Detection of Haplosporidium pinnae from Pinna nobilis Faeces
Abstract
:1. Introduction
2. Materials and Methods
2.1. Collection of Biological Materials
2.2. DNA Extraction
2.3. Gene Amplification and Sequencing
2.4. qPCR Quantification of Haplosporidium Pinnae in Pinna Nobilis
3. Results
3.1. PCR Detection of Haplosporidium sp. in Pinna nobilis
3.2. Confirmation of Haplosporidium pinnae Infection of P. nobilis by Sanger Sequencing
3.3. Quantification of Haplosporidium pinnae in Pinna nobilis
4. Discussion
5. Conclusions
- − A kit for blood and tissue DNA extraction renders high-quality DNA from P. nobilis mantle/digestive epithelium and faeces samples.
- − We detected Haplosporidium sp. in P. nobilis mantle and faeces using conventional PCR.
- − Sanger sequencing confirmed H. pinnae in mantle and faeces of infected P. nobilis.
- − About 7.1% of P. nobilis individuals (n = 28) from Mar Menor lagoon (SE Spain) are infected with H. pinnae.
- − P. nobilis-infected individuals contain 2.4 × 10−10–7.3 × 10−9 pg H. pinnae DNA µg−1 tissue.
- − P. nobilis faecal DNA analysis using PCR and qPCR can be used to monitor infection and recovery from H. pinnae.
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Sample Code | Date | Location | Sample | DNA Extraction Method | PCR (HapF1/HapR2) | PCR (LCOI1490/HC02198) |
---|---|---|---|---|---|---|
M1 | FEB-2021 | Local Supermarket | Mytilus edulis (Mantle necropsy) | CTAB | nt | nt |
M2 | FEB-2021 | Local Supermarket | DNeasy PowerSoil Pro Kit | nt | nt | |
M3 | FEB-2021 | Local Supermarket | DNeasy Mini Plant Kit | nt | nt | |
M4 | FEB-2021 | Local Supermarket | DNeasy Blood & Tissue Kit | nt | nt | |
PN1.1 | JUL-2021 | Pueblo Cálido (Mar Menor) | Pinna nobilis (Mantle biopsy) | CTAB | nt | nt |
PN1.2 | JUL-2021 | Pueblo Cálido (Mar Menor) | DNeasy PowerSoil Pro Kit | nt | nt | |
PN1.3 | JUL-2021 | Pueblo Cálido (Mar Menor) | DNeasy Mini Plant Kit | nt | nt | |
PN1.4 | JUL-2021 | Pueblo Cálido (Mar Menor) | DNeasy Blood & Tissue Kit | nt | nt | |
PNE 1 | JUL-2021 | Perdiguera Island NW (Mar Menor) | DNeasy Blood & Tissue Kits | nt | nt | |
CP1 | FEB-2020 | Perdiguera Island NW (Mar Menor) | nt | nt | ||
CP2 | FEB-2020 | Perdiguera Island SW (Mar Menor) | nt | nt | ||
CP4 | FEB-2020 | Perdiguera Island SW (Mar Menor) | nt | nt | ||
PN1 | FEB-2020 | Perdiguera Island SW (Mar Menor) | - | + | ||
PN2 | FEB-2020 | Baron Island (Mar Menor) | - | + | ||
PN3 | FEB-2020 | Baron Island (Mar Menor) | - | + | ||
PN5 | MAY-2020 | Santiago de la Ribera (Mar Menor) | - | + | ||
PN6 | MAY-2020 | Baron Island (Mar Menor) | - | + | ||
PN7 | MAY-2020 | Baron Island (Mar Menor) | - | + | ||
PN8 | MAY-2020 | Baron Island (Mar Menor) | - | + | ||
PN9 | JUN_2020 | Pueblo Cálido (Mar Menor) | Pinna nobilis (Mantle necropsy and digestive gland) | + | + | |
PN10 | JUN_2020 | Pueblo Cálido (Mar Menor) | - | + | ||
PN11 | JUN_2020 | Baron Island (Mar Menor) | - | + | ||
PN12 | JUN_2020 | Baron Island (Mar Menor) | - | + | ||
PN13 * | JUL_2020 | IRTA (Delta del Ebro) | + | + | ||
PN14 * | JUL_2020 | IRTA (Delta del Ebro) | + | + | ||
PN16 | APR-2021 | Baron Island (Mar Menor) | - | + | ||
PN17 | APR-2021 | Baron Island (Mar Menor) | - | + | ||
PN18 | APR-2021 | Perdiguera Island NW (Mar Menor) | - | + | ||
PN19 | APR-2021 | Perdiguera Island NW (Mar Menor) | - | + | ||
PN20 | APR-2021 | Perdiguera Island SW (Mar Menor) | - | + | ||
PN21 | APR-2021 | Baron Island (Mar Menor) | - | + | ||
PN22 | APR-2021 | Baron Island (Mar Menor) | - | + | ||
PN15 | FEB-2020 | Perdiguera Island NW (Mar Menor) | Pinna nobilis (Faeces) | - | + | |
PN4 | MAY-2020 | Baron Island (Mar Menor) | + | + | ||
PN 23 ** | APR-2021 | Galan beach (Mar Menor) | nt | + | ||
PN 24 ** | APR-2021 | Galan beach (Mar Menor) | nt | + | ||
PN25 | OCT-2021 | El Pedrucho (Mar Menor) | - | - | ||
PN26 | OCT-2021 | El Pedrucho (Mar Menor) | - | - | ||
PN27 | OCT-2021 | El Pedrucho (Mar Menor) | - | - | ||
PN28 | OCT-2021 | El Pedrucho (Mar Menor) | - | - | ||
PN29 | OCT-2021 | El Pedrucho (Mar Menor) | - | - | ||
PN30 | OCT-2021 | El Pedrucho (Mar Menor) | - | + |
Haplosporidium Primers | Sequence (5′-3′) | Amplicon Size (bp) | Tm | Reference |
---|---|---|---|---|
HapF1 | GTTCTTTCWTGATTCTATGMA | 331 | 49 | [18] |
HapR2 | GATGAAYAATTGCAATCAYCT | 331 | 49 | |
HPNF3 | CATTAGCATGGAATAATAAAACACGAC | 600 | 55 | |
HPNR3 | GCGACGGCTATTTAGATGGCTGA | 600 | 55 | |
Pinna nobilis Primers | Sequence (5′-3′) | Amplicon Size (bp) | Tm | Reference |
LCOI1490 | GGTCAACAAATCATAAAGATATTGG | 710 | 40 | [19] |
HC02198 | TAAACTTCAGGGTGACCAAAAAATCA | 710 | 40 |
Sample | Most Similar Species (BLAST) | Query Cover | Identity |
---|---|---|---|
PN4 | Haplosporidium pinnae (MN689716.1) | 98% | 96.08% |
PN9 | Haplosporidium pinnae (MN689716.1) | 99% | 90.83% |
PN13 | Haplosporidium pinnae (MN689716.1) | 100% | 100% |
PN14 | Haplosporidium pinnae (MN689716.1) | 100% | 100% |
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Lopez-Nuñez, R.; Cortés Melendreras, E.; Giménez Casalduero, F.; Prado, P.; Lopez-Moya, F.; Lopez-Llorca, L.V. Detection of Haplosporidium pinnae from Pinna nobilis Faeces. J. Mar. Sci. Eng. 2022, 10, 276. https://doi.org/10.3390/jmse10020276
Lopez-Nuñez R, Cortés Melendreras E, Giménez Casalduero F, Prado P, Lopez-Moya F, Lopez-Llorca LV. Detection of Haplosporidium pinnae from Pinna nobilis Faeces. Journal of Marine Science and Engineering. 2022; 10(2):276. https://doi.org/10.3390/jmse10020276
Chicago/Turabian StyleLopez-Nuñez, Raquel, Emilio Cortés Melendreras, Francisca Giménez Casalduero, Patricia Prado, Federico Lopez-Moya, and Luis Vicente Lopez-Llorca. 2022. "Detection of Haplosporidium pinnae from Pinna nobilis Faeces" Journal of Marine Science and Engineering 10, no. 2: 276. https://doi.org/10.3390/jmse10020276
APA StyleLopez-Nuñez, R., Cortés Melendreras, E., Giménez Casalduero, F., Prado, P., Lopez-Moya, F., & Lopez-Llorca, L. V. (2022). Detection of Haplosporidium pinnae from Pinna nobilis Faeces. Journal of Marine Science and Engineering, 10(2), 276. https://doi.org/10.3390/jmse10020276