Predictive Model of Lyme Disease Epidemic Process Using Machine Learning Approach
Abstract
:1. Introduction
- Models and methods of epidemic processes simulation should be analyzed.
- Models and methods of the Lyme disease epidemic process simulation should be analyzed.
- Data on Lyme disease morbidity in the Kharkiv region (Ukraine) should be analyzed.
- The Lyme disease epidemic process machine learning model based on neural networks should be developed.
- The experimental study of the developed model with actual statistical data on Lyme disease morbidity should be provided.
- The results of the developed model should be compared with other Lyme disease epidemic process models.
- The development of a simulation machine learning model of the Lyme disease epidemic process and the comparison of the results with other approaches will allow for the estimating of the accuracy of the neural network approach applied to the simulation of the epidemic process simulation, specifically vector-borne diseases.
- The development of a machine learning model based on neural networks of the Lyme disease epidemic process will allow for the predicting of the epidemic situation without an additional measurement of climate parameters, using indicators of the number of ticks and their infection with borrelia in any selected territory to build the model.
- The application of the machine learning model based on neural networks to the Lyme disease epidemic process in the Kharkiv region (Ukraine) will allow for the estimating of its dynamics, contributing to closing a severe gap in understanding the spread of Lyme borreliosis in specific spatial and temporal settings, assessing the risks of Lyme disease in humans, and mitigating the impact of tick-borne infections in the future.
2. Background
2.1. Lyme Disease Epidemiology
2.2. Current Research Analysis
- Models aimed at the theoretical study of the epidemic process of Lyme disease;
- Simulation models aimed at modeling certain aspects of the epidemic process of Lyme disease.
3. Materials and Methods
3.1. Model of Lyme Disease Epidemic Process
- setting the initial conditions for all synaptic weights of the network in the form of sufficiently small random numbers so that the activation functions of neurons do not enter saturation mode at the initial stages of learning (protection from network “paralysis”);
- feed to the input of the network of method x and calculate the outputs of all neurons for given values ;
- for a given training vector d and the calculated intermediate outputs , the calculation of local errors for all layers;
- clarification of all synaptic scales by the formula
- input to the network input of the following method x, etc.
- Initialization of synaptic weights with small random values.
- Selecting the next training pair from the training set.
- Feeding the input vector to the input of the network.
- Network output calculation.
- Calculate the difference between the network output and the required output.
- Neural network weight adjustment to minimize error.
- Iteration of the algorithm until the error is minimized.
- The number of input neurons is 48.
- The number of hidden neurons is 72.
- The number of output neurons is 24.
3.2. Data Analysis
4. Results
- Creation of unfavorable conditions for the habitat of carriers of Lyme disease—clearing and landscaping of forest areas (clearing debris, removing deadwood, brushwood, undersized shrubs, mowing grass).
- Carrying out extermination measures (disinfestation, the use of a chemical method of combating ticks, deratization, the destruction of hosts of tick larvae and nymphs).
- systematic self- and mutual examination of clothing and body, which is extremely important for preventing ticks from being sucked. They are held every two hours of being in a natural focus without taking off their clothes;
- timely and correct removal of sucked ticks, if possible, in a medical facility;
- wearing protective clothing while staying in dangerous areas of the natural focus;
- impregnation of clothing with repellents or insect repellents. After contact with the treated fabric, after 3–5 min, all attached ticks become incapable of suction and fall off the clothes. You can scare away many ticks by applying repellent aerosols to clothing with encircling stripes.
- formation among the population of an understanding of the severity of the course of the disease and its consequences;
- instilling basic knowledge about the ways of infection, methods of collective and individual protection against ticks, the importance of emergency prevention of Lyme disease;
- developing the population’s skills to conduct self- and mutual examinations in endemic foci and use protective clothing, special dressing of ordinary clothing, individual protection against ticks, including the use of repellents.
- features of the attack of ixodid ticks on humans;
- the importance of measures of individual protection against ticks and the order of their application;
- the need to quickly remove a tick attached to the body by a medical professional or on their own, and in this case, immediately contact a doctor.
5. Discussion
6. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Appendix A
Model | Task | Outcome | Approach |
---|---|---|---|
Porto T. (1999) [47] | To define the threshold condition for a disease to enter a non-enzootic area depending on the various possible chains of transmission operating during the year. | Mathematical model of the life history of the tick to quantify the relative contributions of various transmission chains throughout the year. | Differential equations |
Kurtenback K., et al., (2006) [48] | To study how external factors and internal dynamics shape populations of B. burgdorferi sl. | Possible epidemiological parallels between B. burgdorferi sl and other transmissible zoonotic pathogens are described. | Compartmental model |
Wang W., Zhao X.Q. (2015) [49] | To formulate a mathematical model of Lyme disease, including a spatially heterogeneous structure. | It has been shown that the basic reproduction number R0 serves as a threshold value between extinction and persistence in the evolution of Lyme disease. | Differential equations |
Bisanzio D., et al., (2010) [50] | To describe the distribution of Ixodes ricinus ticks on mice and lizards from two independent studies. | The extreme aggregation of vectors on hosts, described by the power-law decay of the degree distribution, makes the epidemic threshold decrease with the size of the network and vanish asymptotically. | Bipartite networks |
Gaff H., et al., (2020) [51] | To upgrade the LYMESIM model to mimic the I. scapularis life cycle and transmission dynamics of B. burgdorferi.ss, which includes several modifications to increase the biological realism of the model and produce results that are easier to measure in the field. | The model showed the importance of temperature in host detection for nymph density, the importance of transmission from small mammals to ticks for the density of infected nymphs, and the survival of ticks as a function of temperature. | Compartmental model |
Hart T.M., et al., (2021) [52] | To reveal the mechanisms of tropism of the host of Lyme disease. | Different types of Lyme disease bacteria differ in their ability to survive in mice and quails, as well as in ticks that feed on human or quail blood after transmission. | Molecular study |
Lou Y, Wu J., Wu X. (2014) [53] | To understand the combined effect of seasonal temperature fluctuations and host community composition on transmission of the Lyme disease pathogen. | The relationship between host community biodiversity and disease risk varies, requiring more accurate measurements of the local environment, both biotic and abiotic. | Compartmental model |
Belli A., et al., (2017) [54] | To test whether ticks that acquire Lyme disease pathogens through co-feeding are infective to vertebrate hosts. | B. afzelii may use a co-feeding transfer to complete its life cycle. | Vector study |
Lis S., et al., (2016) [55] | To study the temperature-driven seasonality of Ixodes ricinus ticks and the transmission of B. burgdorferi sl in mainland Scotland. | The risk of Lyme disease currently peaks in the fall, about six weeks after the temperature peaks. | Multiagent model |
Zhang Y., Zhao X.Q. (2013) [56] | To study the reaction-diffusion model of Lyme disease taking into account seasonality. | In the case of a bounded habitat, we obtain a threshold result on the global stability of either disease-free or endemic periodic solution. In the case of an unbounded habitat, we establish the existence of the disease spreading speed and its coincidence with the minimal wave speed for time-periodic traveling wave solutions. | Compartmental model |
Imai C., et al., (2015) [57] | To study changes in immune population, strong autocorrelations, a wide range of plausible lag structures and association patterns, seasonality adjustments, large overdispersion. | For overdispersed models, alternative distribution models such as quasi-Poisson and negative binomial should be considered. | Time series regression |
Dumic I., Severnini E. (2018) [58] | To investigate how the activity of ticks and their survival depend on temperature and humidity. | A significant effect of temperature on the incidence of Lyme disease has been found. These impacts can be roughly described by an inverted U-shaped relationship consistent with tick survival patterns and host-seeking behavior. | Panel regression model |
Ogden N.H., et al., (2018) [59] | To study the factors that determine seasonality in a multi-year study in seven areas of the geographic range of I. scapularis | Temperature-independent diapause mechanisms explain some key observed variations in I. scapularis seasonality, and are responsible in part for geographic variations in I. scapularis seasonality in the United States. | Binomial regression model |
Zhao G.P., et al., (2021) [60] | To understand the ecological niches of major tick species and common tick-borne pathogens. | Suitable habitats for the 19 tick species are 14–476% larger in size than the geographic areas where these species were detected, indicating severe under-detection | Machine learning |
Nguyen A., Mahaffy J., Vaidya N.K. (2019) [61] | To study interactions between the main Lyme disease vectors involved: black-footed ticks (I. scapularis), white-footed mice (Peromyscus leucopus) and white-tailed deer (Odocoileus virginianus). | The presence of multiple vectors can have a significant impact on the dynamics and spread of Lyme disease. | Compartmental model |
Bobe J.R., et al., (2021) [62] | To investigate the prevention, diagnosis and treatment of Lyme disease during COVID-19 pandemic. | COVID-19 may further complicate diagnosis of Lyme disease since non-specific symptoms in these two conditions overlap and people may be spending more time outdoors. | Various approaches |
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Approach | Average Absolute Prediction Error |
---|---|
Differential equations | 21.4% |
Binomial chains | 18.3% |
Cellular automata | 17.2% |
Moving average method | 14.6% |
Exponential smoothing | 11.2% |
Brown polynomial model | 10.8% |
Adaptive Holt model | 10.2% |
Multiagent approach | 5.0% |
Neural network approach | 3.8% |
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Chumachenko, D.; Piletskiy, P.; Sukhorukova, M.; Chumachenko, T. Predictive Model of Lyme Disease Epidemic Process Using Machine Learning Approach. Appl. Sci. 2022, 12, 4282. https://doi.org/10.3390/app12094282
Chumachenko D, Piletskiy P, Sukhorukova M, Chumachenko T. Predictive Model of Lyme Disease Epidemic Process Using Machine Learning Approach. Applied Sciences. 2022; 12(9):4282. https://doi.org/10.3390/app12094282
Chicago/Turabian StyleChumachenko, Dmytro, Pavlo Piletskiy, Marya Sukhorukova, and Tetyana Chumachenko. 2022. "Predictive Model of Lyme Disease Epidemic Process Using Machine Learning Approach" Applied Sciences 12, no. 9: 4282. https://doi.org/10.3390/app12094282
APA StyleChumachenko, D., Piletskiy, P., Sukhorukova, M., & Chumachenko, T. (2022). Predictive Model of Lyme Disease Epidemic Process Using Machine Learning Approach. Applied Sciences, 12(9), 4282. https://doi.org/10.3390/app12094282