1. Introduction
Necrotic enteritis (
NE) is a significant intestinal disease in poultry, manifesting in either acute clinical or chronic subclinical forms. The latter is prevalent in the global poultry industry, representing a substantial threat to broiler production and resulting in approximately
$6 billion in economic losses annually [
1].
NE is caused by pathogenic
Clostridium perfringens (
C. perf), a spore-forming, anaerobic, Gram-positive bacterium, which can also be a component of the normal microbiota in humans and animals [
2,
3]. The pathogenesis of
NE is primarily attributed to toxins produced by
C. perf, including α-toxin (CPA), β-toxin (CPB), ε-toxin (ETX), ι-toxin (ITX), enterotoxin (CPE), and NetB toxin (NetB) [
4]. The conserved
CPA gene encodes phospholipase C, sphingomyelinase, and a zinc-dependent metalloenzyme with hemolytic activity. This metalloenzyme is capable of hydrolyzing phospholipids within cell membranes, thereby inducing membrane dysfunction and subsequent cell death [
2]. Known for its hemolytic, skin necrotic, and lethal properties, CPA plays a pivotal role in gangrene [
5]. While PFO is leukotoxic at high doses, it stimulates the production of intracellular adhesion molecule 1 (ICAM-1) and adhesion glycoprotein CD11b/CD18 in endothelial cells at sublethal concentrations, resulting in leukocyte stasis in vessels adjacent to gangrene [
6,
7].
C. perf types A and C are the primary causative agents of
NE in poultry, with type A strains producing toxins such as CPA and PFO [
8]. Although
C. perf exhibits low pathogenicity in the intestinal tract of healthy poultry, environmental changes or feed-induced stress can trigger its overgrowth, leading to food poisoning,
NE, and other diseases [
9]. Antibiotics were once the mainstay of
NE treatment, but concerns over residues, contamination, and resistance have prompted their ban in many countries. Consequently,
NE cases surged, necessitating urgent development of antibiotic alternatives [
10]. Traditional Chinese medicine has emerged as a promising replacement due to its low toxicity, minimal residue, and reduced likelihood of inducing drug resistance [
11].
In recent years, clinical applications of
Polygonum hydropiper L. and its compounds have steadily increased, with studies demonstrating their efficacy against various bacterial and fungal diseases. Extracts of
Polygonum hydropiper L. exhibit protective effects against
Vibrio parahaemolyticus-infected
Litopenaeus vannamei, and the minimum inhibitory concentration (MIC) against
Aeromonas hydrophila, a pathogen affecting weather fish, is less than 10 μL/mL, indicating potent bacteriostatic activity [
12,
13].
Polygonum hydropiper compound extract (PHCE) is formulated based on traditional Chinese veterinary medicine principles, incorporating six herbs, including
Polygonum hydropiper L. and patchouli. As the core component,
Polygonum hydropiper L., with its heat-clearing and detoxifying properties, constitutes the largest proportion of PHCE and plays a primary role. The remaining herbs—
Patchouli,
Pulsatilla,
Astragalus,
Ligustrum lucidum, and
licorice—enhance the therapeutic efficacy of
Polygonum hydropiper L. while mitigating potential adverse effects [
14]. PHCE, a commonly used herb in Guangxi, contains abundant flavonoids and is employed in treating dysentery, gastroenteritis, diarrhea, and other gastrointestinal disorders. Plant-derived flavonoids possess diverse biological activities, including anti-inflammatory, antiviral, antioxidant, and antimicrobial properties [
15,
16,
17]. Liu et al. demonstrated that licorice chalcone A, extracted from licorice, reduced pro-inflammatory TNF-α levels in broiler chicken small intestinal tissues and effectively treated
C. perf-induced
NE with associated intestinal pathology [
18]. In addition, the traditional Chinese medicine compound composed of
Polygonum hydropiper L. also has great efficacy in treating animal diseases. Shen reported the efficacy of a compound
Polygonum hydropiper powder containing
Polygonum hydropiper L., cinnabar, and tea in preventing and treating contagious porcine gastroenteritis [
19].
Network pharmacology, a novel discipline rooted in systems biology, analyzes biological system networks to identify specific signaling nodes for targeted drug molecule design [
20]. Its aim is to systematically elucidate complex scientific challenges at multiple levels [
21]. A key characteristic of network pharmacology is its predictive nature, emphasizing multi-channel signaling pathway regulation to enhance therapeutic efficacy, reduce adverse effects, and improve clinical trial success rates, thereby lowering drug research and development costs [
22]. Molecular docking, a drug design method based on receptor characteristics and drug–receptor interactions, is a theoretical simulation technique for predicting binding patterns and affinities. It has become a crucial technology in computer-aided drug research [
23]. To optimize the development and utilization of PHCE, this study integrated network pharmacology and molecular docking to explore potential network targets and mechanisms of action in treating chicken
NE. PHCE and its constituents were extracted using decoction and alcohol extraction methods and subsequently applied to
C. perf type A. The in vitro bacteriostatic effects of PHCE on
C. perf type A were evaluated by determining the MIC, minimum bactericidal concentration (MBC), and bacteriostatic curves. To further elucidate PHCE’s protective effects and mechanisms against
NE in vivo, different PHCE doses were incorporated into broiler chicken diets. This experimental approach investigated PHCE’s protective effects and mechanisms in the jejunum and ileum, providing a theoretical foundation for PHCE application in preventing and controlling
C. perf-induced
NE in broilers.
3. Discussion
PHCE, formulated based on traditional Chinese veterinary principles, comprises six Chinese herbs including
Polygonum hydropiper L.,
Patchouli, Pulsatilla,
Astragalus,
Ligustrum lucidum, and
Licorice, with
Polygonum hydropiper L. serving as the primary therapeutic agent [
14]. Primarily affecting broiler chicks aged 2–6 weeks,
NE is induced by
C. perf and represents a significant bacterial intestinal disease in poultry [
25]. Analysis of the PHCE herb–compound–target network identified flavonoids, such as quercetin, kaempferol, and isorhamnetin, as primary active components. Activation of the NLRP3 inflammasome stimulates caspase-1, leading to the release of inflammatory cytokines IL-1β and IL-18 and subsequent cellular pyroptosis. However, NLRP3 inflammasome hyperactivation can induce pathological inflammation [
26]. Studies have demonstrated that flavonoids, including quercetin, kaempferol, and isorhamnetin, effectively inhibit NLRP3 inflammasome activation, ameliorating various inflammatory conditions by targeting the NLRP3 inflammasome and suppressing its mediated inflammatory responses [
27,
28,
29]. Interestingly, PPI network analysis, GO analysis, and KEGG pathway enrichment analysis identified NLRP3 and CASP1 as key PHCE targets against
NE, suggesting the NLRP3 inflammasome pathway as a potential mechanism of action. Molecular docking analysis revealed strong binding affinities between PHCE’s primary active components (quercetin, kaempferol, and isorhamnetin) and the target proteins NLRP3 and CASP1, indicating that PHCE may counteract
NE by inhibiting NLRP3 inflammasome activation.
Herbal medicines, with their antimicrobial, antioxidant, and anti-inflammatory properties, and their reduced propensity for bacterial resistance, are promising alternatives to antibiotics in preventing and treating bacterial diseases [
30]. PHCE, composed of
Polygonum hydropiper L.,
Patchouli, Pulsatilla,
Astragalus,
Ligustrum lucidum, and
Licorice, aligns with traditional Chinese veterinary medicine, with
Polygonum hydropiper L. serving as the primary therapeutic agent. Zhou et al. [
31] reported the potent bacteriostatic effects of
hydropiper L. decoction against
Salmonella dysentery,
Escherichia coli, and
Staphylococcus aureus (MICs of 15.62 g/L), as well as
Candida albicans and
Pseudomonas aeruginosa (MICs of 31.25 g/L). Zhu et al. [
32] employed a compound preparation containing
Polygonum hydropiper L.,
Sapium sebiferum leaves, and neem to treat red crucian carp fingerling disease, achieving a 100% worm kill rate within 24 h at a dose of 8 g/L. These studies collectively suggest that PHCE or compound formulations centered around
Polygonum hydropiper L. possess significant antibacterial potential and hold promise for preventing and treating animal diseases. The current study determined MIC and MBC values of 3.13 mg/mL and 12.5 mg/mL, respectively, against
C. perf type A, confirming PHCE’s potent antibacterial activity. However, given the potential discrepancies between in vitro and in vivo antimicrobial activities of traditional Chinese medicines or their compounds, further in vivo investigations are necessary to evaluate PHCE’s efficacy against
C. perf-induced
NE.
Network pharmacology analysis revealed that most PHCE active ingredients are flavonoids, possessing antioxidant properties through antioxidant enzyme activation and reduced oxygen-containing free radical levels. SOD, MDA, and H
2O
2 play crucial roles in maintaining redox balance in animals. SOD, an antioxidant enzyme, catalyzes the disproportionation of superoxide anions into H
2O
2 and molecular oxygen. H
2O
2, in the presence of iron chelates, reacts with oxygen to generate harmful hydroxyl radicals. MDA exhibits cytotoxicity, while the antioxidant enzyme CAT scavenges H
2O
2 [
33]. Flavonoids exert antioxidant effects by increasing antioxidant enzyme activity and chelating metal ions [
34]. Wang et al. [
35] demonstrated that
Angelica dahurica (polymethoxylated flavonoids) attenuated oxidative stress damage in astrocytes by reducing ROS and MDA production in a hypoxia-induced oxidative stress model. Tao et al. [
36] reported that a compound containing
Polygonum hydropiper L. and astragalus enhanced broiler chicken antioxidant capacity by increasing SOD enzyme activity when added to the basal diet. In this in vivo experiment, high-dose and ampicillin groups exhibited significantly or highly significantly increased SOD enzyme activity and decreased MDA and H
2O
2 levels in jejunal and ileal tissues compared to the model group, aligning with previous findings. While the ampicillin group demonstrated a stronger effect on increasing SOD enzyme activity and reducing MDA and H
2O
2 levels in broiler and ileal tissues compared to the medium- and low-dose groups, the high-dose group exhibited comparable efficacy. These results suggest that high-dose PHCE can alleviate oxidative stress damage induced by
C. perf NE by enhancing antioxidant capacity.
Oxidative stress and inflammation can contribute to intestinal injury in poultry, with a reciprocal relationship between the two processes. Inflammatory cells release substantial quantities of reactive substances at inflammation sites, exacerbating oxidative stress. Conversely, reactive oxygen and nitrogen species (ROS/RNS) can initiate intracellular signaling cascades and upregulate pro-inflammatory gene expression [
37,
38,
39,
40]. Flavonoids possess diverse biological activities, including antioxidant and anti-inflammatory properties.
Angelica dahurica attenuated hepatic injury in a mouse model of hepatic ischemia by enhancing antioxidant capacity and reducing TNF-α, IL-1β, and IL-6 mRNA expression [
41]. Similarly, compound formulations containing
Polygonum hydropiper L. have demonstrated comparable effects. Yang et al. [
42] reported that
Polygonum hydropiper L.-based Changyanning compound ameliorated ulcerative colitis in rats by increasing antioxidant enzyme activity and reducing MDA and TNF-α levels. In the current in vivo experiment, the high-dose and ampicillin groups exhibited the most pronounced effects, significantly or markedly reducing TNF-α, IL-1β, and IL-6 secretion and mRNA expression in the jejunum and ileum of broilers compared to the model group.
Inflammatory cytokines contribute to host defense against bacterial and other microbial invasions, but their overexpression disrupts biological homeostasis, triggering an inflammatory cascade that compromises intestinal integrity and barrier function [
43,
44]. Conversely, these cytokines protect the intestinal tract from pathogen-induced damage. Liu et al. [
18] demonstrated that licorice chalcone A reduced intestinal damage scores and preserved intestinal villus structure with minimal pathological changes in
C. perf-induced
NE in broiler chickens. In the present study, all treatment groups (low-dose, medium-dose, high-dose, medium-dose prophylaxis, high-dose control, and ampicillin control) reduced intestinal damage scores. However, only the high-dose, high-dose control, and ampicillin groups exhibited relatively intact intestinal villi structures in jejunal and ileal histological sections, with minimal necrotic detachment at intestinal villus apices in the high-dose group. Pathological damage in the jejunum and ileum of ampicillin-treated broilers was less severe than in the low-dose and medium-dose groups, resembling that of the control group. The high-dose and high-dose control groups displayed similar levels of jejunal and ileal pathological damage as the ampicillin group. The high-dose control group, lacking antibacterial treatment and receiving only high-dose PHCE, exhibited effects on antioxidant capacity, inflammatory cytokine secretion and expression, and intestinal damage similar to the control group, indicating the safety and non-toxicity of high-dose PHCE in broilers. Moreover, these findings suggest that high-dose PHCE effectively treats
C. perf-induced
NE.
Inflammation is a biological process safeguarding the body from pathogen invasion and cellular stress signals. The inflammatory response is triggered by inflammasome activation (intracellular protein complexes). Stress-induced danger signals encompass various molecules, including cellular debris (e.g., DNA fragments, ATP), pathogen-associated molecular patterns (e.g., bacterial LPS, viral dsRNA), and cytokines/chemokines released by damaged or stressed cells [
45]. These molecules are recognized by the immune system and cellular receptors, activating inflammasomes and initiating the inflammatory response. PAMPs and DAMPs stimulate NLRP3 inflammasome activation, which subsequently activates caspase-1. Caspase-1 cleaves pro-IL-1β and pro-IL-18 into active IL-1β and IL-18, releasing them extracellularly. Additionally, caspase-1 cleaves GSDMD, a member of the gasdermin family, resulting in cell perforation and pyroptosis. However, excessive inflammasome activation can induce pathological inflammation [
26]. Studies have demonstrated the anti-inflammatory effects of flavonoids through inflammasome inhibition. For instance, Tsai et al. [
46] observed that the flavonoid gallocatechin gallate (EGCG) attenuated lupus nephritis in mice by inhibiting caspase-1 activation through decreased NLRP3 mRNA expression, reducing IL-1β and IL-18 production. Jiang et al. [
47] investigated the effects of quercetin on mice with sodium urate crystal-induced gouty arthritis, finding that quercetin ameliorated symptoms by inhibiting NLRP3, caspase-1, and IL-1β mRNA expression in knee joints. ROS, as upstream regulators of NLRP3 inflammasome activation, are inhibited by flavonoids, which also reduce MDA production [
48]. For example, lidocaine suppresses ROS production, inhibiting NLRP3 inflammasome activation and preventing THP-1 cell pyroptosis [
49]. Apigenin and fusaricin decrease MDA levels in Adriamycin-induced renal injury and glyoxylate-induced renal tissue injury, respectively [
50,
51]. H
2O
2 and ∙OH, both ROS, contribute to MDA formation through lipid oxidation [
52]. Compared to the model group, the high-dose PHCE group exhibited significantly or highly significantly lower H
2O
2 and MDA levels in jejunal and ileal tissues, suggesting reduced ROS production. Concurrently, NLRP3, caspase-1, IL-1β, and GSDMD mRNA expression was significantly or highly significantly elevated in jejunal and ileal tissues of high-dose, high-dose control, and ampicillin groups, but not in low-dose, medium-dose, or medium-dose prophylaxis groups. The high-dose control group (no antibacterial treatment) and ampicillin group (antibiotic effective against
C. perf) served as controls. These findings suggest that high-dose PHCE protects against
C. perf-induced NE by inhibiting NLRP3 inflammasome activation through reduced ROS production, subsequently attenuating intestinal damage.
4. Materials and Methods
4.1. Bacterial Strains and Drugs
C. perf type A (ATCC13124) was purchased from the American type culture collection (ATCC, Rockville, MD, USA), and anaerobically cultured in Brain heart infusion (BHI) broth (Qingdao Hopebio Co., Qingdao, China) or on Tryptose sulfite–cyloserine (TSC) agar base (Qingdao Hopebio Co. Qingdao, China) at 37 °C. The raw materials for the test drug, such as Polygonum hydropiper L., Patchouli, Pulsatilla, Astragalus, Ligustrum lucidum, and Licorice, were purchased from Gaoxiong Chinese Medicine (Kaohsiung, China).
4.2. Screening the Active Ingredients and Targets of PHCE
The compounds and the corresponding targets of
Polygonum hydropiper L.,
Patchouli,
Pulsatilla,
Astragalus,
Ligustrum lucidum, and
Licorice in PHCE were obtained from the databases TCMSP (
https://old.tcmsp-e.com/tcmsp.php, accessed on 15 June 2024) and CNN (
https://www.cnki.net/, accessed on 15 June 2024). We retrieved all components of the PHCE compounds from TCMSP and CNN, which had oral bioavailability (OB) ≥ 30% and drug-likeness (DL) ≥ 0.18 as screening conditions to retrieve the active components and targets of action of PHCE [
53,
54].
4.3. NE Target Acquisition
To identify potential therapeutic targets for
NE, the GeneCards database (
https://www.genecards.org/, accessed on 16 June 2024) and PharmGKB database (
https://www.pharmgkb.org/, accessed on 16 June 2024) were queried using the keyword “Necrotic Enteritis”. Extracted disease targets from both databases were then merged and subjected to de-weighting to account for potential redundancies. Subsequently, the de-weighted list of potential targets was imported into the UniPort database (
https://www.uniprot.org/, accessed on 16 June 2024) for name standardization to ensure a consistent nomenclature for NE targets.
4.4. Construction of Active Compound–Target Networks
Cytoscape is a network biology visualization and analysis software that enables the visualization of molecular interactions and biological processes [
55]. The PHCE chemical composition and target files were imported into Cytoscape 3.9.1 to construct a compound–target network. In this network, each compound or target is represented by a node, and the relationships between them are depicted as connecting lines.
4.5. Construction of PPI Network
To identify potential PHCE targets for treating
NE, the active ingredients of PHCE and known
NE targets were imported into a bioinformatics platform (
https://www.bioinformatics.com.cn/, accessed on 19 June 2024) to generate a Venn diagram. Overlapping genes within the diagram were considered potential targets for PHCE action against
NE. These intersecting genes were subsequently uploaded to the STRING database (
https://cn.string-db.org/, accessed on 20 June 2024) with a high confidence interaction score threshold of 0.9 [
56]. Irrelevant nodes were hidden, and default settings were maintained for other parameters. The resulting interaction network data were exported in “.tsv” format and imported into Cytoscape 3.9.1 software. Network node properties, including Degree, Betweenness Centrality, and Closeness Centrality, were calculated within Cytoscape [
57]. Nodes exceeding the median values for these properties were identified as key targets and used to construct the final PPI network.
4.6. Functional Enrichment Analysis
Genes identified at the intersection of PHCE’s mechanism of action and
NE were imported into the DAVID database (
https://david.ncifcrf.gov/summary.jsp, accessed on 21 June 2024) for GO analysis with background enrichment against the KEGG pathway database [
58]. The top 10 significantly enriched (
p-value < 0.01) GO terms in each category (biological process, cellular component, and molecular function) were selected, along with the top 30 pathways ranked by gene enrichment [
59]. Subsequently, GO and KEGG data were uploaded to the microbiometrics platform for visual analysis.
4.7. Molecular Docking Studies
Leveraging network pharmacology, the top three key components of PHCE effective against
NE were identified and subjected to molecular docking simulations with the two most promising target proteins from the PPI network. Here, the key components act as ligands, and the target proteins function as receptors. The 3D structures of the target proteins were downloaded in PDB format from the RCSB PDB database (
http://www.rcsb.org/, accessed on 22 June 2024) while ligand structures were retrieved in SDF format from the TCMSP and PubChem databases (
https://pubchem.ncbi.nlm.nih.gov/, accessed on 23 June 2024). Open Babel 2.4.1 was used to convert ligand SDF files into MOL2 format, which is suitable for docking simulations. Finally, PyMoL 5.2.7 and AutoDock Vina [
60] were employed to perform the docking simulations between the key PHCE ingredients and core target proteins. The minimum binding efficiency served as the metric for assessing ligand–receptor binding activity.
4.8. Preparation of PHCE
PHCE was prepared using a hydrodecoction–alcohol method. A 20 g mixture of six herbs (Polygonum hydropiper L., Patchouli, Pulsatilla, Astragalus, Ligustrum lucidum, and Licorice), sieved through a 100-mesh sieve, was decocted three times in ten volumes of distilled water at 100 °C for 1.5 h each. The combined filtrates (passed through 8-layer gauze) were centrifuged at 3000 rpm for 30 min, and the supernatant was concentrated using a rotary evaporator at 60 °C. Subsequently, 95% ethanol was added to achieve an 80% ethanol concentration, and the solution was left to stand for 24 h. After filtration through eight layers of gauze and centrifuging at 3000 rpm for 30 min, the ethanol was recovered using a rotary evaporator, and the solid obtained (20 g) was suspended in the corresponding medium to have 20 mL of solution (conc. 1 g/mL). The prepared PHCE was stored at 4 °C for subsequent use.
4.9. Determination of MIC and MBC
PHCE, Polygonum hydropiper L., patchouli, pulsatilla, astragalus, Ligustrum lucidum, and licorice medicinal liquids were autoclaved at 100 °C for 30 min for sterilization. Subsequently, 4 mL of each drug solution was pipetted into 1 mL of BHI medium, yielding an 800 mg/mL concentration. Serial two-fold dilutions were performed using BHI liquid medium to prepare 10 drug concentrations ranging from 0.78 mg/mL to 400 mg/mL. The C. perf bacterial solution in the logarithmic growth phase was diluted to about 2 × 106 CFU/mL in BHI medium. A sterile 96-well plate was then used to introduce 100 μL of the bacterial solution to each well, followed by the addition of 100 μL of the prepared drug solutions at varying concentrations, resulting in final drug concentrations ranging from 0.39 mg/mL to 200 mg/mL and a final bacterial concentration of 1 × 106 CFU/mL. Positive (100 μL BHI medium + 100 μL bacterial solution) and negative (200 μL BHI medium) controls were established in triplicate. In 96-well plates, each experimental group was repeated four times, and three 96-well plates were used for 12 replicates. All 96-well plates were incubated for 12–18 h at 37 °C in a 2.5 L round-bottomed vertical anaerobic culture bag (Qingdao Hopebio Co.) containing a 2.5 L anaerobic gas-generating bag and oxygen indicator. Following incubation, the cultures were mixed, and the OD600 nm value was measured using an enzyme-labeling instrument. An absorbance change of less than 0.05 indicated effective bacterial growth inhibition, defining the MIC. An absorbance change of less than 0.05 at OD600 nm was considered the absence of bacterial growth, allowing for the determination of the MIC of PHCE, Polygonum hydropiper L., patchouli, pulsatilla, astragalus, Ligustrum lucidum, and licorice medicinal liquids against C. perf based on the measured absorbance values.
To determine the MBC of PHCE against C. perf, five PHCE drug concentrations (0.78 mg/mL, 1.56 mg/mL, 3.13 mg/mL, 6.25 mg/mL, and 12.5 mg/mL) were prepared. One hundred microliters of bacterial suspension were evenly inoculated onto a sterile TSC solid medium and placed within a 2.5 L round-bottom vertical anaerobic culture bag. A 2.5 L anaerobic gas production package and oxygen indicator were added before incubation at 37 °C overnight. The PHCE concentration resulting in fewer than five colonies on the medium was defined as the MBC against C. perf.
4.10. Determination of Antimicrobial Activity
C. perf liquid was diluted to 1 × 106 CFU/mL in BHI medium and distributed into tubes. PHCE was introduced at final concentrations of 0 mg/mL, 0.78 mg/mL, 1.56 mg/mL, 3.13 mg/mL, 6.25 mg/mL, and 12.5 mg/mL, respectively. Tubes were incubated statically at 37 °C, and 100 μL bacterial aliquots were collected at 0, 1, 2, 3, 4, 6, 8, 10, and 12 h for bacterial count determination via plaque assay, with triplicate samples at each time point. Time–kill curves were generated, plotting time (hours) on the horizontal axis and colony number (log) on the vertical axis.
4.11. Animals and Treatment
Two hundred one-day-old healthy yellow-feathered broilers were purchased from Guangxi Shengde Poultry; the cages and equipment used in the test were thoroughly disinfected, and the coops were fumigated. Broilers were routinely vaccinated, fed, and watered ad libitum, and the coops were cleaned and disinfected regularly. Environmental temperature control was as follows: 32–34 °C in the first week, the temperature was reduced by 2–3 °C every week, and the humidity of the chicken house was controlled at 50–60%. The basal feed (BF) was the same corn–soybean meal type, formulated with reference to the Chicken Feeding Standard (2004), and its composition and nutrient content are shown in
Table 6 [
61]. The present experiment was carried out at the hatchery facility of the Laboratory of Histoembryology, College of Animal Science and Technology of Guangxi University, and the broiler rearing facility of Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, Nan-Ning City, China. All animal procedures were approved by the Animal Care and Welfare Committee of Guangxi University, China (Protocol GXU-2020-008).
Two hundred one-day-old healthy broilers were randomly assigned to eight groups: control, model, medium-dose prophylaxis, low-, medium-, and high-dose ampicillin, and high-dose drug control. Each treatment group contained five replicates of five broilers. Broilers received a basal diet throughout the experiment (
Table 7). On day 17, chicks were slaughtered via CO
2 asphyxiation. Under aseptic conditions, the abdominal cavity was opened to observe and score jejunal and ileal pathological changes. One-centimeter segments from the mid-sections of the jejunum and ileum were collected, fixed in precooled 4% paraformaldehyde, washed with sterilized phosphate-buffered saline (PBS) to remove intestinal contents, and stored at −80 °C in liquid nitrogen for rapid freezing.
4.12. Determination of Oxidation and Antioxidant Indexes
Jejunal and ileal tissues were retrieved from −80 °C storage and minced into small pieces using autoclaved scissors. Approximately 0.1 g of tissue from each group was weighed and homogenized in 0.9 mL PBS containing sterile grinding beads using a high-speed tissue grinder. The homogenate was centrifuged at 5000× g for 10 min, and the supernatant was carefully transferred to a new centrifuge tube for subsequent analysis. SOD activity and H2O2 and MDA levels were quantified according to kit instructions. The H2O2 (20220509), MDA (20220428), and SOD (20220507) kits were procured from Nanjing Jiancheng Bioengineering Institute (Nanjing, China).
4.13. Determination of TNF-α, IL-1β and IL-6
TNF-α, IL-1β, and IL-6 levels were quantified in jejunal and ileal tissue homogenate supernatants using ELISA kits (TNF-α [MM-093801], IL-1β [MM-3691001], and IL-6 [MM-052101]) procured from Jiangsu Enzyme Immunity Industry Co., Ltd. (Taizhou, China), following the manufacturer’s protocol.
4.14. Scoring of Jejunal and Ileal Lesions
Ocular pathologic changes were observed within a 5 cm segment of the jejunum and the anterior ileum. Intestinal injury was scored using a 0–6 point scale adapted from Shojadoost et al. [
62]: 0 (no apparent injury), 1 (intestinal wall thinning and brittleness), 2 (1–5 necrotic foci), 3 (6–15 necrotic foci), 4 (16 or more necrotic foci), 5 (a 2–3 cm necrotic sheet), and 6 (a large, diffuse necrotic area).
4.15. Observation of Histopathologic Changes in the Jejunum and Ileum
Jejunal and ileal tissues were fixed in 4% paraformaldehyde for 24 h, followed by dehydration, clearing, wax embedding, sectioning, and hematoxylin–eosin (HE) staining to produce histopathological sections. Microscopic examination under low magnification assessed the morphology and structure of jejunum and ileum tissues, while high-magnification examination focused on intestinal villi morphology and structure.
4.16. RNA Extraction and Gene Expression Analysis
Approximately 50–100 mg of jejunum and ileum tissues, stored at −80 °C, were transferred to sterile, enzyme-free microcentrifuge tubes. Sterile, enzyme-free grinding beads were added, followed by 1 mL of RNA isolator reagent. The samples were homogenized using a high-speed tissue grinder, subsequently centrifuged at 12,000× g for 5 min at 4 °C, and the supernatant was transferred to a sterile, enzyme-free microcentrifuge tube. Total RNA from intestinal tissues was extracted using the RNA isolator Total RNA Extraction Reagent kit following sample processing.
RNA purity was assessed by spectrophotometric determination of OD260/280 values, while integrity was verified using 1% agarose gel electrophoresis. Reverse transcription employed the All-In-One 5× RT MasterMix kit (Nanjing Ai Bi MnegBiological Material Co., Ltd., Nanjing, China), generating cDNA from 1 μL RNA template, 4 μL MasterMix, and 15 μL ddH
2O through incubation at 37 °C for 15 min, 60 °C for 10 min, and 95 °C for 3 min. cDNA was stored at −20 °C. RT-qPCR primers targeting GADPH, caspase-1, IL-1β, NLRP3, IL-6, GSDMD, and TNF-α genes were designed using Primer Express 6.0 software based on GenBank sequences and synthesized by Shanghai Sangon Biotech Co., Shanghai, China (
Table 8). Real-time PCR reactions were conducted using BlasTaq™ 2× qPCR MasterMix (Nanjing Ai Bi MnegBiological Material Co., Ltd.), comprising 10 μL MasterMix, 0.5 μL of each primer (10 μM), 1 μL cDNA, and 8 μL ddH
2O. A Light Cycler 96 real-time fluorescence quantitative PCR instrument (Roche, Basel, Switzerland) was used with the following cycling conditions: initial denaturation at 95 °C for 3 min, followed by 40 cycles of denaturation at 95 °C for 15 s and annealing/extension at 60 °C for 60 s.
4.17. Statistics Analysis
SPSS 23 software was used for statistical analysis. One-way analysis of variance (ANOVA) was used to test the main effect. When the differences were significant (p < 0.05), the group means were further compared using Tukey’s test. Data were presented as mean ± standard deviation, with significance levels set at p < 0.05 and high significance at p < 0.01. The analysis for lesion score was performed using the nonparametric Kruskal–Wallis test. Graphical representations were generated using GraphPad Prism 9.