1. Introduction
Since the advent of therapeutic monoclonal antibodies (mAbs) in 1975, packed-bed chromatography remains the predominant technology of choice for the isolation and purification of these life-saving proteins [
1,
2]. The robustness of this technology is utilised as a standardised purification scheme to many mAbs derived from cell culture production systems. The pressure to accelerate drug development has challenged process scientists and vendors to continuously improve approaches to shorten product development timelines, ideally at reduced cost with little or no impact on product quality. This is observed in the upstream process, where improvement efforts resulting in approximately five-fold increases in mAb titres have been realised [
3,
4,
5]. This increase in product yield has shifted the bottleneck of the production process from upstream to downstream, principally the mAb capture step [
4,
6].
Protein A (ProtA) resins are the mainstay for mAb capture and can constitute more than 50% of the downstream cost of mAb production [
7,
8,
9]. The focus on this step for efficiency gains in the downstream process can have a significant impact. Attributes including dynamic binding capacity, resin lifetime, and resin capacity utilisation are key determinants of the cost of mAb production and the measure of the efficiency and value of the process step. As with many resin-based chromatography media, the narrow pore size range 60–120 nm of the ProtA resin can be impacted by diffusional mass transfer for mAb capture [
8]. Hence, operation at residence times in the order of minutes is required to attain the desired pressure drop and load density, resulting in extended cycle times.
The emergence of membrane-based and fibre-based capture chromatography, where mass transfer is governed primarily by convection, can be a rapid process due to the micron-size pores and consequent binding site accessibility of these devices [
10,
11,
12]. However, mAb binding capacity is negatively impacted by convection mass transfer. This limitation appears to have been overcome via recent improvements in ProtA chromatographic membrane and fibre devices [
13,
14,
15]. Some improvements combine both convection and diffusion mass transfer mechanisms to attain mAb binding capacities comparable to those of conventional resins (>30 g/L), but with a significant reduction in residence time (mins to s) [
15]. This is made possible by the relatively wider pore size range, 3–5 µm, of the base matrix, which supports convection, and porous supports featuring 2–3 µm diffusive regions, which improves mAb binding capacity. With cycle times of <20 min compared to hours, productivity gains more than 10× that of packed bed chromatography have been reported [
14,
15,
16]. The key value proposition of this technology is the full capacity utilisation of the membrane in a single instance of batch purification, which can have a positive impact on the cost of goods sold.
There are additional benefits in using an affinity membrane for mAb capture, such as a reduction in facility footprint and the elimination of column handling and its associated bioburden and batch-to-batch cross contamination risks. The short cycle times would mean that the duration of process development and characterisation campaigns could be significantly reduced. For example, a 100-cycle membrane lifetime study could be completed in <40 h on a chromatographic membrane, compared to four weeks on a packed bed column.
In this study, we assessed the performance and scalability of the Sartobind® Rapid A affinity membrane for mAb capture. To our knowledge, this was the first time the new Rapid A membrane has been used in combination with the novel MU-RCC at pilot scale to process 100 L of CH. MabSelect™ PrismA was used as a benchmark for ProtA resins.
2. Materials and Methods
2.1. ProtA Chromatography Devices
The ProtA chromatography membrane device used in this study was the Sartobind® Rapid A convective-diffusion membrane (Sartorius, Göttingen, Germany). A 1 mL membrane volume (MV) device (3 mL hold-up volume) was used for initial development work, with scaleup assessment conducted on a 75 mL device (200 mL hold-up volume). A fixed bed height of 4 mm applied to both membranes.
ProtA resin MabSelect™ PrismA resin (Cytiva, Uppsala, Sweden) was purchased in a HiScreen™ chromatography column format (10 cm bed height and 4.7 mL bed volume). This format is a good model for process-scale columns based on our experience. The resin was used as a benchmark reference for membrane chromatography.
2.2. Monoclonal Antibody
A model human IgG4 mAb with pI 8.6 was used in this study. The mAb was expressed in a proprietary Chinese hamster ovary (CHO) cell line (Melbourne, Australia) in suspension culture using a stirred-tank fed-batch approach. CH was frozen at −80 °C and thawed as required for the capture chromatography experiments. Four batches of comparable CH derived from 5 L to 500 L bioreactors were used in this study (
Table 1). Bench scale experiments were performed with CH batches CH1, CH2, and CH3, whereas CH4 and CH5 were used for the pilot scale runs.
2.3. Buffers and Reagents
The buffers used in the purification scheme are proprietary to CSL Innovation Pty Ltd. (Melbourne, Australia). However, results similar to what is presented in this paper can be achieved using the buffers published elsewhere for the purification of different mAb isotypes using the Sartobind
® Rapid A membrane device [
15,
17]. The designation, application, and pH ranges of the solutions used in this study are listed in
Table 2. Chemicals for the preparation of chromatography solutions were sourced from Merck (Darmstadt, Hesse, Germany).
2.4. Analytical Tools
2.4.1. Protein Concentration Using ProtA-HPLC
Protein concentrations of CH and flowthrough samples were determined through analytical high-performance affinity chromatography (ProtA-HPLC) using a POROS™ ProteinA 20 µm column (2.1 mm ID × 30 mm) with an UltiMate 3000 System from ThermoFisher Scientific (Waltham, MA, USA) equipped with a UV detection system. The reference standard used was a bulk purified GMP-grade version of the model mAb used in this study. The tests were performed at 2.0 mL/min, with buffer A—35 mM Tris, 150 mM NaCl, pH 7.8—and buffer B—50 mM Citrate, 250 mM NaCl, pH 3.0—and a sample application of 50 µg. Samples of the purified protein (eluate pool) were tested with ProtA-HPLC. Results from this test were used for mAb yield calculations.
2.4.2. Monomer and Aggregate Determination via Size Exclusion HPLC
Monomer and aggregate levels were determined through analytical size exclusion chromatography (SEC-HPLC) using an ACQUITY UPLC BEH200 SEC 1.7 µm column (4.6 mm ID × 150 mm) from Waters with an UltiMate 3000 System from ThermoFisher Scientific. The runs were performed at 0.2 mL/min, with 20 µg sample application and 100 mM MOPS, 210 mM NaCl, pH 7.0 mobile phase. The elution profile was monitored at 280 nm. The proportion of monomer and aggregate in the analytes was estimated through integrating the peak areas of the early-eluting aggregate peak(s), late-eluting fragment peak(s), and the monomer peak.
2.4.3. Host Cell Protein and Residual ProtA via Enzyme-Linked Immunosorbent Assay (ELISA)
The host cell protein (HCP) concentration of product pools was measured using a CHO HCP 3rd Generation ELISA Kit F550-1 (Cygnus Technologies, Leland, NC, USA). The HCP concentration of the analytes was normalized to mAb concentration, from which the HCP log reduction value (LRV) across the capture step was calculated. A ProtA ELISA Kit (9333-1) from Repligen, designed for the detection and quantitation of residual MabSelect SuReTM ligand, was used for the detection of leached ProtA from the chromatographic devices.
2.4.4. HCP Identification using Mass Spectrometry (MS)
HCP species were identified in product pools using liquid chromatography–tandem mass spectrometry (LC-MS/MS). Data collection was performed using a ThermoFisher Scientific UltiMate 3000 HPLC connected to a Bruker Qq-TOF Impact II MS. Sample preparation was performed for 100 µg of total protein, which underwent trypsin digestion (ThermoFisher Scientific, SMART soluble), followed by dithiothreitol (DTT) reduction, iodoacetamide alkylation, and DTT neutralization. Buffer A was 0.1% formic acid (FA) in water and Buffer B was 0.1% FA in acetonitrile. For analysis, 32 µg of sample was injected and separated using a Waters CSH™ 2.1 mm × 100 mm, C18, 2.5 µm, 130 Å ultra-high-performance liquid chromatography column at a flow rate of 0.2 mL/min and with a gradient from 3 to 30% Buffer B over 46 min with a 40 °C column temperature. The MS was operated in electrospray ionisation (ESI) positive ion mode, with an MS1 and MS2 scan range of 100–2200 m/z. The eluting peptides were ionised using ESI and fragmented via collision-induced dissociation. The resulting MS spectra were analysed using ProteomeDiscoverer 2.1, where the Sequest HT search engine was used to interrogate the data against a concatenated target and decoy database. The database included the reference sequence of the CHO proteome (RefSeq Assembly Accession: GCF_000223135.1), a list of common contaminating proteases and sample handling proteins (cRAP database), sequences of the IgG4 mAb, and reversed sequences for all entries. Peptide spectral matches (PSMs) were grouped by protein and considered a true positive if the PSMs and the protein had a less than or equal to 1% chance of being a false positive (false discovery rate ≤ 1%), and if the protein was identified with ≥2 unique peptides in duplicate preparation of the same sample.
2.4.5. hcDNA via qPCR
Host cell DNA (hcDNA) was quantified using the highly sensitive resDNASEQ™ Quantitative CHO DNA Kit (PCR) from ThermoFisher Scientific (Waltham, MA, USA).
2.5. Chromatography Equipment
A Cytiva ÄKTA Pure 25 chromatography system was used for bench-scale experiments with the Sartobind® Rapid A membrane (MV = 1.0 mL) and MabSelect™ PrismA column (Column Volume, CV = 4.7 mL). UV monitor (U9-M) was measured using simultaneous triple wavelength detection at 10 Hz with a 2 mm flow cell pathlength (280 nm). Sartorius’ prototype MU-RCC skid was used for scale-up experiments with Sartobind® Rapid A (MV = 75 mL). The skid utilises two UV detectors positioned upstream and downstream of the chromatography device. Both UV flow cells are 2 mm in pathlength with a detection frequency of 4 Hz. A flow rate of 750 mL/min was used for the Rapid A pilot device.
2.6. Dynamic Binding Capacity Measurement
Dynamic binding capacity (DBC) of the chromatographic devices at 10% mAb breakthrough (DBC10%) was assessed on the ÄKTA Pure 25 chromatography system using CH1 as feedstock. For the Rapid A membrane, product load residence times of 0.14, 0.20, 0.33, and 1.0 min were studied. For the MabSelect™ PrismA resin, residence times of 2, 3, 4, and 6 min were studied. To ensure product breakthrough, the membrane was loaded to 90 g/L, whereas the MabSelect™ PrismA resin was loaded to 73 g/L. The mAb breakthrough was assessed using two complementary approaches.
First, flowthrough fractions were collected during the loading phase and analysed for mAb concentration for the estimation of 10% mAb breakthrough.
The second approach was based on step changes in the UV-280 nm chromatogram. Here, the 100% breakthrough absorbance (UV
max) was determined through bypassing the column and recording the intensity of the UV-280 nm signal at steady state. The steady state UV reading during product load (UV
offset) was used as baseline for contaminant offset. From the UV profile of the DBC
10% experiment, the volume (V
x) during loading, at which the UV reading was approximately 10% of the difference between UV
max and UV
offset, was estimated and used in the DBC
10% calculation as follows:
where V
0 is the holdup volume of the system and device, C is the mAb concentration of the CH, and V
membrane|column is the volume of membrane or resin in the chromatographic device.
2.7. Determination of Productivity
Productivity is described as the rate of mAb production per litre of chromatography media. The productivity of the chromatographic devices was calculated using the following relationship:
The unit of productivity is gram of mAb per L of chromatography media per hour (g/L/h).
2.8. ProtA Capture Chromatography
The chromatography sequence for mAb capture from the CH, using the various chromatographic systems and devices, is summarized in
Table 3.
4. Discussion
The application of chromatographic membrane devices in therapeutic protein purification is not novel [
10,
18]. The binding capacity limitations of these devices in comparison to resins have restricted commercial usage to the more economically viable flowthrough operation. Recent improvements in the DBC of membrane formats offer an attractive integrative solution for processing high-titre cell culture preparations within an acceptable process duration. This was the main driver for assessing the performance and scalability of the Sartobind
® Rapid A affinity membrane. In addition to the benefits of chromatographic resins, membranes may offer significant productivity gains, flexible linear scale-up, and small facility footprint. The selection of MabSelect™ PrismA resin as a benchmark for ProtA affinity adsorbents is based on our experience with regular assessments of vendor offerings and scale-up of ProtA adsorbents for mAb capture.
The comparatively higher DBC
10% observed for the PrismA resin is a complement of extended residence time to its diffusion-driven mass transfer properties [
8] and is expected to drop precipitously with increasing flow rate [
19]. It is interesting, though, that the 63.1 g/L DBC
10% achieved at the shortest residence time (2 min) operated on the PrismA resin was attainable on the membrane device at 6× shorter residence time (0.33 min). Indeed, for the protein load residence times studied, the membrane was operated at flow rates up to 9× faster than that of the resin.
The performance of Sartobind
® Rapid A membrane in mAb capture has previously been reported [
9,
15]. The characterisation of HCP species in effluents from the smaller membrane device via mass spectrometry, and the use of an IgG4 isotype in this work, provides additional insights to previous work [
15,
17]. Briefly, the DBC and impurity profile of the eluate pools from the Rapid A device show comparable results even for the different mAb isotypes and different process solutions applied in these studies. Other affinity-based fibre and membrane devices with improved mAb binding capacities have also been reported [
14]. The work reported here is, to our knowledge, the first assessment of the Rapid A device at pilot scale using the MU-RCC membrane chromatography system and its comparison to smaller-scale devices.
The exploitation of both convection and diffusion mass transfer mechanisms in the design of the Rapid A membrane appear to have overcome the DBC limitation, which to date has previously challenged affinity-based chromatographic membranes in protein purification [
15]. With DBC
10% in excess of 55 g/L at residence times as short as 8.4 s, the challenges of processing high-titre cell culture fluid may be overcome. For an affinity membrane, these values are a significant improvement compared to those previously reported [
9]. The data reported here demonstrate that the membrane-based adsorbent may be more effective in the partitioning of process- and product-related impurities including hcDNA, HCP, and aggregates from the target mAb, consistently delivering mAb purities of >98% over a lifetime of 100 cycles. This could potentially reduce the number of subsequent polishing steps required in a mAb purification scheme, depending on the expected quality target product profile. The apparent improvement in HCP clearance on the membrane with cycle number is likely due to a reduction in non-specific binding of HCP to the base matrix. We have observed a similar trend for ProtA resins. It has been reported that the Rapid A membrane could be re-used for up to 200 cycles for the one batch, as trends of key performance indicators including mAb recovery, purity, and pressure drop across the membrane only showed marginal shifts from initial performance for the different mAb isotypes studied [
15]. The 8.3% drop in the DBC of the membrane following 100 repeated uses may be a function of ligand leaching. [
17]
The high product pool volumes expressed by the Rapid A device and consequent dilute mAb concentration may present volume handling complications where large batch sizes are involved. The increased elution volume is likely a combination of mAb desorption kinetics on the device, dead volume in the capsule, and system hold-up volume. Such challenges could be addressed on the vendor side via ligand selection and the design of units with smaller hold-up volumes, or the application of single-pass tangential flow filtration systems by process scientists to reduce product bulk volumes.
The purification of 100 L of CH on a 75 mL Sartobind® Rapid A device using the MU-RCC system is, to our knowledge, the first of its kind for mAb purification at pilot scale. The pilot-scale device was exposed to a total of 57 purification cycles with an aggregate duration of circa 19 h. By comparison, a 900 mL PrismA column would be required to process the same amount of material over four purification cycles for a duration of approximately 14 h, not accounting for column qualification and pre- and post-sanitization activities. The adsorbent volume requirements coupled with capacity utilisation would present cost advantages in the case of the membrane format. The 45 g/L load density used for bench-scale studies appeared to be at the limits of the dynamic binding capacity of the membrane device, which was more apparent for the first lot of pilot-scale runs. On adjustment of the load density to 35 g/L, the process and product attributes were comparable between the 1 mL and 75 mL membrane devices, demonstrating scalability.
We considered a process-scale scenario for the capture of a 2000 L mAb batch with similar titres to CH1–CH5.
Table 6 shows parameter estimates for selected chromatography media volumes for the Sartobind
® Rapid A membrane and the high-capacity MabSelect™ PrismA resin. Values for the PrismA resin are based on our validated 2000 L scale manufacture of this mAb. Rapid A MVs of 0.8 L, 1.6 L, and 3.2 L were considered and compared to a 32 L MabSelect™ PrismA column. It is noteworthy that the scale-up of a Rapid A device can be achieved using either large-volume capsule formats or stacks of modular cassette formats [
17]. The load densities were adjusted to accommodate processing of the entire batch, which is reflected in the corresponding cycle numbers.
When using the membrane (40× less ProtA media, 17% less product load per litre, and 10× shorter cycle time), a significant number of purification cycles would be required to process 4 kg of mAb, totalling approximately 48.6 h in duration for a 0.8 L Rapid A. The high cycle count, albeit with lifetime expectation, results in up to 73× improvement in ProtA media capacity utilisation per batch with an expected 10× gain in productivity compared to the resin. The high productivity in the membrane scenario comes at the expense of buffer usage and step duration which are 2.5× and 4× that of the resin, respectively.
With the improved product purity levels generated by the membrane, the further refinement of downstream polishing and clarification steps could be made redundant. Further studies are required, as this would reduce the overall buffer consumption impact between membrane- and resin-based purification schemes. The small facility footprint and single-use application of this technology may be suited to a multi-product facility.