Classification of Atypical White Blood Cells in Acute Myeloid Leukemia Using a Two-Stage Hybrid Model Based on Deep Convolutional Autoencoder and Deep Convolutional Neural Network
Abstract
:1. Introduction
- A new WBC augmentation model called “the GT-DCAE WBC augmentation model” is developed by combining a geometric transformation model and a generative model by using deep convolutional autoencoder.
- A new model for classifying atypical white blood cells (WBCs) that includes immature WBCs and atypical lymphocytes is created. This model is called “the Two-stage DCAE-CNN atypical WBC classification model”, and it uses a combination of a deep convolutional autoencoder and a convolutional neural network.
- The newly proposed model is a context-free generalized model that incorporates only features associated with WBCs and excludes other blood components.
2. Related Work
3. Materials and Methods
3.1. Dataset
3.2. The Proposed Model
3.2.1. Phase I: WBC Augmentation
- The encoder network: Using filter banks, the encoder network performed several convolutional operations to generate a new set of feature maps. The encoder network comprised three convolutional layers of 32, 64, and 128 filters using a 3 × 3 kernel and a LeakyReLU activation function. Following every convolutional layer was a maximum pooling layer of size 2 × 2 and a one-step stride. This method yielded a collection of pooled feature maps with the greatest weights. In this situation, the maximum pooling layer could be viewed as a feature selection strategy analogous to the feature selection algorithms used in conventional ML approaches.
- Latent vector space: This was expressed as 28 × 28 × 128, with 28 × 28 being the image size and 128 representing the number of compressed feature mappings. To retain the semantics across the encoder and decoder units, we built a latent vector space by using convolutional layers as opposed to dense layers [22]. The latent vector could be obtained by using the following equation:
- The decoder network: This consisted of three convolutional layers of 128, 64, and 32 filters using a 3 × 3 kernel and a LeakyReLU activation function. To reconstruct the compressed image into the original, each convolutional layer was up-sampled by using a subsampling layer. The reconstruction process of the encoded image shown in Equation (1) can be expresses as follows:
Algorithm 1 The GT-DCAE WBC augmentation algorithm. |
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3.2.2. Phase II: WBC Encoding and Feature Extraction
3.2.3. Phase III: The Two-Stage Atypical WBC Classification
Algorithm 2 The two-Stage DCAE-CNN atypical WBC classification algorithm. |
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3.2.4. Model Training
3.2.5. Phase III: Model Evaluation
4. Results
4.1. WBC Augmentation
4.2. Stage 1: Typical vs. Atypical Binary Classification
4.3. Stage II: The Atypical WBC Multiclassification Model
- CNN model employing GT-DCAE images without features extracted by the DCAE to evaluate the significance of the DCAE-extracted features, as shown in Table 3.
- DCAE-CNN on GT images, excluding synthetic images generated by the DCAE model, to examine the impact of synthetic images on improving the classification accuracy, as presented in Table 4.
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Precision | Sensitivity | Number of Images/Class | |
---|---|---|---|
Erythroblast | 1.00 | 0.94 | 78. |
Lymphocyte (atypical) | 0.50 | 1.00 | 11 |
Metamyelocyte | 0.33 | 0.50 | 15 |
Monoblast | 1.00 | 0.86 | 26 |
Myeloblast | 0.99 | 0.99 | 3268 |
Myelocyte | 0.88 | 0.78 | 42 |
Promyelocyte (bilobed) | 0.20 | 1.00 | 18 |
Promyelocyte | 0.67 | 0.53 | 70 |
WBCs | F-Score | AUC |
---|---|---|
Erythroblast | 0.9700 | 1.0000 |
Lymphocyte (atypical) | 0.6700 | 0.9020 |
Metamyelocyte | 0.4000 | 0.9970 |
Monoblast | 0.9200 | 1.0000 |
Myeloblast | 0.9900 | 0.9900 |
Myelocyte | 0.8200 | 0.9590 |
Promyelocyte (bilobed) | 0.3300 | 0.80500 |
Promyelocyte | 0.5900 | 0.9930 |
GT-DCAE | GT | |||
---|---|---|---|---|
Precision | Sensitivity | Precision | Sensitivity | |
Erythroblast | 1.00 | 0.94 | 1.00 | 0.20 |
Lymphocyte (atyp) | 5.00 | 1.00 | 0.00 | 0.00 |
Metamyelocyte | 0.33 | 0.50 | 0.00 | 0.00 |
Monoblast | 1.00 | 0.86 | 0.00 | 0.00 |
Myeloblast | 0.99 | 0.99 | 0.93 | 0.90 |
Myelocyte | 0.88 | .78 | 0.00 | 0.00 |
Promyelocyte (bilobed) | 0.20 | 1.00 | 0.00 | 0.00 |
Promyelocyte | 0.67 | 0.53 | 0.00 | 0.00 |
Average overall accuracy | 0.970 | 0.83 |
GT-DCAE | GT | |||
---|---|---|---|---|
Precision | Sensitivity | Precision | Sensitivity | |
Erythroblast | 1.00 | 0.94 | 1.00 | 0.79 |
Lymphocyte (atyp) | 5.00 | 1.00 | 0.50 | 1.00 |
Metamyelocyte | 0.50 | 1.00 | 0.50 | 1.00 |
Metamyelocyte | 0.33 | 0.50 | 0.33 | 0.33 |
Monoblast | 1.0 | 0.86 | 1.00 | 0.75 |
Myeloblast | 0.99 | 0.99 | 0.95 | 1.00 |
Myelocyte | 0.88 | 0.78 | 0.75 | 0.26 |
Promyelocyte (bilobed) | 0.20 | 1.00 | 0.80 | 0.20 |
Promyelocyte | 0.67 | 0.53 | 0.42 | 0.56 |
Promyelocyte | 0.67 | 0.53 | 0.42 | 0.56 |
Average overall accuracy | 0.97 | 0.93 |
Authors | Matek et al. (2019) [2] | Dasariraju et al. (2020) [19] | Dincic et al. (2021) [5] | Our Model 2022 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Prob. | Unadjusted | Unadjusted | Adjusted | Unadjusted | Unadjusted | Adjusted | ||||||
Metrics | Precision | Sensitivity | Precision | Sensitivity | Precision | Sensitivity | Precision | Sensitivity | Precision | Sensitivity | Precision | Sensitivity |
Erythroblast | 0.7500 | 0.8700 | 1.0000 | 0.9130 | 0.9123 | 0.8710 | 0.8600 | 1.0000 | 1.0000 | 0.9400 | 0.9679 | 0.9303 |
Lymphocyte (atyp) | 0.200 | 0.0700 | - | - | - | - | - | - | 0.5000 | 1.000 | 0.4839 | 0.9897 |
Metamyelocyte | 0.070 | 0.1300 | - | - | - | - | 0.5000 | 0.4300 | 0.3300 | 0.5000 | 0.3194 | 0.4948 |
Monoblast | 0.5200 | 0.5800 | 0.8750 | 1.0000 | 0.7982 | 0.9540 | 0.8800 | 0.9600 | 1.0000 | 0.8600 | 0.9679 | 0.8512 |
Myeloblast | 0.9400 | 0.9400 | 0.9675 | 0.9444 | 0.8826 | 0.9009 | 0.8000 | 0.9600 | 0.9900 | 0.9900 | 0.9582 | 0.9798 |
Myelocyte | 0.4600 | 0.4300 | - | - | - | - | 0.6500 | 0.5200 | 0.8800 | 0.7800 | 0.8517 | 0.7720 |
Promyelocyte (bilobed) | 0.4500 | 0.4100 | - | - | - | - | - | - | 0.2000 | 1.0000 | 0.1935 | 0.9897 |
Promyelocyte | 0.6300 | 0.5400 | 0.6250 | 0.8330 | 0.5701 | 0.5439 | 0.8900 | 0.7100 | 0.6700 | 0.5300 | 0.6484 | 0.5245 |
Overall Accuracy | - | 0.9340 | 0.8676 | 0.8100 | 0.9700 | 0.9312 | ||||||
AUC | 0.9860 | Not Cal | Not cal | Not cal | 0.997 | 0.9897 |
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Elhassan, T.A.; Mohd Rahim, M.S.; Siti Zaiton, M.H.; Swee, T.T.; Alhaj, T.A.; Ali, A.; Aljurf, M. Classification of Atypical White Blood Cells in Acute Myeloid Leukemia Using a Two-Stage Hybrid Model Based on Deep Convolutional Autoencoder and Deep Convolutional Neural Network. Diagnostics 2023, 13, 196. https://doi.org/10.3390/diagnostics13020196
Elhassan TA, Mohd Rahim MS, Siti Zaiton MH, Swee TT, Alhaj TA, Ali A, Aljurf M. Classification of Atypical White Blood Cells in Acute Myeloid Leukemia Using a Two-Stage Hybrid Model Based on Deep Convolutional Autoencoder and Deep Convolutional Neural Network. Diagnostics. 2023; 13(2):196. https://doi.org/10.3390/diagnostics13020196
Chicago/Turabian StyleElhassan, Tusneem A., Mohd Shafry Mohd Rahim, Mohd Hashim Siti Zaiton, Tan Tian Swee, Taqwa Ahmed Alhaj, Abdulalem Ali, and Mahmoud Aljurf. 2023. "Classification of Atypical White Blood Cells in Acute Myeloid Leukemia Using a Two-Stage Hybrid Model Based on Deep Convolutional Autoencoder and Deep Convolutional Neural Network" Diagnostics 13, no. 2: 196. https://doi.org/10.3390/diagnostics13020196
APA StyleElhassan, T. A., Mohd Rahim, M. S., Siti Zaiton, M. H., Swee, T. T., Alhaj, T. A., Ali, A., & Aljurf, M. (2023). Classification of Atypical White Blood Cells in Acute Myeloid Leukemia Using a Two-Stage Hybrid Model Based on Deep Convolutional Autoencoder and Deep Convolutional Neural Network. Diagnostics, 13(2), 196. https://doi.org/10.3390/diagnostics13020196