Quality and Utility of Information Captured by Surveillance Systems Relevant to Antimicrobial Resistance (AMR): A Systematic Review
Abstract
:1. Introduction
- What is the effectiveness of AMR-relevant surveillance systems in providing information that can be used to inform healthcare professionals?
- What is the acceptability of these systems to users?
2. Materials and Methods
- Prospective observational studies (controlled and uncontrolled before and after studies).
- Retrospective observational evaluations, including case-control studies, retrospective cohort studies, and audits. Data sources included primary data collected for research and secondary data (for example, health insurance claim data).
- Interventions using an experimental design.
- Bacteria whose antibiotic susceptibility status was recorded by the surveillance system.
- Bacteria relevant to AMR. A list was collated from the key AMR threats that have been identified by the WHO [4], the CDC [5], European Centre for Disease Control (ECDC) [6], European Food Safety Authority (EFSA) [7], and the key drug-bug combinations identified by Public Health England in the UK AMR Strategy [8].
- The following types of evaluation study were excluded from the review:
- Evaluations of public surveillance systems that monitor non-bacterial microorganisms (for example, viruses or fungi).
- Evaluations of surveillance systems that monitor bacterial microorganisms that are not on any of the priority lists described in the inclusion criteria above.
- Screening systems that are limited to a single or group of hospitals, and where the information is not shared outside the hospital system.
- Studies published prior to 1988, when the first CDC guidelines for evaluating Public Health Surveillance systems were published.
- Articles published in languages other than English.
2.1. Outcomes
2.2. Quality Assessment of Studies
2.3. Analysis
3. Results
3.1. Outcome of Study Identification Process
3.2. Characteristics of Included Studies
3.2.1. Study Design
- Use of another surveillance system (such as the CDC Emerging Infections Programme) as a high-quality reference standard against which to compare (for example, Nguyen et al. [12])
- Comparison between different methods of data collection and reporting, including comparing electronic reporting against other forms of reporting, for example, Saeed et al. [13].
3.2.2. Quality of Studies
3.2.3. Setting
3.2.4. Surveillance Systems’ Attributes Evaluated
3.2.5. Health Conditions and Microorganisms Monitored by Systems
3.3. Performance of Systems in Relation to Attributes Assessed
3.3.1. Specificity
3.3.2. Usefulness
3.3.3. Completeness
3.3.4. Concordance
3.3.5. Timeliness
3.3.6. Positive Predictive Value (PPV)
3.3.7. Representativeness
3.3.8. Acceptability
3.3.9. Flexibility
3.3.10. Simplicity
3.3.11. Stability
4. Discussion
Strengths and Limitations of the Research
5. Conclusions and Recommendations
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Appendix A. Definitions of Attributes Identified as Important for Determining the Usefulness of a Surveillance System
Appendix B. Search Terms
Appendix C. Attributes Used in Evaluations
Author | Acceptability | Completeness (Proportion of Cases) | Completeness (Variables Collected for Each Case) | Concordance | Flexibility | Positive Predictive Value (PPV) | Representativeness | Simplicity | Specificity | Stability | Timeliness | Usefulness |
Heunis | √ | |||||||||||
Reijn | √ | |||||||||||
Devine | √ | |||||||||||
Gimenez-Duran | √ | |||||||||||
Auld | √ | √ | ||||||||||
Podewils | √ | √ | √ | |||||||||
Trei | √ | √ | ||||||||||
Lo | √ | √ | ||||||||||
Nguyen | √ | |||||||||||
Cojocaru | √ | |||||||||||
San Gabriel | √ | |||||||||||
Lirio | √ | |||||||||||
Santos | √ | |||||||||||
Takahashi | √ | |||||||||||
Grills | √ | √ | √ | √ | √ | |||||||
Khue | √ | |||||||||||
Guerrin-Tran | √ | √ | ||||||||||
da Silva | √ | √ | √ | √ | ||||||||
Mancuso | √ | √ | ||||||||||
Teo | √ | |||||||||||
Saeed | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | ||
Alkhalawi | √ | √ | √ | |||||||||
Jansson | √ | |||||||||||
Marks | √ | |||||||||||
Jansson | √ | |||||||||||
Severi | √ | √ | ||||||||||
Birkhead | √ | |||||||||||
Dominguez | √ | |||||||||||
Kirk | √ | |||||||||||
Altmann | √ | |||||||||||
Kang | √ | √ | ||||||||||
Migliori | √ | √ | ||||||||||
Trepka | √ | |||||||||||
Nicolay | √ | √ | ||||||||||
Curtis | √ | |||||||||||
Driver | √ | √ | ||||||||||
Tanihara | √ | |||||||||||
Samaan | √ | √ | √ | √ | √ | |||||||
Stenhem | √ | √ | ||||||||||
Van Leth | √ | |||||||||||
Jones | √ | |||||||||||
Olowokure | √ | |||||||||||
Sprinson | √ | √ | √ |
Appendix D. Attributes Examined by Health Condition or Microorganism
Condition/Microorganism | Acceptability | Completeness (Proportion of Cases) | Completeness (Variables Collected for Each Case) | Concordance | Flexibility | Positive Predictive Value (PPV) | Representativeness | Simplicity | Specificity | Stability | Timeliness | Usefulness |
TB | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ | √ |
Salmonella/salmonellosis | √ | √ | √ | √ | √ | |||||||
Infections with penicillin-resistant pneumococci | √ | √ | ||||||||||
MRSA | √ | √ | √ | √ | ||||||||
Neisseria gonorrhoeae/Gonoccoal infections | √ | √ | √ | √ | √ | √ | ||||||
Shiga-toxin producing or enter-haemorrhagic Escherichia Coli | √ | |||||||||||
Shigellosis | √ | |||||||||||
Campylobacter | √ | √ | √ | √ | √ | |||||||
Haemophilus influenzae | √ |
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Study Design and Analysis Approaches | Number of Studies |
---|---|
Observational: Retrospective analysis of routinely collected data | 30 |
Mixed methods: Retrospective analysis of routinely collected data combined with semi-structured interviews | 5 |
Observational: Retrospective analysis of routinely collected data combined with capture-recapture statistical methods | 5 |
Observational: Retrospective analysis of routinely collected data combined with a questionnaire survey | 2 |
Observational: Prospective analysis of routinely collected data | 1 |
Total | 43 |
Country of Study | Number of Studies |
---|---|
Afghanistan | 1 |
Australia | 4 |
Brazil | 3 |
France | 3 |
Germany | 1 |
Ireland | 1 |
Italy | 1 |
Japan | 1 |
Netherlands | 2 |
Republic of Korea | 1 |
Romania | 1 |
Saudi Arabia | 1 |
South Africa | 3 |
Spain | 2 |
Sweden | 3 |
Taiwan | 1 |
UK | 4 |
USA | 10 |
Total | 43 |
Attribute Name. | Description of Attribute as Used by Evaluators |
---|---|
Acceptability | Awareness of, and adherence to, the surveillance system protocol by staff. |
Completeness (also described as sensitivity, coverage, validity) | Either: The proportion of cases reported by the system (established by looking at other systems or by estimating using the capture-recapture method); also known as sensitivity or coverage. |
Or: Extent (or proportion) of the fields that are completed in the forms. In some studies, critical categories to be completed were identified; also known as validity. | |
Concordance (also known as reliability or consistency) | The level of agreement between the different systems on the data collected for each case. |
Flexibility | The degree to which a system can adapt to changing information needs or operating conditions with little additional time, personnel, or allocated funds (CDC Definition) [3]. |
Positive Predictive Value (also known as Predictive Value Positive) PPV | The proportion of reported cases that actually have the health-related event under surveillance (CDC Definition) [3]. |
Representativeness | Geographic or population coverage of system. |
Simplicity | Features that make a system easy to use (including the method of notification). |
Specificity | Correctly identifying patients who are free of the condition. |
Stability | Ability to collect, manage, and provide data properly without failure and ability to be operational when needed [3]. |
Timeliness | Period between different time points in the notification process. |
Usefulness | Ability of a system to provide information that can be (or is) acted on; also known as efficacy. |
Health Condition/Microorganism | Number of Included Evaluations |
---|---|
TB (Pulmonary or extra-pulmonary) | 22 |
Salmonella/salmonellosis | 8 |
Infections with penicillin-resistant pneumococci | 2 |
MRSA | 3 |
Neisseria gonorrhoeae/Gonococcal infections | 2 |
Shiga-toxin producing or enterhaemorrhagic Escherichia coli | 2 |
Shigellosis | 1 |
TB in HIV patients | 4 |
Campylobacter | 1 |
Haemophilus influenzae | 1 |
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Al-Haboubi, M.; Glover, R.E.; Eastmure, E.; Petticrew, M.; Black, N.; Mays, N. Quality and Utility of Information Captured by Surveillance Systems Relevant to Antimicrobial Resistance (AMR): A Systematic Review. Antibiotics 2021, 10, 431. https://doi.org/10.3390/antibiotics10040431
Al-Haboubi M, Glover RE, Eastmure E, Petticrew M, Black N, Mays N. Quality and Utility of Information Captured by Surveillance Systems Relevant to Antimicrobial Resistance (AMR): A Systematic Review. Antibiotics. 2021; 10(4):431. https://doi.org/10.3390/antibiotics10040431
Chicago/Turabian StyleAl-Haboubi, Mustafa, Rebecca E. Glover, Elizabeth Eastmure, Mark Petticrew, Nick Black, and Nicholas Mays. 2021. "Quality and Utility of Information Captured by Surveillance Systems Relevant to Antimicrobial Resistance (AMR): A Systematic Review" Antibiotics 10, no. 4: 431. https://doi.org/10.3390/antibiotics10040431
APA StyleAl-Haboubi, M., Glover, R. E., Eastmure, E., Petticrew, M., Black, N., & Mays, N. (2021). Quality and Utility of Information Captured by Surveillance Systems Relevant to Antimicrobial Resistance (AMR): A Systematic Review. Antibiotics, 10(4), 431. https://doi.org/10.3390/antibiotics10040431