Prevalence, Antimicrobial Resistance, Virulence Genes and Genetic Diversity of Salmonella Isolated from Retail Duck Meat in Southern China
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection
2.2. Salmonella Isolation and Identification
2.3. Antibiotic Susceptibility Testing
2.4. Detection of Resistance Genes and Virulence-Associated Genes
2.5. Pulse-Field Gel Electrophoresis (PFGE)
3. Results
3.1. Salmonella Prevalence and Serotypes
3.2. Antibiotic Susceptibility Testing
3.3. Detection of Antimicrobial Resistance Genes
3.4. Detection of Virulence-Associated Genes
3.5. PFGE Analysis
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Conflicts of Interest
References
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Season of Isolation | Samples (n) | Number Positive | Ratio (%) |
---|---|---|---|
Spring | 140 | 46 | 32.9 |
Summer | 85 | 53 | 62.4 |
Autumn | 80 | 37 | 46.3 |
Winter | 60 | 15 | 25.0 |
Total | 365 | 151 | 41.4 |
Antibiotics 1 | Minimum Inhibitory Concentration (μg/mL) Distribution of 151 Salmonella isolates | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
≤0.125 | 0.25 | 0.5 | 1 | 2 | 4 | 8 | 16 | 32 | 64 | 128 | 256 | ≥512 | Resistant Breakpoint | Resistance % (n = 151) | |
AMP | 91 | 9 | 14 | 23 | 12 | 1 | 1 | ≥32 | 9.3(n = 14) | ||||||
FEP | 64 | 50 | 2 | 1 | 19 | 2 | 8 | 5 | ≥32 | 0 | |||||
CTX | 119 | 1 | 3 | 3 | 2 | 6 | 8 | 9 | ≥4 | 16.6(n = 25) | |||||
IPM | 31 | 32 | 79 | 9 | ≥4 | 0 | |||||||||
NAL | 10 | 27 | 32 | 33 | 8 | 16 | 23 | 2 | ≥32 | 53.6(n = 81) | |||||
CIP | 21 | 3 | 23 | 34 | 41 | 5 | 9 | 3 | 9 | 3 | ≥4 | 19.2(n = 29) | |||
OFX | 16 | 3 | 32 | 14 | 29 | 25 | 11 | 8 | 3 | 7 | 3 | ≥2 | 56.9(n = 86) | ||
STR | 9 | 33 | 35 | 6 | 10 | 35 | 4 | 19 | ≥64 | 45.0(n = 68) | |||||
GEN | 11 | 40 | 9 | 44 | 18 | 1 | 28 | ≥16 | 31.1(n = 47) | ||||||
AMK | 12 | 120 | 8 | 6 | 1 | 2 | 2 | ≥64 | 1.3(n = 2) | ||||||
CHL | 1 | 53 | 2 | 1 | 3 | 69 | 19 | 3 | ≥32 | 62.3(n = 94) | |||||
FFC | 6 | 44 | 10 | 1 | 1 | 1 | 61 | 24 | 3 | ≥16 | 60.3(n = 91) | ||||
TET | 22 | 4 | 58 | 67 | ≥16 | 85.4(n = 129) | |||||||||
SUL | 2 | 6 | 16 | 127 | ≥512 | 84.1(n = 127) | |||||||||
PB | 10 | 24 | 105 | 10 | 2 | ≥ 8 | 0 |
Serotype (No. Tested) | Number of Resistant Isolates to Indicated Number of Antimicrobials (%) | ||||
---|---|---|---|---|---|
0–2 | 3–5 | 6–8 | 9–11 | Total (Resistance ≥ 3) | |
S. Corvallis (25) | 1(4.0) | 15(60.0) | 9(36.0) | 24(96.0) | |
S. Kentucky (22) | 2(9.1) | 4(18.2) | 10(45.5) | 6(27.3) | 20(90.9) |
S. Agona (20) | 3(15.0) | 8(40.0) | 8(40.0) | 1(5.0) | 17(85.0) |
S. Indiana (14) | 1(7.1) | 5(35.7) | 4(28.6) | 4(28.6) | 13(92.9) |
S. Thompson (8) | 8(100) | ||||
S. Saint Paul (8) | 3(37.5) | 5(62.5) | 8(100) | ||
S. Typhimurium (6) | 2(33.3) | 2(33.3) | 2(33.3) | 4(66.7) | |
S. Mbandaka (6) | 1(16.7) | 4(66.7) | 1(16.7) | 5(83.3) | |
S. Braenderup (6) | 1(16.7) | 3(50.0) | 2(33.3) | 6(100) | |
S. Derby (5) | 1(20.0) | 3(60.0) | 1(20.0) | 4(80.0) | |
S. Cerro (4) | 1(25.0) | 3(75.0) | 4(100) | ||
S. Rissen (4) | 2(50.0) | 2(50.0) | 2(50.0) | ||
S. Enteritidis (4) | 4(100) | 4(100) | |||
Others 2 (19) | 5(26.3) | 12(63.2) | 2(10.5) | 14(73.7) | |
Total (151) | 18(11.9) | 61(40.1) | 54(35.8) | 18(11.9) | 133(88.1) |
Antimicrobial Classes | No. of Resistant Isolates | Genes Detected | No. of Isolates (%) |
---|---|---|---|
Sulfonamides | 127 | Sul I | 80 (63.0) |
Sul II | 41 (32.3) | ||
Tetracyclines | 129 | tet A | 62 (48.1) |
tet B | |||
Chloramphenicols | 94 | cat1 | 1 (1.1) |
floR | 53 (56.4) | ||
Aminoglycosides | 68 | aadA1 | 57 (83.8) |
Aaca(3)-Ia | |||
strA | 64 (94.1) | ||
Fluoroquinolones | 81 | qnrA | |
qnrB | 18 (22.2) | ||
qnrS | 64 (79.0) | ||
aac (6′)-Ib | 21 (25.9) | ||
β-lactamase | 34 3 | bla TEM | 34 (100) |
bla PSE | |||
bla SHV | |||
bla CTX-M | 3 (8.8) |
Serotype (No. Tested) | Number of Virulence Genes Positive Isolates (%) | ||||||||
---|---|---|---|---|---|---|---|---|---|
avrA | ssaQ | mgtC | siiD | sopB | spvC | spvR | stn | fimA | |
S. Corvallis (25) | 25(100) | 25(100) | 25(100) | 25(100) | 25(100) | 25(100) | 25(100) | ||
S. Kentucky (22) | 22(100) | 22(100) | 22(100) | 22(100) | 22(100) | 22(100) | 22(100) | ||
S. Agona (20) | 20(100) | 20(100) | 20(100) | 20(100) | 20(100) | 20(100) | 20(100) | ||
S. Indiana (14) | 14(100) | 14(100) | 14(100) | 14(100) | 14(100) | 14(100) | 14(100) | ||
S. Thompson (8) | 8(100) | 8(100) | 8(100) | 8(100) | 8(100) | ||||
S. Saint Paul (8) | 8(100) | 8(100) | 8(100) | 8(100) | 8(100) | 8(100) | 8(100) | ||
S. Typhimurium (6) | 6(100) | 6(100) | 6(100) | 6(100) | 6(100) | 4(66.7) | 4(66.7) | 6(100) | 6(100) |
S. Mbandaka (6) | 6(100) | 6(100) | 6(100) | 6(100) | 6(100) | 6(100) | 6(100) | ||
S. Braenderup (6) | 3(50.0) | 6(100) | 6(100) | 6(100) | 6(100) | 6(100) | 6(100) | ||
S. Derby (5) | 4(80.0) | 4(80.0) | 5(100) | 5(100) | 5(100) | 1(20.0) | 1(20.0) | 5(100) | 5(100) |
S. Cerro (4) | 4(100) | 4(100) | 4(100) | 4(100) | 4(100) | 4(100) | |||
S. Rissen (4) | 4(100) | 4(100) | 4(100) | 4(100) | 4(100) | 4(100) | 4(100) | ||
S. Enteritidis (4) | 3(75.0) | 4(100) | 4(100) | 4(100) | 4(100) | 3(75.0) | 4(100) | 4(100) | |
Others 4 (19) | 16(84.2) | 16(84.2) | 19(100) | 19(100) | 19(100) | 1(5.3) | 19(100) | 19(100) | |
Total (151) | 131(86.8) | 135(89.4) | 151(100) | 151(100) | 151(100) | 10(6.7) | 8(5.3) | 151(100) | 151(100) |
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Chen, Z.; Bai, J.; Wang, S.; Zhang, X.; Zhan, Z.; Shen, H.; Zhang, H.; Wen, J.; Gao, Y.; Liao, M.; et al. Prevalence, Antimicrobial Resistance, Virulence Genes and Genetic Diversity of Salmonella Isolated from Retail Duck Meat in Southern China. Microorganisms 2020, 8, 444. https://doi.org/10.3390/microorganisms8030444
Chen Z, Bai J, Wang S, Zhang X, Zhan Z, Shen H, Zhang H, Wen J, Gao Y, Liao M, et al. Prevalence, Antimicrobial Resistance, Virulence Genes and Genetic Diversity of Salmonella Isolated from Retail Duck Meat in Southern China. Microorganisms. 2020; 8(3):444. https://doi.org/10.3390/microorganisms8030444
Chicago/Turabian StyleChen, Zhengquan, Jie Bai, Shaojun Wang, Xibin Zhang, Zeqiang Zhan, Haiyan Shen, Hongxia Zhang, Junping Wen, Yuan Gao, Ming Liao, and et al. 2020. "Prevalence, Antimicrobial Resistance, Virulence Genes and Genetic Diversity of Salmonella Isolated from Retail Duck Meat in Southern China" Microorganisms 8, no. 3: 444. https://doi.org/10.3390/microorganisms8030444
APA StyleChen, Z., Bai, J., Wang, S., Zhang, X., Zhan, Z., Shen, H., Zhang, H., Wen, J., Gao, Y., Liao, M., & Zhang, J. (2020). Prevalence, Antimicrobial Resistance, Virulence Genes and Genetic Diversity of Salmonella Isolated from Retail Duck Meat in Southern China. Microorganisms, 8(3), 444. https://doi.org/10.3390/microorganisms8030444