Comparative Analysis of Mitogenomes of Chironomus (Diptera: Chironomidae)
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Taxon Sampling and Sequencing
2.2. Genome Assembly and Annotation
2.3. Sequence Analyses
2.4. Phylogenetic Analyses
3. Results and Discussion
3.1. Basic Structure of Chironomus Mitogenomes
3.2. Phylogenetic Analysis
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Sample ID | Life Stage | Sampling Metadata | GenBank Accession | Reference |
---|---|---|---|---|---|
Microchironomus tabarui | XL3993 | Adult male | Hengshui, Hebei, China, 37.651626°N, 115.650831°E, 1 September 2020, leg. X.-Y. Liu | MZ261913 | [23] |
Microchironomus tener | XL1462 | Adult male | Changjiang, Hainan, China, 19.11463°N, 109.08419°E, 13 March 2016, leg. B.-J. Sun | ON975027 | this study |
Chironomus tepperi | JN861749 | NA | NA | JN861749 | [19] |
Chironomus flaviplumus | CNUISI-020005203 | Larva | Yeondeung stream, Yeosu, South Korea 34°45′26.0″ N, 127°42′51.2″ E, May 2020 | MW770891 | [20] |
Chironomus kiiensis | BSZ21 | Larva | Lishui, Zhejiang, China, 28°39′30′′ N, 120°5′29′′ E, August 2019, leg. X. Qi | MZ150770 | [21] |
Chironomus transvaalensis | NAM96 | Larva | Goreangab Dam, Khomas, Windhoek, Namibia, 22.5267°S, 17.0153°E, 3 December 2018, leg. X.-L. Lin | ON975023 | this study |
Chironomus circumdatus | NEC119 | Larva | Kouembélia, Tontouta, New Caledonia, 22.0083056°S, 166.2062775°E, 11 May 2020, leg. N. Mary | ON975024 | this study |
Chironomus javanus | NLCH300 | Adult male | Yizhang, Chenzhou, Hunan, China, 24.9854183°N, 112.914357°E, 30 August 2020, leg. X.-L. Lin | ON975025 | this study |
Chironomus anthracinus | XL575 | Adult male | Lian lake, Trondheim, Norway, 63.39989°N, 10.31761°E, 17 June 2016, leg. X.-L. Lin | ON975026 | this study |
Chironomus nipponensis | X2896 | Larva | Laotuding, Huanren, Benxi, Liaoning, China, 41.2894°N, 124.8980°E, 3 September 2014, leg. C. Song | ON975028 | this study |
Chironomus claggi | XL2930 | Larva | Maoyangzhen, Wuzhishan Hainan, China, 18.93696°N, 109.50804°E, 6 December 2010, leg. F.-Q. Kong | ON975029 | this study |
Chironomus plumosus | XL3435 | Larva | Yuqiao Reservoir, Jizhou, Tianjin, China, 40.01974°N, 117.6389°E, 21 November 2019, leg. H.-J. Yu | ON975030 | this study |
Chironomus tentans | XL3813 | Larva | Naqu, Xizang, China, 31.621813°N, 91.739874°E, 3 September 2020, leg. Y. Peng | ON975031 | this study |
Chironomus novosibiricus | XL3834 | Larva | Zegucuo, Shannan, Xizang, China, 28.754153°N, 91.676359°E, 30 August 2020, leg. Y. Peng | ON975032 | this study |
Chironomus annularius | XL3838 | Larva | Zegucuo, Shannan, Xizang, China, 28.754153°N, 91.676359°E, 30 August 2020, leg. Y. Peng | ON975033 | this study |
Chironomus agilis | XL4188 | Adult male | Chun′an, Hangzhou, Zhejiang, China, 29.567168°N, 118.86825°E, 8 May 2021, leg. Y.-Y. Han | ON975034 | this study |
Chironomus nippodorsalis | XL4371 | Adult female | Hefeng, Hubei, China, 29.89269645°N, 110.0287267°E, 12-July-15, leg. Q. Wang | ON975035 | this study |
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Li, S.-Y.; Zhao, Y.-M.; Guo, B.-X.; Li, C.-H.; Sun, B.-J.; Lin, X.-L. Comparative Analysis of Mitogenomes of Chironomus (Diptera: Chironomidae). Insects 2022, 13, 1164. https://doi.org/10.3390/insects13121164
Li S-Y, Zhao Y-M, Guo B-X, Li C-H, Sun B-J, Lin X-L. Comparative Analysis of Mitogenomes of Chironomus (Diptera: Chironomidae). Insects. 2022; 13(12):1164. https://doi.org/10.3390/insects13121164
Chicago/Turabian StyleLi, Shu-Yi, Yan-Min Zhao, Bing-Xin Guo, Chen-Hong Li, Bing-Jiao Sun, and Xiao-Long Lin. 2022. "Comparative Analysis of Mitogenomes of Chironomus (Diptera: Chironomidae)" Insects 13, no. 12: 1164. https://doi.org/10.3390/insects13121164
APA StyleLi, S. -Y., Zhao, Y. -M., Guo, B. -X., Li, C. -H., Sun, B. -J., & Lin, X. -L. (2022). Comparative Analysis of Mitogenomes of Chironomus (Diptera: Chironomidae). Insects, 13(12), 1164. https://doi.org/10.3390/insects13121164