1. Introduction
The lack of population-level immunity within humans to avian influenza viruses presents a serious health threat [
1]. At any given time, this infectious disease has the potential to cause a pandemic. The transmission of highly pathogenic avian influenza H5N1 and H5N8 viruses is influenced by an expanding global poultry industry [
1,
2], and the widespread nature [
3] of these viruses is concerning based on the associated probability for an antigenic shift to occur. Pandemic preparedness is warranted in order to rapidly respond to demands placed on both health care systems and national economies [
4]. Within a preparedness strategy, the most important aspect for controlling the spread of infection is through vaccine allocation and administration [
5]. Stockpiling of vaccines remains an important pillar within this strategy; however, as influenza viruses are constantly mutating, a reduced vaccine effectiveness is likely if there is a mismatch between the vaccine and the circulating pandemic strain. This prompts that readiness efforts be made on the part of vaccine manufacturers for production of a strain-matched vaccine after a pandemic outbreak occurs, including development of new technologies which might be applied to aid in production efforts.
Approximately five to six months are needed to deliver approved vaccines of a new influenza strain to the public. A recognized bottleneck in this process is the two-to-three-month timeframe [
6] needed for regulatory laboratories to calibrate and distribute the critical reagents, namely antisera and lyophilized antigen standards, used in the single radial immunodiffusion (SRID) assay. Pandemic strains in particular pose a challenge to the reagent development process due to their novelty and the inherent inexperience that comes with producing the materials [
7]. Though SRID has been the globally accepted potency release assay for inactivated influenza vaccines since 1978 [
8], known limitations in addition to timely reagent production include a narrow dynamic range and low throughput [
9]. One of the lessons learned following the 2009 H1N1 pandemic was that an alternate potency assay was needed for a more rapid lot release of the influenza vaccine. An alternate potency assay which is independent of antisera would enhance the rapidity of delivering a vaccine by eliminating the SRID reagent distribution bottleneck.
Essential regulatory laboratories (ERLs) currently use isotope dilution mass spectrometry [
10] (IDMS) to assay and calibrate the quantity of hemagglutinin (HA), the main antigen of influenza, in primary liquid standards (PLS, whole inactivated virus material [
11]) prior to the PLS being used in SRID as a calibrant for lyophilized antigen standard reagents. IDMS is a validated physicochemical method which is accurate, precise, sensitive and subtype specific [
12]. The method is antisera/antibody free and instead uses subtype conserved synthetic peptides as calibration standards; this is advantageous in that the synthetic peptide reagents can be stored by vaccine manufacturers in advance of a pandemic. IDMS, however, is incapable of distinguishing between HA which is antigenic and HA which has lost its structural integrity. To assay for potency, that is, to specifically quantitate antigenic HA conformed to its pre-fusion (pre-F) structure [
13], a limited trypsin digestion (LTD) step was included prior to IDMS analysis in previous work using pre-pandemic H7N9 [
14] and H5N1 [
15] influenza vaccines. Under native conditions, the LTD pretreatment step is designed to specifically digest the susceptible [
16] HA1 chain of post-fusion (post-F) and/or stressed conformations of HA, which are conformational populations of lower antigenicity [
17] than that of pre-F HA. Pre-F HA is resistant to protease digestion due to its tightly folded conformation. In LTD-IDMS, pretreatment is followed by acetone precipitation of the remaining intact pre-F HA, which is next followed by removal of the soluble tryptic peptides using ethanol washes. The protein pellet is then resuspended, and finally quantitation of the pre-F HA enriched sample is performed by the remaining IDMS steps of denaturation, analytical tryptic digestion and multiple reaction monitoring (MRM) targeted analysis. The precipitation and washing steps must be performed so that tryptic digests from pretreatment do not interfere with the targeted analysis of tryptic peptides generated during the analytical digestion step. LTD-IDMS has been shown to be capable of distinguishing between unstressed and chemically or physically stressed HA, i.e., it is stability indicating, and also to correlate with SRID results, making it an attractive candidate as a rapidly deployable alternate potency assay.
Previously, we reported that a drawback to the LTD-IDMS method was its relatively laborious sample preparation steps. To simplify the method, a combination of enzymes (CombE) chymotrypsin and elastase was used instead of trypsin in the pretreatment step [
18]. As chymotrypsin and elastase cleave at the C-terminal side of aromatic and small hydrophobic residues, respectively, the pretreatment and analytical tryptic digestion steps are differential in regard to their proteolytic substrates. In this way, CombE pretreatment digests does not interfere in the targeted analysis of tryptic peptides from the analytical digestion step, thereby eliminating the need for the precipitation and washing steps. Applied to a cell-based adjuvanted quadrivalent seasonal influenza drug product material, the CombE-IDMS method was observed to have an overall agreement in trending under forced degradation conditions with LTD-IDMS and importantly with SRID. Here, we extend the CombE-IDMS method’s applicability beyond seasonal influenza strains and quantitate the potency of H5N1 and H5N8 MF59 adjuvanted and unadjuvanted monovalent materials under a range of stressors. Comparable results to those of SRID are observed, demonstrating the method’s capability to assay vaccine potency under conditions of an emerging pandemic while also eliminating the antisera reagent bottleneck.
2. Materials and Methods
2.1. Influenza Monovalent Vaccines
The starting materials used were monobulk drug substances. For research purposes only, these were Madine-Darby Canine Kidney cell-based drug substances. Monobulk materials of A/Turkey/turkey/1/2005 (H5N1) and A/Astrakhan/3212/2020 (H5N8) were each diluted to a 200 µg/mL target HA concentration using 1× PBS (Gibco, cat. 20012-027, Grand Island, NY, USA). These unadjuvanted formulations are hereafter referred to as H5N1c and H5N8c. The MF59 adjuvanted cell-based monovalent influenza vaccine materials aH5N1c and aH5N8c were each formulated by diluting A/Turkey/turkey/1/2005 (H5N1) monobulk and A/Astrakhan/3212/2020 (H5N8) monobulk, respectively, using 1× PBS and MF59 to a target HA concentration of 15 µg/mL and 50% MF59
v/
v for the peptide surrogate selection experiment (see
Supplementary Information for experimental details), and also to 200 µg/mL and 50% MF59
v/
v for the forced degradation experiment.
2.2. Unstressed Control Samples
In total, 500 µL of 1× PBS was added to 750 µL of the unadjuvanted and adjuvanted monovalents formulated to 200 µg/mL HA. These were kept at 5 °C until testing.
2.3. Sample Stress by Mild Low pH 6
To 750 µL of the unadjuvanted and adjuvanted monovalents formulated to a 200 µg/mL HA, 75 µL of a 0.5 M citric acid buffer, pH 6.0 (Alfa Aesar p/n J61815, Haverhill, MA, USA) was added and stored at room temperature for 17 h. The pH was measured to be 6.0 using a semi-micro pH electrode (Thermo Fisher Scientific, cat. 8102BN, Waltham, MA, USA) connected to an Orion 4 Star digital pH meter (Thermo Fisher Scientific, cat. 1115003). For 17 h, the materials were kept under this pH condition. They were then neutralized to pH 7.2 by the addition of 25 µL of a 1 M Tris-HCl, pH 8.0 (Thermo Fisher Scientific, cat. J22638-AP). Next, the pH was slightly dropped to 7.0 by the addition of 100 µL of 10× PBS (Gibco p/n 70013-032). Finally, 300 µL of 1× PBS was added, and the samples were placed at a 5 °C storage until it was time to test. Immediately prior to testing by SRID, 300 µL of the stressed materials was diluted into 600 µL of 1× PBS to bring the HA concentration into the working range of the assay. Stressed materials remained undiluted prior to assaying by CombE-IDMS.
2.4. Sample Stress under Elevated pH Conditions
The pH of 750 µL of the unadjuvanted and adjuvanted monovalents formulated to a 200 µg/mL HA was raised to 9.5 by the addition of a 50 µL 1 M Tris-HCl, pH 9.8 (Quality Biological, cat. 351-176-131, Gaithersburg, MD, USA). For 17 h, at room temperature, the materials were kept at this pH. Neutralization to pH 7.2 was performed by the addition of 350 µL of a 0.5 M citrate buffer (Alfa Aesar p/n J61815). A total of 100 µL of 10× PBS was then added, and the pH slightly decreased to 7.0. A total of 300 µL of 1× PBS was finally added, and these samples were placed at 5 °C until testing was executed. Immediately prior to testing by SRID, 300 µL of the stressed materials was diluted into 600 µL of 1× PBS to bring the HA concentration into the working range of the assay. Stressed materials remained undiluted prior to assaying by CombE-IDMS.
2.5. Sample Stress by Temperature
In total, 750 µL of the unadjuvanted and adjuvanted monovalents formulated to a 200 µg/mL HA were incubated at either room temperature or at 37 °C or at 56 °C in closed chambers, for 17 h at each temperature. Materials were then diluted using a 500 µL 1× PBS and stored at 5 °C until testing. A total of 300 µL of the materials incubated at room temperature and at 37 °C was diluted into 600 µL of 1× PBS to bring the HA concentration into the working range of the assay, while materials incubated at 56 °C remained undiluted prior to assaying by SRID. All temperature stressed materials remained undiluted prior to assaying by CombE-IDMS.
2.6. Oxidative Stress
A total of 12.5 µL of H2O2 (30% v/v) (Supelco, cat. 1.07298.0250, Bellefonte, PA, USA) kept on ice was added to 750 µL of the unadjuvanted and adjuvanted monovalents formulated to 200 µg/mL HA. The final concentration of H2O2 was 0.5%. For 17 h, these samples were kept at room temperature in the dark. Following this incubation period, 487.5 µL of 1× PBS was added. Immediately prior to testing by SRID, 300 µL of the stressed materials was diluted into a 600 µL of 1× PBS to bring the HA concentration into the working range of the assay. Stressed materials remained undiluted prior to assaying by CombE-IDMS.
2.7. Sample Stress by Freeze/Thaw
A total of 750 µL of unadjuvanted and adjuvanted monovalents formulated to a 200 µg/mL HA were diluted into 500 µL of 1× PBS and stored overnight in a −80 °C freezer. Materials were then moved from the freezer and allowed thawing under ambient room temperature conditions. Thawed samples were stored at 5 °C until testing.
2.8. Sample Stress by Low pH 3.5
To 750 µL of the unadjuvanted and adjuvanted monovalents formulated to a 200 µg/mL HA, 83 µL of a 0.5 M citric acid buffer, pH 3.0 (Alfa Aesar p/n J61391) was added and stored at room temperature for 20 min. The pH readout was 3.5. To neutralize, 181 µL of a 1 M Tris-HCl, pH 8.5 (Thermo Fisher Scientific, cat. J61038.AP) was added, and the pH was 7.2. Finally, for volumetric normalization, 236 µL of 1× PBS was added. At this point, the pH was measured to be 7.0, and samples were refrigerated at 5 °C.
2.9. Combination of Enzymes (CombE)
The CombE pretreatment protocol was described in Qian et al. [
18]. Importantly, 20 µL of each sample was incubated at 37 °C for two hours with chymotrypsin (Promega, cat. V1061, Madison, WI, USA) and elastase (Promega, cat. V1891) at ratio of 1:1:2, chymotrypsin:elastase:HA, the same ratio used previously on seasonal quadrivalent formulations.
2.10. SRID Reagents
SRID reference reagents for A/Turkey/turkey/01/2005 NIBRG-23 (H5N1) were sheep polyclonal heterologous [
19] reference antiserum A/Indonesia/05/2005 IBCDC-RG2 (H5N1) lot AS406 provided by the Therapeutic Goods Administration (TGA) (PO Box 100, Woden ACT 2606, Canberra, Australia) and reference antigen A/Turkey/Turkey/1/2005 NIBRG-23 (H5N1) lot H5-Ag-1510 provided by the Center for Biologics Evaluation and Research (CBER) (10903 New Hampshire Avenue, Silver Spring, MD 20993-0002). SRID reference reagents for A/Astrakhan/3212/2020 SEQHS_SYS22 (H5N8) were sheep polyclonal heterologous reference antiserum A/Indonesia/05/2005 IBCDC-RG2 (H5N1) lot AS406 provided by the Therapeutic Goods Administration (TGA) (PO Box 100, Woden ACT 2606, Canberra, Australia) and reference antigen A/Astrakhan/3212/2020 SEQHS_SYS22 (H5N8) lot 354398 provided by the CSL Seqirus (475 Green Oaks Parkway, Holly Springs, NC 27540).
2.11. SRID and IDMS Protocols
SRID and IDMS protocols were described in Qian et al. [
18]. For IDMS, the HPLC gradient was slightly modified in this work: namely, it was initialized at a 5% MPB from 0 to 1 min, increased to a 10% MPB from 1 to 1.5 min, increased to a 30% MPB from 1.5 to 7 min, ramped to a 98% MPB from 7 to 7.1 min and equilibrated until 8.1 min, and finally ramped down to a 5% MPB from 8.1 to 8.2 min and equilibrated until the end of the run at 11 min.
2.12. CombE-IDMS Method Prequalification
Following the forced degradation experiments, the CombE-IDMS method was prequalified for precision, linearity and accuracy characteristics. These assessments are described within
Supplementary Information. For routine testing of the method, a suggested control sample is also described.
4. Discussion
CombE-IDMS is a physicochemical method designed specifically to quantitate properly folded and antigenic HA. A primary advantage of the method is that synthetic peptides are used as calibrators for absolute quantitation of potent HA, and these peptide standards may be purchased and stocked by vaccine manufactures at any point in advance of an influenza pandemic, thereby circumventing the wait time needed to acquire antisera and reference antigen reagents used in the SRID method. We demonstrate in the selection of the surrogate peptide, LVLATGLR, monitored to report potency (see the
Supplementary Information for experimental details and results) that the method meets the following criteria: (1) it does not detect post-F HA, as LVLATGLR is maximally digested by CombE pre-treatment of low-pH stressed HA and (2) applying CombE pretreatment to unstressed material generates highly comparable (within 5%) results relative to the total amount of H5, measured by IDMS, within the sample. The latter met criterion indicates LVLATLGR of pre-F HA, which is presumed to comprise nearly the total amount H5 in the unstressed material, is conformed to be resistant to CombE pretreatment and remains contiguous for quantitation by MRM. For this alternate potency method, LVLATGLR was dually concluded to be the sole peptide used to quantitate both subtypes H5N1 and H5N8, lending evidence that the peptide may be generally monitored across H5Nx strains, though more strains need to be tested to further support this. Moreover, the peptide is highly conserved across H5Nx strains based on bioinformatic searches of sequence databases; for example, within the Influenza Virus Resource [
20], 3977 out of 4140 deposited H5Nx strains contained (K/R)LVLATGLRX (where X is any amino acid but proline) within full-length HA, a roughly 96.1% conservancy of the tryptic peptide. This conservancy is a critical attribute for stockpiling synthetic LVLATGLR peptide reagents in advance of a pandemic owing to the high probability of the peptide being found in a novel strain.
4.1. Thermal Stress
Cold chain deviations were simulated at three separate storage temperatures to assess the impacts on potency. After a 17 h storage at room temperature and 37 °C, HA potency was minimally impacted by either method. Conversely, storage at 56° C resulted in nearly the entire population of HA proteins being degraded and rendered undetectable by SRID, which aligned with CombE-IDMS results. A temperature of 56 °C is likely close to the melting temperature of HA [
21] and likely causes denaturation of epitopes and the targeted IDMS peptide.
4.2. pH Stress
A common means to induce deamidation on the side chains of either asparagine or glutamine residues is to subject the sample to a high-pH environment. A 17 h incubation at the elevated pH of 9.5 resulted in minimal impact on potency on all materials by both methods. If deamidation was induced somewhere on the protein by pH 9.5 stress, it ostensibly neither modulated the epitope conformations to which the polyclonal anti-HA antibodies bind nor conformed HA to a manner which increases its protease susceptibility.
A mildly acidic pH 6 was also investigated as a stressor. The release pH specification of bulk MF59 is between 6 and 7. Simulating the moment during formulation in which HA first contacts MF59 in its most acidic state was investigated by this stress. The H5N1 materials showed little impact on the potency of either method using pH 6 stress. The unadjuvanted and adjuvanted H5N8 materials assayed by SRID, however, displayed a minor drop in potency to 85% and 83% of the unstressed material, respectively. For the aH5N8c material, CombE-IDMS (85%) also observed this minor drop and agreed well with SRID. For the unadjuvanted H5N8c material under pH 6 stress, CombE-IDMS did not observe a minor drop but remained consistent with the unstressed material at a 99% potency. It is yet unclear why for H5N8c specifically a minor difference in results between methods is observed. One possible reason is the slight underestimation of potency, at 114 µg/mL, of H5N8c by CombE-IDMS to its target formulation of 120 µg/mL in the unstressed material (see
Table 1 for [HA] results in µg/mL), though this still is not enough to reconcile a roughly 15% potency decrease. Though the potency drop in question is minor, further investigation is planned to better understand the discrepancy.
Very low-pH 3.5 treatment resulted in no rings observed by SRID in all materials. Very low potency results, less than or equal to 7% relative to the unstressed sample for all materials tested, were found by CombE-IDMS. Here, inter-method results agreed to indicate a significant-to-complete loss of potent HA through conversion into the post-F conformation, a phenomenon which is well established [
13,
22].
4.3. Oxidative Stress
Hydrogen peroxide is known to cause methionine oxidations in proteins. As a result, the conformation of a protein may be altered and therefore rendered more susceptible to digestion by proteases [
23]. By CombE-IDMS, a minor loss of 11% potency of HA by a 0.5% H
2O
2 pretreatment was observed for both H5N1c and aH5N1c materials, while by SRID, there appeared to be no impact. Similarly, for H5N8c and aH5N8c, by CombE-IDMS, a loss of 13% and 21% was observed, respectively, while by SRID, the potency appeared to be unimpacted. Here, it is feasible that a subpopulation of HAs undergoes minor conformational changes near the fusion domain in the vicinity of the surrogate peptide LVLATGLR and renders that peptide susceptible to digestion, while for SRID, the epitopes remain recognizable by the polyclonal antibodies within the antisera.
4.4. Freeze Thaw Stress
Freeze/thaw (F/T) cycles are generally avoided in storing influenza cell culture vaccine materials because the buffer pH could be dramatically altered during the F/T process [
24] and subsequently impact the conformation of HA. For the H5N1 materials, potency by SRID resulted in slightly lesser degradation (58% and 68% of the unstressed control for the unadjuvanted and adjuvanted formulation, respectively) than potency measured by CombE-IDMS (resulting in 44% and 54% of the unstressed control for the unadjuvanted and adjuvanted formulations, respectively). For H5N8 materials, excellent agreement in loss of potency was observed between CombE-IDMS and SRID. For unadjuvanted H5N8c, SRID potency was 23% relative to the control, while that of CombE-IDMS was 28% relative to the control, and for adjuvanted aH5N8c SRID, potency was 32% relative to the control while CombE-IDMS was 33%. As an interesting side note, MF59 appeared to mildly protect the HA from F/T degradation, as a higher quantity of HA was observed by both methods in the adjuvanted material relative to the unadjuvanted material.
In summary, for adjuvanted and unadjuvanted H5N1 and H5N8 materials, CombE-IDMS correlated well with SRID under the two conditions which resulted in a total loss of potency (rings were not observed), i.e., a 56 °C thermal stress and pH 3.5 stress. The methods were also correlated under the condition which resulted in a moderate loss of potency, namely 1× F/T. Storage at 37 °C, room temperature storage and pH 9.5 had little impact on the potency measured by either method. Mildly acidic pH 6 stress resulted in good agreement between methods for all materials with the exception of H5N8c, in which SRID displayed a 15% loss in potency while no loss was observed by CombE-IDMS. For H5N8 in particular, CombE-IDMS appeared slightly more sensitive to a minor potency loss than SRID under the 0.5% H2O2 treatment; 87% and 80% potencies of the unstressed control by CombE-IDMS for unadjuvanted and adjuvanted formulations were observed, respectively, while 100% and 105% potencies of the unstressed controls by SRID for unadjuvanted and adjuvanted formulations were noted, respectively. This perhaps resulted from a minor conformational change in the microenvironment around the LVLATGLR peptide, rendering a small population of that sequence susceptible to protease cleavage, while the HA epitopes recognized by SRID antisera is not impacted by 0.5% H2O2 oxidative stress. H5N1 exhibited a minor discrepancy between methods under oxidative stress, in which CombE-IDMS resulted in an 89% relative potency for both adjuvanted and unadjuvanted formulations, whereas SRID did not result in any difference from its control sample. Though slight differences in the magnitude of results were observed between methods, the overall degradation trend by CombE-IDMS correlates with SRID for stress conditions which induce significant, moderate, minor and stable potencies relative to unstressed H5N1 and H5N8 materials.
Absolute potency also agreed well between methods for H5N8 materials as shown in
Table 1. These reportable values are critical for CombE-IDMS to be considered as an alternate method for SRID. For H5N1, absolute results were not consistent with SRID (data not shown). Lyophilized antigen standards for this material date to 2015; see Morgenstern et al. [
14] for explanatory discussions regarding discrepancies in absolute results between methods dependent on the calibration technique of the standards.
Moreover, no evidence of MF59 interference was detected, indicating the CombE-IDMS method may be applied to adjuvanted materials. And finally, though forced degradation studies are critical preliminary evaluations of stability indication capable of being executed in a short period of time, our current ongoing efforts are focused on the analysis of potency trending by CombE-IDMS under real-time long term (2–8 °C) and accelerated (23–27 °C/55–65% relative humidity) storage, which are more clinically relevant conditions.
5. Conclusions
The global numbers of avian infections and deaths from highly pathogenic influenza H5 viruses, including H5N1 and H5N8 subtypes, have risen in recent years [
25]. Though H5N1 is not known to spread well between mammals, the subtype was detected in intensively farmed minks on a Spanish farm in 2022, resulting in the culling of more than 50,000 animals [
26] and prompting concerns about the potential for interspecies transmission of the virus into humans [
27]. Recognition of the threat of an influenza pandemic originating from an avian H5Nx strain has resulted in preparedness measures taken by governments, global health agencies and vaccine manufacturers, which in part include the search for vaccine alternate potency assays. Recently, we described the antisera/antibody free CombE-IDMS assay applied to cell-based adjuvanted seasonal quadrivalent influenza vaccine material [
18]. Here, we applied the method to the study of cell-based H5N1 and H5N8 monovalent materials. Method development first involved the identification of a potency surrogate peptide susceptible to CombE pretreatment digestion in the post-F HA conformation while resistant to digestion in the pre-F HA conformation through optimization of the CombE:HA ratio using low-pH stressed and unstressed materials, respectively. Across both subtypes, the HA1 peptide LVLATGLR met the criteria as a potency surrogate (see
Supplementary Information for results). Subsequently, we demonstrated that under forced degradation conditions, the CombE-IDMS method can provide results comparable to the gold standard SRID potency assay. The method continues to provide encouraging performance as a rapid, QC-friendly alternate potency assay for influenza vaccines.