Identification of Breast Malignancy by Marker-Controlled Watershed Transformation and Hybrid Feature Set for Healthcare
Abstract
:1. Introduction
- To develop an automated CADx system to detect breast cancer accurately.
- To introduce the marker-controlled watershed transformation for efficient segmentation.
- To extract hybrid feature set incorporating both shape-based and texture features to describe lesions in detail and to overcome the limitations of texture-based methods for BUS images.
2. Proposed Methods
2.1. Image Database
2.2. Preprocessing
2.3. Segmentation
2.4. Feature Extraction
2.5. Classification
3. Results
4. Discussion
5. Conclusions and Future Directions
Author Contributions
Funding
Conflicts of Interest
Data Sharing and Availability
References
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Field | Description | Field | Description |
---|---|---|---|
Id | Patient ID | Rf1 | First scan |
Rf2 | Second scan | Rf2 | Second scan |
Roi1 | ROI for the first scan | Roi2 | ROI for the second scan |
birads | Category of BI-RADS | Class | Malignant (1), Benign (0) |
Features | Formula | Features | Formula |
---|---|---|---|
Where represents number of different intensity levels. | Where | ||
Where and are the means and standard deviations of and | |||
Where , , , | |||
Feature | Formula | Description |
---|---|---|
Elongation | Used to measure the object length. | |
Roundness | Method to show the level of determination lesion. | |
Solidity | Used to measure the density of the lesion. | |
Rectangularity | Method to explain resemblance of lesion shape with rectangular shape. | |
Compactness | The ratio between the lesion area with circle area. | |
Convexity | This technique is the perimeter ratio between convex full of lesion and the lesion itself. | |
Eccentricity | The proportion of distance between the ellipse focal and major axis. |
Feature set | Size | Description |
---|---|---|
GLCM | 1 × 20 | Produce texture features based on second order statistical method by co-occurrence matrix |
Shape-based | 1× 7 | Compute elongation, compactness, rectangularity, solidity, roundness, eccentricity, and convexity |
Ensemble (Preset: RUSBoosted trees, ensemble method: RUSBoost, learner type: Decision tree, maximum number of splits: 20, number of learners: 30, learning rate: 0.1) | |||
Scan | Statistic | Value | 95% of Confidence Interval |
Longitudinal | Accuracy | 97.00% | 91.48% to 99.38% |
Sensitivity | 96.23% | 87.02% to 99.54% | |
Specificity | 97.87% | 88.71% to 99.95% | |
PPV | 98.08% | 88.00% to 99.72% | |
NPV | 95.83% | 85.51% to 98.90% | |
KNN (Preset: Weighted KNN, number of neighbors: 10, distance metric: Euclidean distance weight: Squared inverse) | |||
Longitudinal | Accuracy | 94.00% | 87.40% to 97.77% |
Sensitivity | 92.59% | 82.11% to 97.94% | |
Specificity | 95.65% | 85.16% to 99.47% | |
PPV | 96.15% | 86.54% to 98.98% | |
NPV | 91.67% | 81.04% to 96.59% | |
Decision tree (Preset: Complex tree, maximum number of splits: 100, split criterion: Gini’s diversity index) | |||
Longitudinal | Accuracy | 88.00% | 79.98% to 93.64% |
Sensitivity | 90.00% | 78.19% to 96.67% | |
Specificity | 86.00% | 73.26% to 94.18% | |
PPV | 86.54% | 76.27% to 92.78% | |
NPV | 89.58% | 78.80% to 95.22% |
Ensemble (Preset: Ensemble method: RUSBoost, RUSBoosted trees, learner type: Decision tree, number of learners: 30, maximum number of splits: 20, learning rate: 0.1) | |||
Scan | Statistic | Value | 95% of Confidence Interval |
Transverse | Accuracy | 95.00% | 88.72% to 98.36% |
Sensitivity | 92.73% | 82.41% to 97.98% | |
Specificity | 97.78% | 88.23% to 99.94% | |
PPV | 98.08% | 88.00% to 99.72% | |
NPV | 91.67% | 81.05% to 96.59% | |
KNN (Preset: Weighted KNN, distance metric: Euclidean, number of neighbors: 10, distance weight: Squared inverse) | |||
Transverse | Accuracy | 93.00% | 86.11% to 97.14% |
Sensitivity | 90.91% | 80.05% to 96.98% | |
Specificity | 95.56% | 84.85% to 99.46% | |
PPV | 96.15% | 86.55% to 98.98% | |
NPV | 89.58% | 78.81% to 95. 21% | |
Decision tree (Preset: Complex tree, Split criterion: Gini’s diversity index, maximum number of splits: 100) | |||
Transverse | Accuracy | 85.00% | 76.47% to 91.35% |
Sensitivity | 87.76% | 75.23% to 95.37% | |
Specificity | 82.35% | 69.13% to 91.60% | |
PPV | 82.69% | 72.35% to 89.72% | |
NPV | 87.50% | 76.60% to 93.74% |
Ensemble (Preset: RUSBoosted trees, Ensemble method: RUSBoost, learner type: Decision tree, number of learners: 30, maximum number of splits: 20, learning rate: 0.1) | ||
Statistic | Value | 95% of Confidence Interval |
Accuracy | 96.60% | 94.90% to 97.86% |
Sensitivity | 94.34% | 90.32% to 97.04% |
Specificity | 97.70% | 95.81% to 98.89% |
PPV | 95.24% | 91.55% to 97.36% |
NPV | 97.25% | 95.34% to 98.40% |
Decision tree (Preset: Complex tree, split criterion: Gini’s diversity index, maximum number of splits: 100) | ||
Accuracy | 95.83% | 93.99% to 97.23% |
Sensitivity | 92.96% | 88.65% to 96.01% |
Specificity | 97.24% | 95.22% to 98.56% |
PPV | 94.29% | 90.42% to 96.65% |
NPV | 96.57% | 94.53% to 97.87% |
KNN (Preset: Weighted KNN, number of neighbors: 10, distance weight: Squared inverse, distance metric: Euclidean) | ||
Accuracy | 95.36% | 93.45% to 96.85% |
Sensitivity | 92.86% | 88.49% to 95.95% |
Specificity | 96.57% | 94.40% to 98.07% |
PPV | 92.86% | 88.76% to 95.54% |
NPV | 96.57% | 94.53% to 97.86% |
Methods | Feature Set | Classifier | Accuracy (%) | Sensitivity (%) | Specificity (%) |
---|---|---|---|---|---|
Proposed technique | Hybrid features | Ensemble | 97.00 | 96.23 | 97.87 |
Nugroho et al. 2017 [45] | Texture and geometry analysis | SVM | 91.30 | 92.00 | 89.60 |
Moon et al. 2014 [46] | Echogenicity and morphology | Logistic regression | - | 92.50 | - |
B. Singh et al. 2015 [47] | texture and shape features | ANN | 84.60 |
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Sadad, T.; Hussain, A.; Munir, A.; Habib, M.; Ali Khan, S.; Hussain, S.; Yang, S.; Alawairdhi, M. Identification of Breast Malignancy by Marker-Controlled Watershed Transformation and Hybrid Feature Set for Healthcare. Appl. Sci. 2020, 10, 1900. https://doi.org/10.3390/app10061900
Sadad T, Hussain A, Munir A, Habib M, Ali Khan S, Hussain S, Yang S, Alawairdhi M. Identification of Breast Malignancy by Marker-Controlled Watershed Transformation and Hybrid Feature Set for Healthcare. Applied Sciences. 2020; 10(6):1900. https://doi.org/10.3390/app10061900
Chicago/Turabian StyleSadad, Tariq, Ayyaz Hussain, Asim Munir, Muhammad Habib, Sajid Ali Khan, Shariq Hussain, Shunkun Yang, and Mohammed Alawairdhi. 2020. "Identification of Breast Malignancy by Marker-Controlled Watershed Transformation and Hybrid Feature Set for Healthcare" Applied Sciences 10, no. 6: 1900. https://doi.org/10.3390/app10061900
APA StyleSadad, T., Hussain, A., Munir, A., Habib, M., Ali Khan, S., Hussain, S., Yang, S., & Alawairdhi, M. (2020). Identification of Breast Malignancy by Marker-Controlled Watershed Transformation and Hybrid Feature Set for Healthcare. Applied Sciences, 10(6), 1900. https://doi.org/10.3390/app10061900