Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria
Abstract
:1. Introduction
2. Secondary Metabolite Production by Cyanobacteria
2.1. Prediction of Biosynthetic Gene Clusters (BGCs) in Cyanobacterial Genomes
2.2. Terpenes
2.3. Alkaloids
2.4. Polyketides/Non-Ribosomal Peptide/Lipopeptides/Siderophores
2.5. Ribosomally Synthesized and Post-Translationally Modified Peptides
2.6. Lipids/Saccharides/Nucleosides/Others
3. Engineering Cyanobacteria for Industrial Production of Secondary Metabolites
3.1. Heterologous Expression for Cyanobacterial Secondary Metabolite Production
3.2. Heterologous Expression for Biofuel Production
3.3. Improvement of Photosynthetic Efficiency
3.4. Current Limitations in Engineering Cyanobacteria
4. Advanced Engineering Approaches through Synthetic and Systems Biology
4.1. Synthetic Biology
4.2. Next-Generation Sequencing/Omics/Genome-Scale Model
5. Conclusions and Future Perspectives
Author Contributions
Funding
Conflicts of Interest
References
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Class | Metabolite | Bioactivity | Producing Species | Ref. |
---|---|---|---|---|
Terpene | Phycocyanin | Antioxidant, anti-inflammatory, neuroprotective, hepatoprotective | All cyanobacteria | [12,13,14,15,16] |
Terpene | Carotenoids | Antioxidant, sunscreen | All cyanobacteria | [17,18] |
Terpene | Squalene | Antioxidant | Phormidium | [19] |
Alkaloid | Saxitoxin | Neurotoxin | Anabaena, Aphanizomenon, Cylindrospermopsis, Lyngbya, Planktothrix, | [20,21,22] |
Indole | Nostodione | Antifungal | Nostoc | [23] |
Indole alkaloid | Scytonemin | Anti-inflammatory, sunscreen | Scytonema, Nostoc | [24,25,26,27] |
Indole alkaloid | Hapalindole | Antibacterial, anti-tuberculosis, anticancer | Hapalosiphon | [28,29] |
Alkaloid/Polyketide synthase (PKS) | Anatoxin-a | Neurotoxin, anti-inflammatory | Anabaena, Aphanizomenon, Cylindrospermum, Oscillatoria, Planktothrix | [30,31] |
Alkaloid/PKS | Aplysiatoxin | Cytotoxin, antiviral | Moorea | [32,33] |
Alkaloid/Non-ribosomal peptide synthetase (NRPS) | Lyngbyatoxin | Cytotoxin, dermatotoxin | Moorea | [34] |
Alkaloid/PKS-NRPS | Cylindrospermopsin | Cytotoxin | Aphanizomenon, Cylindrospermopsis, Oscillatoria, Raphidiopsis | [35,36,37] |
PKS | Fischerellin | Antifungal, antialgal, anti-cyanobacterial | Fischerella | [38] |
NRPS | β-N-methylamino-l-alanine | Neurotoxin | Anabaena, Nostoc | [39] |
NRPS | Cyanopeptolin | Protease inhibitor | Planktothrix, Microcystis | [40,41] |
PKS-NRPS | Microcystin | Hepatotoxin | Microcystis, Nostoc, Planktothrix, Anabaena | [40,42,43,44,45] |
PKS-NRPS | Nodularin | Hepatotoxin | Nodularia | [46] |
PKS-NRPS | Apratoxin | Anticancer | Lyngbya | [47] |
PKS-NRPS | Aeruginoside | Protease inhibitor | Planktothrix | [48] |
PKS-NRPS | Aeruginosin | Protease inhibitor | Microcystis, Planktothrix | [40,49] |
PKS-NRPS | Cryptophycins | Cytotoxin | Nostoc | [50] |
PKS-NRPS | Nostophycins | Cytotoxin | Nostoc | [51] |
PKS-NRPS | Curacins | Cytotoxin | Moorea | [52] |
PKS-NRPS | Hectochlorin | Cytotoxin | Moorea | [53] |
PKS-NRPS | Jamaicamides | Neurotoxin | Moorea | [54] |
PKS-NRPS | Dolastatin | Cytotoxin, anticancer, antiprotozoal | Moorea, Lyngbya, Symploca | [55,56] |
Lipopeptide | Antillatoxin | Neurotoxin | Moorea | [57] |
Lipopeptide | Carmabin | Antimalarial, anticancer, antiproliferative | Moorea | [58,59] |
Lipopeptide | Lyngbyabellin | Cytotoxin, antifungal | Moorea, Lyngbya | [60,61] |
Lipopeptide | Kalkitoxin | Neurotoxin | Moorea | [57] |
Ribosomally synthesized and post-translationally modified peptide (RiPP) | Patellamide | Moderate cytotoxicity | Prochloron | [62] |
RiPP | Microviridin | Protease inhibitor | Microcystis, Planktothrix | [63,64] |
RiPP | Shinorin | Sunscreen | Anabaena, Nostoc | [65] |
Fatty acid amide | Besarhanamide A | Moderate toxicity to brine shrimp | Moorea | [66] |
Fatty acid amide | Semiplenamide | Toxicity to brine shrimp | Lyngbya | [67] |
Lipopolysaccharide | Lipopolysaccharides | Endotoxin | All cyanobacteria | [68] |
Polysaccharide | Polysaccharide | Antitumor, antiviral, antibacterial, anti-inflammatory, immunostimulant | All cyanobacteria | [69,70,71] |
Nucleoside | Toyocamycin | Antifungal | Tolypothrix | [72] |
Nucleoside | Tubercidin | Antifungal | Tolypothrix | [73] |
Strategy 1 | Strain | Target 2 | Gene | Ref. |
---|---|---|---|---|
HR | S. elongatus PCC 7942 | Isoprene | ispGS, idi, dxr | [6] |
HR | S. elongatus PCC 7942 | Succinate * | ppc, gltA, kgd, gabD | [108] |
HR | S. elongatus PCC 7942 | Amorpha-4,11-diene, Squalene * | dxs, idi, ispA, dxr | [103] |
HR | S. elongatus UTEX 2973 | Sucrose * | cscB | [109] |
HR | Synechocystis sp. PCC 6803 | Isoprene | ispS | [110] |
HR | S. elongatus PCC 7942 | Isopropanol * | sadh, thl, atoAD’, adc | [111] |
HR | Synechocystis sp. PCC 6803 | Geranyllinalool | NaGLS | [112] |
HR | S. elongatus PCC 7942 | Squalene * | dxs, idi, ispA, SQS | [104] |
HR | S. elongatus PCC 7942 | Butyrate | phaBJ, Ptb, buk, pte2, tesB, yciA | [113] |
HR | Anabaena sp. PCC 7120 | Ethanol | pdc, adhA, sigE, ald, invAB | [114] |
HR | S. elongatus PCC 7942 | Sucrose * | cscB, sps, glgC | [115] |
HR | S. elongatus PCC 7942 | 3-Hydroxybutyrate | phaAB, tesB, nphT7, pptesB, yciA, pte1 | [116] |
HR | S. elongatus PCC 7942 | Heparosan | galU, PmHS2 | [117] |
HR | Synechocystis sp. PCC 6803 | 1-Butanol | phaAB, nphT7, fadB, phaJ, ccr, ter, pduP, mhpF, yqhD, yjgB, pk, pta, adh, sigE | [97] |
HR | Synechocystis sp. PCC 6803 | Sorbitol | s6pdh, fbp, pnt, had1, had2 | [118] |
HR | Synechocystis sp. PCC 6803 | β-Phellandrene * | GPPS, PHLS | [119] |
HR | S. elongatus PCC 7942 | Acetone | pdc, ald6, acs, pps, ppc, mmc | [120] |
HR | S. elongatus PCC 7942 | Xylitol | xylEFGH, XDH, DI, XR | [121] |
HR | S. elongatus PCC 7942 | Trehalose * | tpsp, Tret1, mts, glgCX, cscB, mth | [122] |
HR | S. elongatus PCC 7942 | 2,3-Butanediol | alsD, alsS, adh, galP, zwf, edd, pgi, gnd, pfk, eda, cp12, rbcLXS, prk | [5] |
HR | S. elongatus PCC 7942 | α-Farnesene | AFS | [123] |
HR | Synechocystis sp. PCC 6803 | Ethanol | eno, pgk, pyk, prk | [124] |
HR | S. elongatus PCC 7942 | Limonene * | ls, GPPS, dxs | [125] |
HR | Synechococcus sp. PCC 7002 | d-Lactate | acsA | [126] |
epi | Synechocystis sp. PCC 6803 | Isoprene | ispS | [127] |
epi | Synechocystis sp. PCC 6803 | p-Hydroxyphenylacetaldoxime, dhurrin | CYP71E1, CYP79A1, UGT85B1 | [128] |
epi | Anabaena sp. PCC 7120 | Lyngbyatoxin A * | ltxA-C, ltxA-D | [129] |
epi | Synechocystis sp. PCC 6803 | Ethanol | pdc, adh, rbcSC, 70glpX, tktA, fbaA | [98] |
epi | Synechocystis sp. PCC 6803 | Shinorine * | FsABCD, APPT | [130] |
epi | S. elongatus UTEX 2973 | Hapalindole * | famH1, famH2, famH3, aph3, famE2, famD2, famC1, famC2, famC3 | [131] |
HR + epi | Synechocystis sp. PCC 6803 | Astaxanthin* | crtWZ, dxs, idi, ispA, F/SBPase, RuBisCO, rpe, tktA, psy | [107] |
HR + epi | S. elongatus PCC 7002 | 2,3-Butanediol | alsDS, adh | [132] |
HR + epi | Synechocystis sp. PCC 6803 | Isobutanol | kivd, adh | [133] |
HR + epi | Synechocystis sp. PCC 6803 | Limonene * | lims, rpi, rpe, GPPS | [134] |
CRISPR | S. elongatus PCC 7942 | Succinate * | glgC, gltA, ppc | [135] |
CRISPR + epi | Synechocystis sp. PCC 6803 | Fatty alcohol * | Maqu2220, DPW, plsX, aar, ado, sll1848, sll1752, slr2060 | [136] |
CRISPR | Synechocystis sp. PCC 6803 | N-Butanol, ethanol | adhA, pdc, pduP, phaJ, ter, phaBCE, nphT7, sth, yqhD, xfpk, PL22, SAS2203, gltA, odhB, ackA, pyrF, nrtA, ndhD | [99] |
CRISPR | S. elongatus PCC 7942 | Squalene * | acnB, cpcB2 | [105] |
Year | Omics Study | Strain | Ref. |
---|---|---|---|
2016 | Genome-scale model (GEM) + Metabolome | Synechococcus sp. PCC 7002 | [161] |
2016 | Metabolome | S. elongatus PCC 7942 | [6] |
2016 | Metabolome + Transcriptome | Synechocystis sp. PCC 6803 | [127] |
2016 | Proteome | S. elongatus PCC 7942 | [162] |
2016 | Proteome | Synechocystis sp. PCC 6803 | [163] |
2016 | Transcriptome | S. elongatus PCC 7942 | [164] |
2016 | Transcriptome | Synechocystis sp. PCC 6803 | [165] |
2016 | Transcriptome | Prochlorococcus NATL2A | [166] |
2016 | Transcriptome | Nostoc sp. PCC 7120 | [167] |
2016 | Transcriptome | S. elongatus PCC 7942 | [168] |
2016 | GEM | S. elongatus PCC 7942 | [10] |
2016 | Transcriptome | M. aeruginosa | [169] |
2017 | Metabolome | Synechococcus sp. PCC 7002 | [170] |
2017 | Metabolome | S. elongatus PCC 7942 | [171] |
2017 | Metabolome | S. elongatus PCC 7942 | [172] |
2017 | Metabolome | S. elongatus PCC 7942 | [5] |
2017 | Metabolome | Synechocystis sp. PCC 6803 | [173] |
2017 | Proteome | Synechocystis sp. PCC 6803 | [174] |
2017 | Proteome | Synechocystis sp. PCC 6803 | [175] |
2017 | Proteome | Synechocystis sp. PCC 6803 | [176] |
2017 | Proteome | Synechococcus strains | [177] |
2017 | Proteome | Prochlorococcus strains | [178] |
2017 | Proteome | P. marinus SS 120 | [179] |
2017 | Proteome | Synechocystis sp. PCC 6803 | [180] |
2017 | Transcriptome | Synechocystis sp. PCC 6803 | [181] |
2017 | Transcriptome + Interactome | Synechocystis sp. PCC 6803 | [182] |
2017 | Transcriptome + Metabolome | Synechococcus sp. IU 625 | [183] |
2017 | Transcription start site (TSS) | F. muscicola PCC 7414 and F. thermalis PCC 7521 | [154] |
2017 | GEM | Synechocystis sp. PCC 6803 | [184] |
2017 | GEM | Nostoc sp. PCC 7120 | [185] |
2017 | GEM | S. elongatus UTEX 2973 | [186] |
2017 | GEM | Synechococcus sp. PCC 7002 | [161] |
2018 | Transcriptome | M. aeruginosa | [187] |
2018 | Transcriptome + Translatome | Synechocystis sp. PCC 6803 | [155] |
2018 | TSS | S. elongatus UTEX 2973 | [153] |
2018 | GEM | Synechocystis sp. PCC 6803 | [161] |
2019 | Metabolome | Synechococcus sp. PCC 7002 | [188] |
2019 | Proteome | Synechocystis sp. PCC 6803 | [189] |
2019 | Transcriptome | Prochlorococcus MIT9313 | [190] |
2019 | Transcriptome | N. punctiforme PCC 73102 | [191] |
2019 | Transcriptome | Leptolyngbya sp. PCC 6406 | [192] |
2020 | GEM | Synechocystis sp. PCC 6803 | [160] |
2020 | Metabolome | S. elongatus PCC 11802 and PCC 11801 | [193] |
2020 | Metabolome | Nostoc sp. UIC 10630 | [194] |
2020 | Metabolome | Leibleinia gracilis | [195] |
2020 | Metabolome | Synechocystis sp. PCC 6803 | [196] |
2020 | Metabolome | S. elongatus UTEX 2973 | [197] |
2020 | Metabolome | S. elongatus PCC 11801 | [198] |
2020 | Metabolome | M. aeruginosa PCC 7820 and PCC 7806 | [199] |
2020 | Metabolome | Synechocystis sp. PCC 6803 | [200] |
2020 | Metabolome | Nodularia spumigena | [201] |
2020 | Proteome | Nostoc sp. PCC 7120 | [202] |
2020 | Proteome | Synechococcus strains | [203] |
2020 | Proteome | Nodosilinea strains | [204] |
2020 | Transcriptome | Nostoc sp. PCC 7120 | [205] |
2020 | Transcriptome | Euhalothece sp. Z-M001 | [152] |
2020 | Transcriptome | Synechocystis sp. PCC 6803 | [206] |
2020 | Transcriptome | N. punctiforme PCC 73102 | [207] |
2020 | Transcriptome | Synechococcus sp. PCC 7002 | [208] |
2020 | Transcriptome + Metabolome | Synechocystis sp. PCC 6803 | [107] |
2020 | GEM | Synechococcus sp. BDU 130192 | [209] |
2020 | GEM | A. variabilis ATCC 29413 | [210] |
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Jeong, Y.; Cho, S.-H.; Lee, H.; Choi, H.-K.; Kim, D.-M.; Lee, C.-G.; Cho, S.; Cho, B.-K. Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria. Microorganisms 2020, 8, 1849. https://doi.org/10.3390/microorganisms8121849
Jeong Y, Cho S-H, Lee H, Choi H-K, Kim D-M, Lee C-G, Cho S, Cho B-K. Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria. Microorganisms. 2020; 8(12):1849. https://doi.org/10.3390/microorganisms8121849
Chicago/Turabian StyleJeong, Yujin, Sang-Hyeok Cho, Hookeun Lee, Hyung-Kyoon Choi, Dong-Myung Kim, Choul-Gyun Lee, Suhyung Cho, and Byung-Kwan Cho. 2020. "Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria" Microorganisms 8, no. 12: 1849. https://doi.org/10.3390/microorganisms8121849
APA StyleJeong, Y., Cho, S. -H., Lee, H., Choi, H. -K., Kim, D. -M., Lee, C. -G., Cho, S., & Cho, B. -K. (2020). Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria. Microorganisms, 8(12), 1849. https://doi.org/10.3390/microorganisms8121849