowaite (Table 7).
Our data on the crystal structure of desautelsite completely agrees with those obtained previously [11] in terms of crystal structure topology. Thus, we confirm that the arrangement of MgII and MnIII within an octahedral sheet should be realized in terms of short-range order. It is worth noting that the absence of MII and MIII cation ordering agrees with all recent crystal structure studies of minerals from the hydrotalcite group constructing a hydrotalcite supergroup (Table 7). Therefore, it seems that the nature of the divalent and trivalent cations in this case does not affect the way they are located inside the layer, while the cation ratio MII:MIII is decisive. At the same time, as noted in the Introduction section, cation ordering occurs in minerals belonging to the quintinite, cualstibite, wermlandite, fougèrite and hydrocalumite groups of the hydrotalcite supergroup having another stoichiometry and, in particular, a MII:MIII cation ratio.

4.2. Chemical Composition

The electron microprobe analysis allowed us to determine the empirical formula of the desautelsite under study as Mg6.20(MnIII1.78Al0.01FeIII0.01)Σ1.80(OH)16(CO3)0.90·5.35H2O. When compared to the idealized chemical formula of desautelsite, Mg6MnIII2(OH)16(CO3)1.0·4H2O, the samples under study have a higher MII:MIII ratio of 3.4:1 (Table 1). The chemical composition study suggested a higher content of interlayer H2O molecules: 5 apfu instead of 4 apfu based on measured totals and their consistency. The crystal structure refinement has also indicated a higher content of interlayer H2O molecules by the occupancy of the interlayer O2 site (Table 5). The higher content of interlayer (H2O) molecules may be due to a higher ratio of MII:MIII when compared to the ideal stoichiometry. The Raman spectroscopy of desautelsite samples has shown the presence of only the (CO3)2− anion in the interlayer (Table 2).

4.3. Octahedral Sheet: Chemistry, Cation Radii and Octahedra Distortion

From the crystal structure refinement, we can conclude that for hydrotalcite group minerals, MII and MIII cations are disordered (in terms of long-range structure) despite the nature of MII (Mg, Ni) and MIII (Al, Fe, Mn, Cr, Co) cations. However, the nature of cations should affect geometrical parameters of the crystal structure, such as M–O bond length, polyhedral size and, thus, interplanar a unit cell parameter (Figure 7). In order to estimate this quantitatively, we have calculated the averaged crystal radius that is the type of effective ionic radius [26] as
a v e r a g e d   c r y s t a l   r a d i u s = a p f u   o f   c a t i o n × c a t i o n   r a d i u s a p f u   o f   c a t i o n
The crystal radii of cations are taken from [26], the cation apfu (contents) are taken from Table 7. For example, for the desautelsite described by [11] the averaged cation radius of metals constructing octahedral sheet is calculated as 6 × 0.86 + 2 × 0.785 ÷ 8 = 0.8413 (where 6-apfu for Mg, 2-apfu for MnIII, 0.86-crystal radius of Mg, 0.785-crystal radius of MnIII, 8-apfu for cation sum). This averaged cation radius can be correlated to the in-plane a parameter of the unit cell providing predictive power: the a unit cell parameter can be calculated from the chemical composition and compared to the correlation and vice versa that allows, for instance, control of cation intercalation in synthetic LDHs. The experimentally obtained correlation, y = 1.987x + 1.4455 (where ya unit cell parameter and x—averaged cation radius) (Figure 7) is based on 11 well-characterized natural samples (see references in Table 7 and Figure 7) and shows good agreement with R2 = 0.91 (R2 is the goodness of fit for linear correlation). The strongest deviation from the approximated line is observed for pyroaurite, possibly because the precise determination of the MII:MIII ratio is problematic since some minor Fe may be in divalent form. However, this deviation does not extend to iowaite which is identical to pyroaurite in cation contents and their ratio, i.e., Mg:FeIII = 3:1. The deviation from approximation is also observed for reevesite (Figure 7), which is because the mineral has slightly variable cation content, and the unit-cell parameters are calculated for the general sample and not for precise chemical variety. Desautelsite agrees well with the approximation being the end-member with the highest a unit cell parameter, due to the presence of the large trivalent cation (MnIII) in its chemical composition that is comparable to FeIII that, in turn, is the dominant trivalent cation in pyroaurite and iowaite (Figure 7). In general, natural LDHs can be model systems for constructing such correlations between the geometric parameters of the crystal structure and the chemical composition of the mineral, and can easily be approximated to synthetics, which require simple and high-quality control over the chemical composition. Obviously, the weak crystal-chemical characteristics of many minerals of the hydrotalcite supergroup, including the hydrotalcite group itself (Table 7), still remain a problematic side.

5. Conclusions

The crystal structure refinement has indicated that desautelsite crystallizes as a classic 3R polytype with MgII and MnIII being disordered (in terms of long-range order) and occupying one M site, Mg0.77Mn0.23. The arrangement of Mg and Mn within an octahedral sheet should be short-range ordered in nature. The important outcome is that for hydrotalcite group minerals having MII:MIII = 3:1, the cation organization within metal-hydroxide sheets seems to be determined by the cation ratio rather than specific (or the nature of) di- and trivalent cations. The interlayer species are located in-between two octahedral sheets: C atoms occupy the center of the trigonal prism, while O atoms of (H2O)0 and (CO3)2− are disordered around the prism edge. The topology of desautelsite corresponds to the classic 3R polytype (with carbonate interlayer) which also extends at least to hydrotalcite group minerals with recently refined structures such as hydrotalcite, pyroaurite, stichtite and kaznakhtite.
The available literature and our data make it possible to construct a correlation between the cation size and the unit cell parameter a. The latter is quite easy to calculate from routine X-ray powder diffraction data. Using the provided correlation [between the averaged cation effective ionic radius (crystal radius in accord with Shannon) (x) and a unit cell parameter (y), y = 1.9871 x + 1.4455 ], the a unit cell parameter can be related to the chemical composition of the LDH compound. In practice, this would be useful for checking isomorphic substitution (especially in the case of cations of different sizes) or for monitoring the compliance of the MII:MIII ratio with the assumed value. In this case, it is natural LDHs that can serve as model systems for constructing such correlations since they form crystals and, due to this, it is easier to characterize them from the structural and chemical point of view.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/sym15051029/s1, Table S1: powder X-ray diffraction data for desautelsite sample 80137 including reflections of lizardite and dashkovaite and Table S2: anisotropic displacement parameters (Å2) for desautelsite.

Author Contributions

Conceptualization, E.S.Z.; methodology, E.S.Z., A.V.K. and V.N.B.; software, E.S.Z., R.M.S., A.A.Z. and V.N.B.; validation, E.S.Z., R.M.S., A.V.K., A.A.Z., V.N.B., A.N.K. and D.I.B.; formal analysis, E.S.Z., R.M.S., A.V.K., V.N.B. and A.N.K.; investigation, E.S.Z., R.M.S., A.A.Z., V.N.B. and A.V.K.; resources, A.V.K. and D.I.B.; data curation, A.A.Z., V.N.B., A.V.K. and D.I.B.; writing—original draft preparation, E.S.Z., R.M.S., V.N.B. and A.V.K.; writing—review and editing, E.S.Z., R.M.S., A.A.Z., V.N.B., A.V.K., A.N.K. and D.I.B.; visualization, E.S.Z., R.M.S., V.N.B. and A.N.K.; supervision, E.S.Z., A.A.Z. and A.V.K.; project administration, E.S.Z.; funding acquisition, E.S.Z. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Russian Science Foundation, grant number 22-77-10036.

Data Availability Statement

The crystallographic information file (cif) has been deposited via the joint Cambridge Crystal Data Centre CCDC/FIZ Karlsruhe deposition service; the deposition number is 2251692.

Acknowledgments

The technical support of St. Petersburg State University Resource Centers “XRD” and “Geomodel” is gratefully acknowledged. We thank Natalia Vlasenko for the preliminary electron-microprobe data.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Orange desautelsite and white artinite on serpentinite rock. Sample 29D. Photo size is 6 × 4 × 3 cm.
Figure 1. Orange desautelsite and white artinite on serpentinite rock. Sample 29D. Photo size is 6 × 4 × 3 cm.
Symmetry 15 01029 g001
Figure 2. Back-scattered electron image of desautelsite forming hexagonal plates. Sample 80137.
Figure 2. Back-scattered electron image of desautelsite forming hexagonal plates. Sample 80137.
Symmetry 15 01029 g002
Figure 3. Cross-sections of lamellar desautelsite (Des) crystals overgrowing calcite (Cal) and lizardite (Lz) with andradite (Adr) and siderite (Sd). Scanning-electron microscopy image was obtained in back-scattered electrons. Mineral symbols are by [28]. Sample 29D.
Figure 3. Cross-sections of lamellar desautelsite (Des) crystals overgrowing calcite (Cal) and lizardite (Lz) with andradite (Adr) and siderite (Sd). Scanning-electron microscopy image was obtained in back-scattered electrons. Mineral symbols are by [28]. Sample 29D.
Symmetry 15 01029 g003
Figure 4. Raman spectra of desautelsite, sample 80137 (a) and sample 29D (b).
Figure 4. Raman spectra of desautelsite, sample 80137 (a) and sample 29D (b).
Symmetry 15 01029 g004
Figure 5. Powder X-ray diffraction pattern of desautelsite: (a) sample 29D and (b) sample 80137, where desautelsite is found in close association with lizardite, Mg3(Si2O5)(OH)4, and dashkovaite, Mg(HCOO)2·2H2O.
Figure 5. Powder X-ray diffraction pattern of desautelsite: (a) sample 29D and (b) sample 80137, where desautelsite is found in close association with lizardite, Mg3(Si2O5)(OH)4, and dashkovaite, Mg(HCOO)2·2H2O.
Symmetry 15 01029 g005
Figure 6. The crystal structure of desautelsite (a) and the projection of one octahedral sheet (z = 0) and superimposed interlayer (z = 1/6) (b). The unit-cell is outlined. Octahedra—(Mg0.77Mn0.22)(OH)2, O—red, H—white, C—brown. Sectors indicate site occupancy.
Figure 6. The crystal structure of desautelsite (a) and the projection of one octahedral sheet (z = 0) and superimposed interlayer (z = 1/6) (b). The unit-cell is outlined. Octahedra—(Mg0.77Mn0.22)(OH)2, O—red, H—white, C—brown. Sectors indicate site occupancy.
Symmetry 15 01029 g006
Figure 7. The correlation between averaged cation radii of metals constructing the octahedral sheet and the in-plane a unit cell parameter for hydrotalcite group minerals using data reported therein and in [11,25,31,32,36,37,39,41,42]. Note: the data without chemical composition are not included; droninoite [43] is omitted since Fe2+/Fe3+ is not known.
Figure 7. The correlation between averaged cation radii of metals constructing the octahedral sheet and the in-plane a unit cell parameter for hydrotalcite group minerals using data reported therein and in [11,25,31,32,36,37,39,41,42]. Note: the data without chemical composition are not included; droninoite [43] is omitted since Fe2+/Fe3+ is not known.
Symmetry 15 01029 g007
Table 1. Chemical composition of desautelsite, sample 29D.
Table 1. Chemical composition of desautelsite, sample 29D.
Constituentwt.%RangeStand. Dev.Standards
MgO37.2335.47–38.601.08Mg2SiO4
Al2O30.040.02–0.180.06Kyanite
Mn2O320.9020.47–21.270.32Mn2SiO4
Fe2O30.090.02–0.180.05FeS2
CO2 15.90
H2O 235.84
Total100.00
1 Calculated by charge balance; 2 calculated from deficiency of analytical total.
Table 2. Results of Raman spectroscopic analysis of desautelsite and their comparison to the literature data.
Table 2. Results of Raman spectroscopic analysis of desautelsite and their comparison to the literature data.
DesautelsitePyroauriteStichtiteAssignment
8013729D[30][31][32]
365036403646, 36083600–35003593O–H stretching of OH groups
~3500 sh~3500 sh3509, 3409, 3325~3300 sh~3300 shO–H stretching of H2O molecules
--1393, 1349, 13421346-Antisymmetric stretching vibrations of CO3 group
105510571086, 1062, 105510581057, 1017Symmetric stretching vibrations of CO3 group
533533535527534Mg–O–Mg [33]
439438455, 436, 422-460Mn–O–Mn (desautelsite)
Cr–O–Cr (stichtite)
--313-316Lattice vibrations
284287281284288
Table 3. Powder X-ray diffraction data for two desautelsite samples compared with holotype data.
Table 3. Powder X-ray diffraction data for two desautelsite samples compared with holotype data.
Sample 29DSample 80137 1Literature Data [11]hkl
dmeas (Å)Imeas (%)dmeas (Å)Imeas (%)dmeas (Å)Imeas (%)
7.821007.831007.76100003
3.916273.915293.8860006
2.6361132.6320212.62250012
2.3444132.3427182.33260015
1.9897101.9889141.98160018
1.773921.773331.768201010
1.675821.675921.670200111
1.561261.559781.55720110
1.530971.5306101.52730113
1.503911.502221.498301013
1 Only desautelsite reflections are presented, while dashkovaite and lizardite reflections (see Figure 5) are omitted; the full data set is provided in Table S1.
Table 4. Crystal data, data collection, and structure refinement details for desautelsite.
Table 4. Crystal data, data collection, and structure refinement details for desautelsite.
Crystal Chemical Data
Crystal systemTrigonal
Space groupR-3m
a (Å)3.1238(2)
c (Å)23.528(3)
V3)198.83(4)
Z0.375
Calculated density (g/cm3)2.111
Absorption coefficient (mm−1)1.367
Crystal fromHexagonal plate
Crystal size (μm)30 × 30 × 10
Data collection
DiffractometerRigaku XtaLAB Synergy-S
Temperature (K)293
Radiation, wavelength (Å)MoKα, 0.71073
Range of data collection, θ (°)5.199–32.598
h, k, l ranges−4→4, −4→4, −33→33
Total reflection collected1048
Unique reflections (Rint)121 (0.0386)
Number of unique reflections F > 2σ(F)116
Data completeness (%)98.5
Structure refinement
Refinement methodFull-matrix least-squares on F2
Weighting coefficients a, b0.055400, 0.373000
Data/restrain/parameters121/2/13
R1 [F > 2σ(F)], wR2 [F > 2σ(F)]0.0386, 0.1063
R1 all, wR2 all0.0395, 0.1067
Goodness-of-fit on F21.276
Largest diff. peak and hole (ēÅ−3)0.78, −0.23
Table 5. Atom coordinates, equivalent isotropic displacement parameters (Å2), site occupancies and assigned site populations for desautelsite.
Table 5. Atom coordinates, equivalent isotropic displacement parameters (Å2), site occupancies and assigned site populations for desautelsite.
AtomxyzUeqs.o.f.Assigned Site Populations
Octahedral sheet
M (Mg)100 0.0158(5)0.772 *Mg0.77Mn0.23(OH)2
M (Mn)100 0.0158(5)0.224 *
O11.33331/3 0.04335(11) 0.0197(6)1 *
H11.33331/30.0806(13)0.0301 *
Interlayer gallery
O21.222(2) −0.222(2) 0.1664(17)0.078(7) 0.186(8) (CO3)0.88(H2O)5 **
C1100.163(3) 0.030(15)0.0545 *
* Fixed during refinement; ** the electron per formula unit (epfu) for O2 site is recalculated as (H2O)0, the deviation in the calculation of (H2O)0 content by structure refinement is quite high and we believe that in fact the (H2O)0 content is close to the data of the electron microprobe analysis, i.e., ~5.3 apfu.
Table 6. Selected bond distances (Å) for desautelsite including hydrogen bonding scheme.
Table 6. Selected bond distances (Å) for desautelsite including hydrogen bonding scheme.
AtomAtomBond
Distance
AtomAtomBond
Distance
MO12.0719(13)CO21.593(6)
D–Hd(D–H)d(HA)<DHAd(DA)A
O1-H10.88(4)2.11(5)163.3(5)2.96(4)O2
Table 7. Symmetry, polytype and unit-cell parameters of hydrotalcite group minerals.
Table 7. Symmetry, polytype and unit-cell parameters of hydrotalcite group minerals.
MineralEmpirical Chemical FormulaSpace GroupPolytypea, Åc, ÅV, Å3Comment 1Reference
DesautelsiteMg6.20(MnIII1.78Al0.01FeIII0.01)(OH)16(CO3)0.90·5.35H2OR-3m3R3.12423.528198.8SCThis work, 29D
Mg6.18MnIII1.82(OH)16(CO3)1·nH2OR-3m3R3.11923.49197.9PThis work, 80137
Mg6MnIII2(OH)16(CO3)1·4H2OR3m or
R-3m
3R3.11423.390194.4SC[11]
HydrotalciteMg5.88Al1.82Fe3+0.30(OH)16(CO3)1.06·4H2OR-3m3R3.07323.326190.7SC[25]
Mg5.87Al2.10Fe3+0.02(OH)16(CO3)1.06·4H2OP63/mmc2H3.04615.477124.4
PyroauriteMg6.08Fe3+1.76Al0.17(OH)16(CO3)1.00·4H2OR-3m3R3.12623.520199.0SC[31]
Mg5.95Mn0.05Fe3+2.00(OH)16(CO3)1.00·4H2OR-3m3R3.10123.340194.3SC
Iowaite(Mg5.9Fe2+0.1)Fe3+2(OH)16[Cl1.4(OH)0.48(CO3)0.06] ·4H2OR-3m3R3.11824.113203.1SC[36]
Mg6.11(Fe3+0.85Cr0.78Al0.26)(OH)16Cl1.82·4H2OR-3m3R3.11024.120202.0P[32]
P63/mmc2H3.11016.080134.7P
Mg6.02Fe3+1.67Al0.31(OH)16.00Cl1.67(BO3)0.11·4H2OR-3m3R3.10823.885199.8SC[37]
Stichtite
Fe3+-rich
Mg6(Cr0.86Fe3+0.85Al0.29)(OH)16(CO3)·4H2OR-3m3R3.10023.550196.4P[32]
P63/mmc2H3.10015.700130.9P
Stichtiten.g., possibly close to ideal Mg6Cr2(OH)16(CO3)·4H2OR-3m3R3.09623.507195.1P[38]
P63/mmc2H3.09715.619129.7P
P63/mmc2H3.09615.627129.8P
WoodalliteMg6.19(Cr1.21Fe0.51Al0.15)(OH)16[Cl1.62(CO3)0.17(SO4)0.01]·4H2OR-3m3R3.10324.111201.1P[39]
n.g.R-3m3R3.10123.682197.2P[40]
Kaznakhtite(Ni5.54Mg0.47Zn0.02)(Co3+1.83Cr0.11Al0.03)(OH)15.84C1.00O2.99Cl0.16⋅4H2OR-3m3R3.05223.180186.9P[41]
Reevesite(Ni5.837Mg0.106)(Fe3+1.804Co3+0.189)(OH)16(CO3)0.92(SO4)0.076nH2On.g.
R-3m(?)
n.g.
3R
3.085 23.355192.5P[42]
Takoviten.g. 2 ?R-3m3R3.02922.599179.6SC[40]
Droninoite(Ni2.16Fe2+0.75Fe3+0.97)(OH)7.10 Cl1.62⋅2.28H2O 3R-3m?6.206 346.1841540.4P[43]
MeixneriteMg6(Al1.95Fe3+0.05)(OH)16(OH)2⋅4H2OR-3m3R3.04622.930184.2P[44]
1 Unit-cell parameter determination using SC—single-crystal X-ray diffraction and P—powder X-ray diffraction. 2 The empirical chemical formula is not provided; the ideal chemical formula of takovite is Ni6Al3+2(OH)16(CO3)∙4H2O; however, the experimentally determined occupancies indicate Ni:Al~2:1 rather than 3:1. 3 Fetot has been calculated [43] based on the condition that MII:MIII = 3:1; the a and c parameters are likely doubled since no superstructure reflections are reported leading to a = 3.103 Å and c = 23.092 Å in resemblance to other hydrotalcite group minerals; and the polytype is likely classic 3R. Note: n.g.—not given.
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Zhitova, E.S.; Sheveleva, R.M.; Kasatkin, A.V.; Zolotarev, A.A.; Bocharov, V.N.; Kupchinenko, A.N.; Belakovsky, D.I. Crystal Structure of Hydrotalcite Group Mineral—Desautelsite, Mg6MnIII2(OH)16(CO3)·4H2O, and Relationship between Cation Size and In-Plane Unit Cell Parameter. Symmetry 2023, 15, 1029. https://doi.org/10.3390/sym15051029

AMA Style

Zhitova ES, Sheveleva RM, Kasatkin AV, Zolotarev AA, Bocharov VN, Kupchinenko AN, Belakovsky DI. Crystal Structure of Hydrotalcite Group Mineral—Desautelsite, Mg6MnIII2(OH)16(CO3)·4H2O, and Relationship between Cation Size and In-Plane Unit Cell Parameter. Symmetry. 2023; 15(5):1029. https://doi.org/10.3390/sym15051029

Chicago/Turabian Style

Zhitova, Elena S., Rezeda M. Sheveleva, Anatoly V. Kasatkin, Andrey A. Zolotarev, Vladimir N. Bocharov, Anastasia N. Kupchinenko, and Dmitry I. Belakovsky. 2023. "Crystal Structure of Hydrotalcite Group Mineral—Desautelsite, Mg6MnIII2(OH)16(CO3)·4H2O, and Relationship between Cation Size and In-Plane Unit Cell Parameter" Symmetry 15, no. 5: 1029. https://doi.org/10.3390/sym15051029

APA Style

Zhitova, E. S., Sheveleva, R. M., Kasatkin, A. V., Zolotarev, A. A., Bocharov, V. N., Kupchinenko, A. N., & Belakovsky, D. I. (2023). Crystal Structure of Hydrotalcite Group Mineral—Desautelsite, Mg6MnIII2(OH)16(CO3)·4H2O, and Relationship between Cation Size and In-Plane Unit Cell Parameter. Symmetry, 15(5), 1029. https://doi.org/10.3390/sym15051029

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