1. Introduction
Gramicidin A (gA) is a predominantly hydrophobic pentadecapeptide that forms a
β6.3-helix when inserted into a lipid bilayer [
1,
2,
3,
4]. The transmembrane dimer, formed by two gA monomers located in opposite membrane monolayers, is a cation-selective ion channel [
1,
5]. The dimer is stabilized by six hydrogen bonds formed between valines located near the N-termini of the monomers [
6]. The ion channel is characterized by the average lifetime of the conducting state (dimer) and the average number of dimers per unit membrane area at a given gA concentration [
5,
7,
8]. The average number of dimers is directly related to the integral ion conductance of the membrane. The length of the transmembrane gA dimer is usually less than the thickness of a “typical” lipid bilayer (e.g., composed of dioleoylphosphatidylcholine, DOPC, or diphytanoylphosphatidylcholine, DPhPC). Therefore, it is believed that the dimer formation is accompanied by membrane deformations: dimer formation requires the compression of the adjacent part of the lipid bilayer [
9,
10]. Since the length of the gA monomer is less than the thickness of a “typical” lipid monolayer, the membrane is also deformed near the gA monomer [
11,
12,
13]. Both the formation of gA dimer and its dissociation into two monomers occur via the same intermediate state of a coaxial pair, in which two gA monomers are located in opposite monolayers one on top of the other [
11,
12,
13]. It is assumed that the state of the gA coaxial pair corresponds to the top of the energy barrier of the dimerization/dissociation reaction (
Figure 1). The energy of membrane deformations contributes to the energy of all three gA states [
11,
12,
13]. It has been experimentally shown that the channel characteristics do depend on the elastic parameters of the lipid membrane: thickness [
14], spontaneous curvature of monolayers [
10,
15,
16], and lateral tension [
17,
18].
Starting from the pioneering work by Huang [
19], a large number of theoretical models have been developed, linking the elastic contribution to the energy of a particular gA state with the elastic parameters of the lipid bilayer [
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21]. The dependences of channel lifetime on spontaneous curvature [
10,
11,
15,
16,
20,
21], lateral tension [
17,
18,
21], and membrane thickness [
11,
14,
17,
21] have been predicted and tested experimentally. However, both theoretical and experimental studies of gA have been carried out in symmetric bilayer systems, i.e., in which the physical properties of the monolayers are identical. Meanwhile, real biological membranes are usually significantly asymmetric in the lipid composition of monolayers. In particular, in most Gram-negative bacteria, the inner monolayer of the plasma membrane is enriched by phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and cardiolipin, while the outer monolayer is enriched by lipopolysaccharides or glycosphingolipids [
22]. In the plasma membranes of mammalian cells, the inner monolayer is enriched by PE, phosphatidylserine (PS), and phosphatidylinositol (PI) with predominantly unsaturated acyl chains, while the outer monolayer is enriched by phosphatidylcholine (PC), sphingomyelin (SM), and gangliosides with more saturated acyl chains [
23,
24,
25,
26].
The membrane asymmetry in lipid composition leads to differences in the physicochemical characteristics of the constituent lipid monolayers, primarily in their elastic parameters. Spontaneous curvature is one of the most sensitive elastic parameters to the type of polar lipid head and the length and unsaturation of acyl chains [
27,
28]. Generally, the spontaneous curvature of PE, PI, PG, and cholesterol is strongly negative, while that of PS, SM, PC, and gangliosides is about zero (slightly negative or positive) [
27,
28,
29]. In addition to the spontaneous curvature, monolayers can have other different physical characteristics, such as bending moduli and lateral stretching moduli. If the lipid exchange between monolayers of a closed membrane, for example, a giant unilamellar vesicle (GUV), is slow enough, then different lateral tensions can arise in monolayers, up to complete asymmetry, i.e., when lateral tension arises in one monolayer, and lateral pressure approximately equal to it in absolute value arises in the opposite monolayer [
30].
The generalization of theoretical models to the case of asymmetric membranes suggests the practical use of gA in biological systems. Gramicidin A has high bactericidal properties, but at working concentrations, it destroys erythrocytes. However, this peptide has good potential for modification. Charged analogs of gA [
31,
32] or gA with a reduced dimerization constant due to the replacement of N-terminal valines with other amino acids [
12] can nevertheless be used in vivo for various purposes. In previous work [
33,
34], it was shown that [Glu1]gA, i.e., gA with an N-terminal valine replaced by Glu, can penetrate several lipid membranes in a model system and relieve the electrical potential on the internal membranes of mitochondria in cells. It has been shown in vivo that [Glu1]gA can alleviate the consequences of brain stroke in rats due to the fact that when the membrane potential is relieved, active oxygen species that damage neurons are not produced in mitochondria [
33]. Such an application implies the possibility of gA transfer from one membrane monolayer to another, for example, from the outer monolayer of the plasma membrane to its inner monolayer. Obviously, the asymmetry of the lipid composition of the membrane monolayers should affect the flip–flop rate.
In this work, we studied how the asymmetry of the physical characteristics of monolayers affects the average lifetime of a solitary gA dimer and the monomer–dimer equilibrium constant. We focused on the relatively simple case of homogeneous monolayers, i.e., consisting of a single lipid component. The influence of heterogeneity and/or the presence of impurities on the average lifetime and equilibrium constant of gramicidin is described in detail in [
35,
36].
2. Methods
The average lifetime of gA dimer and the equilibrium constant of gA dimers and monomers are determined by the energies of three configurations of gA [
11,
12,
13]: two isolated monomers located in different monolayers; a conducting dimer, which is a metastable configuration of two monomers; and a coaxial pair consisting of two gA monomers located one on top of the other in opposing monolayers (
Figure 1). In all of these configurations, gA deforms the lipid membrane and deforms it differently. This results in energy barriers both to dimer formation and to its dissociation. The values of these barriers determine the average lifetime of the conducting state and the average number of dimers in the membrane.
In order to form the dimer, two gA monomers located in opposing monolayers must meet during their diffuse movement along the membrane surface, and form the coaxial pair by overcoming the energy barrier Δ
Wform =
Wpair − (
Wmon in +
Wmon out), where
Wpair is the membrane deformation energy in the coaxial pair state and
Wmon in and
Wmon out are the membrane deformation energies induced by single monomer in the inner and outer monolayers, respectively. Having reached the coaxial pair state, the top of the potential barrier, gA monomers can form the conducting dimer or escape back to isolated monomers. Thus, the rate constant
Kdim of the dimerization reaction can be written as:
where
Kdim0 is the pre-factor depending mostly on the diffusion rate and on the membrane-mediated lateral interaction of gA species in the case of large concentrations [
12,
35];
kB is the Boltzmann constant;
T is the absolute temperature. In the following, we consider the case of low concentrations of gA, when the lateral interaction between gA particles can be neglected and the value of
Kdim0 can be considered constant.
When a dimer dissociates into two monomers, it transforms into a coaxial pair. Thus, the average lifetime
τ of the dimer can be written as:
where
ν is the characteristic frequency of attempts of dimer dissociation;
W′
dim is the energy in the dimer state taking into account the energy of stabilizing hydrogen bonds. Since the value of 1/
τ is the rate constant of decay of the conducting state, then for the equilibrium constant of the dimerization/dissociation reaction
K, we have:
where
Cd,
Cmon in, and
Cmon out are surface concentrations of dimers, monomers in the inner monolayer, and monomers in the outer monolayer, respectively;
K′ is some constant pre-factor and
Wdim is the energy in the dimer state without accounting for the contribution of hydrogen bonds. From expressions (2) and (3), it follows that in order to calculate the relative change in the average lifetime of the dimer or the equilibrium constant in the asymmetric membrane, it is necessary to calculate how the energies of the above-described gA configurations change (
Figure 1). In this case, all contributions to the energy due to chemical interactions, for example, the energy of hydrogen bonds of the dimer, will not contribute to the final expressions for the relative changes of the average lifetime and equilibrium constant.
To calculate the energies of gA configurations for arbitrary elastic parameters of lipid monolayers, we used the functional elastic deformation energy of the membrane developed by Hamm-Kozlov [
37] and further generalized in [
11,
12,
13]. In this approach, deformations of the lipid monolayer are characterized by the shape of its neutral surface
H, the field of unit vectors
n, called directors, which correspond to the average direction of the longitudinal axes of anisotropic lipid molecules, and the shape of the monolayer interface
M. The deformation energy of the bilayer is the sum of the deformation energies of two monolayers. We consider the outer monolayer as the upper one, and denote the variables related to it by the index “
u” and the inner monolayer as the lower one (index “
l”). The deformations are considered small, and the energy is calculated in the second order with respect to them. The bulk modulus of lipid membranes is very high, about ~10
10 J/m
3 [
38]. For this reason, the hydrophobic part of lipid monolayers can be considered volumetrically incompressible. Within the required accuracy, the condition of the local volumetric incompressibility can be written as [
11,
12,
13,
37]:
where
α is the relative stretching;
h is the thickness of the hydrophobic part of the lipid monolayer. The energy of elastic deformation can be written as [
11,
12,
13]:
where
B is the splay modulus;
J0 is the spontaneous curvature of lipid monolayer;
Kt is the tilt modulus;
σ is the lateral tension;
Ka is the modulus of lateral stretching;
KG is the Gaussian modulus; and
Ku,l is the Gaussian splay. The integration is performed over the surfaces of upper and lower monolayers. The deformation of relative stretching was substituted from the condition of local volumetric incompressibility, as seen in Equation (4). The deformations in (5) are assumed to be small, so
nu = (
nux,
nuy, −1),
nl = (
nlx,
nly, +1), where
nx and
ny are corresponding projections of the director in a Cartesian coordinate system, of which the
xy plane coincides with the plane of the unperturbed membrane. We further focus on how the energy of gA configurations change if there are asymmetric tension
σu ≠
σl and/or spontaneous curvature
J0u ≠
J0l; all other parameters are assumed to coincide in the upper and lower monolayers.
The minimization of the energy functional (5) requires appropriate boundary conditions. There are no deformations far from gA, so we can write:
Each configuration of gA imposes its own boundary conditions, which were described in detail in previous works [
11,
12,
13]. Here, we describe them briefly. First of all, all three gA configurations are cylindrically symmetrical. The boundary of gA at the neutral surface of the corresponding monolayer is assumed to be a circle Γ of radius
r0. The gA monomer imposes boundary conditions only on director projections onto the plane of the unperturbed membrane:
where
nn and
nt are normal and tangential to Γ projections of the director
n, and
hp is the length of the hydrophobic part of the gA monomer. The gA monomer imposes boundary conditions (7) only on the director of the monolayer where the gA monomer is located. The gA pair imposes two boundary conditions similar to (7) for directors in both monolayers. The gA dimer sets the membrane thickness at the contour Γ:
To find the minimum of functional (5) under boundary conditions (6)–(8), we derive the Euler–Lagrange equations in the cylindrical coordinate system
Orz. We do not present them here because they are too bulky; they were obtained explicitly in previous work [
11]. Euler–Lagrange equations are linear, and they were solved analytically. For the difference in director projections in the upper and lower monolayers
d(
r) =
nu(
r) −
nl(
r), the general solution of Euler–Lagrange equations has the form:
where
c0,
c1, …,
c7 are constant complex coefficients that should be determined from the boundary conditions;
J1 and
Y1 are the corresponding Bessel functions of the first order;
p1,
p2, and
p3 are inverse characteristic lengths of deformations determined by the elastic parameters only. To determine a part of coefficients
c0,
c1, …,
c7 we used the boundary conditions from Equations (6)–(8). The remaining coefficients were determined by the direct minimization of (5) after the substitution of the general solution for deformations in a form similar to (9).
We calculated the energies of gA configurations for different values of spontaneous curvature and lateral tension in the upper and lower monolayers. Of note, the energy contribution from the spontaneous curvature can be explicitly integrated from the functional Equation (5). For the gA monomer located in the inner (outer) monolayer, the corresponding term yields:
where
is a constant term independent of the spontaneous curvature. From Equation (10), it follows that the energy of deformations induced by the gA monomer depends linearly on the spontaneous curvature of the monolayer where the monomer resides.
To obtain quantitative results, we used the following values of the elastic parameters (per monolayer): splay modulus
B = 10
kBT (
kBT ≈ 4 × 10
−21 J) [
39]; tilt modulus
Kt = 40 mN/m [
37,
40]; lateral stretching modulus
Ka = 133 mN/m [
39]; Gaussian splay modulus
KG = −0.3
B [
41]; thickness of the hydrophobic part of the monolayer
h = 1.45 nm [
11,
12,
13]; the diameter of gA monomer 2
r0 = 2 nm; the length of gA dimer 2
hp = 1.5 nm [
11,
12,
13]. We considered the following values of spontaneous curvatures of the upper and lower monolayers:
J0 = −0.3, −0.2, −0.1, 0 nm
−1. The lateral tension and pressure in the monolayers were varied from −3 mN/m to +3 mN/m with the imposed condition of positive total lateral tension of the membrane, i.e.,
σu +
σl > 0, that is, the condition of membrane mechanical stability.
3. Results
Using Equations (2) and (3), we calculated the gA dimer average lifetime and monomer–dimer equilibrium constant. To compare the results obtained for different sets of the elastic parameters, we assumed that the frequency
ν and constant
are the same for different lipids or their dependences on spontaneous curvature are weak and we can neglect them in comparison with exponential dependences in Equations (2) and (3). As the reference point, we used the limit (
σu,
σl) → (0, 0): the corresponding limits of lifetime
τ and equilibrium constant
K are denoted as
τ0 and
K0. It should be noted that the elastic energy functional Equation (5) is stable only when
σu +
σl > 0, and values
σu =
σl = 0 do not correspond to any stable membrane. However, if (
σu +
σl) is positive, the energies of all states of gA can be determined and the limit (
σu,
σl) → (0, 0) exists and corresponds to the membrane with infinitely small tension, for example, a deflated vesicle. To compare the lifetime
τ0 and equilibrium constant
K0, we introduce the reference values
τ00 =
τ0(
Ju = 0,
Jl = 0) and
K00 =
K0(
Ju = 0,
Jl = 0). Earlier, we showed that the dependences of the gA pair energy
Wpair and the sum of energies of two isolated monomers in different monomers (
Wmon in +
Wmon out) on spontaneous curvature are the same: they are linear with a coinciding slope coefficient [
11]. For this reason, the dependences of
τ0 and
K0 on spontaneous curvature should coincide as well, and they can be plotted on the same graph (
Figure 2).
From
Figure 2, it is clear that the gA dimer lifetime
τ0 and equilibrium constant
K0 are highly sensitive to the spontaneous curvature of lipid monolayers. This result complements and generalizes the result of the previous work [
11], where only the membranes composed of symmetrical monolayers were considered.
To investigate how the lateral tension influences the characteristics of the gA system, we calculated the gA dimer lifetime
τ (
Figure 3) and equilibrium constant
K (
Figure 4) at different lateral tensions of membrane monolayers. From
Figure 3 and
Figure 4, one can see that the lateral tension also regulates the gA lifetime and equilibrium. We should note that the asymmetric lateral tension can either increase or decrease
τ and
K, and the effect depends strongly on the spontaneous curvatures of the monolayers.
As the reference points, one can use the values of
τ determined in [
42] on model bilayer lipid membranes with lateral tension of about
σu =
σl = 0.5 mN/m:
τ = 3.6 ± 1.1 s for the DOPC membrane (
Ju =
Jl = −0.091 nm
−1 [
28]), and
τ = 4.5 ± 1.5 s for the DPhPC membrane (
Ju =
Jl = −0.097 nm
−1 [
42]). In [
42], membranes were formed by the Montal–Muller technique without decane used as a solvent. For this reason, the presented values of
τ differ from those determined on Muller–Rudin decane- or hexadecane-containing model membranes [
14,
15,
18].
4. Discussion
Here, we developed a theoretical model for the calculation of the energy of elastic deformations induced by gA monomers, coaxial pairs, and dimers in lipid membranes that are asymmetric with respect to the lipid composition (spontaneous curvature) and lateral tension of lipid monolayers. The important characteristics of gA channels—the average lifetime and monomer–dimer equilibrium constant—depend exponentially on the calculated energies (Equations (2) and (3)). The asymmetry with respect to the composition of lipid monolayers is typical for biological membranes, particularly the plasma membranes of mammalian cells [
24,
25,
26].
In typical mammalian plasma membranes, the outer monolayer is generally composed of more saturated lipids than the inner monolayer [
24,
25,
26]. In addition, phosphatidylethanolamines with small polar heads are preferentially located in the inner monolayer. Overall, this means that the spontaneous curvature of the inner monolayer should be more negative than that of the outer monolayer. Since the length of the gA monomer is smaller than the thickness of the hydrophobic part of a typical lipid monolayer, its effective molecular shape when inserted into the monolayer is an inverted cone with its base directed toward the aqueous phase. This is formally reflected in the boundary condition in Equation (7): the gA monomer imposes a negative radial projection of the boundary director. The energy of deformations induced by the gA monomer is thus reduced in a lipid monolayer with negative spontaneous curvature and increased in a monolayer with positive spontaneous curvature. For the plasma membrane, this means that it is energetically more favorable for gA monomers to be seated in the inner monolayer since its spontaneous curvature is more negative than that of the outer monolayer. If gA or its derivatives are added from the outside of the cell, the asymmetry of the plasma membrane in the spontaneous curvature of its constituent monolayers should thus lead to the accumulation of gA monomers in the inner monolayer. This formally follows from Equation (10).
The predictions of the developed theoretical model can be quantitatively tested in compositionally asymmetric model membranes. Recently, methods of preparation of compositionally asymmetric large unilamellar vesicles (LUVs) have been developed (see, for example, [
43]). The asymmetry is achieved with the use of the lipid-exchanging substance methyl-
β-cyclodextrin (M
βCD). M
βCD cannot penetrate the membrane and thus modifies the lipid composition of the outer monolayer only. It is quite tricky to study the ion conductance of gA on LUVs. Asymmetric planar lipid bilayers formed by the Montal–Mueller technique [
44] or its modification [
42,
45] are better suited to electrophysiological measurements. The model predictions of the average lifetime and number of dimers of gA can be tested in such model systems.
The asymmetry of the lipid membrane with respect to the lateral tension in its monolayers may arise when an amphiphilic substance (for example, gA) is added to either the outer or inner space of the closed membrane like GUVs. In this case, the incorporation of an amphiphilic substance into the accessible monolayer leads to an increase in the monolayer area. As the area of two monolayers of the membrane must almost coincide, the opposing monolayer would have to stretch laterally, while the accessible monolayer would have to laterally compress [
30]. If the area introduced by the amphiphilic substance to its accessible monolayer is
Sp, then in equilibrium, neglecting the effects of thermal fluctuations of the membrane shape, the lipid of the accessible (e.g., outer) monolayer would be compressed by
Sp/2, while the lipid in the opposing (inner) monolayer would be stretched by
Sp/2; the overall area of the initially tensionless closed membrane would increase by
Sp/2. Such a change in the area of monolayers would lead to the generation of lateral pressure in the outer monolayers and equal (by absolute value) lateral tension in the inner monolayer. If thermal fluctuations of the membrane shape are taken into account, the result will be qualitatively the same (manuscript in preparation). In the case of the membrane that is symmetric with respect to the lipid composition (and spontaneous curvature) of its monolayers, for example, the GUV membrane, the asymmetry in lateral pressure/tension arising upon the addition of gA to the GUV exterior would increase both the average lifetime (
Figure 3) and the equilibrium constant (
Figure 4) by about 1.5–1.8 times if the lateral pressure/tension are in the order of ±3 mN/m. This effect is amplified up to >3.5 times when the spontaneous curvature of the outer monolayer is more positive than the spontaneous curvature of the inner monolayer (
Figure 3 and
Figure 4); this situation is characteristic of plasma membranes of mammalian cells [
24,
25,
26].
To conclude, we considered the elastic energy of deformations induced by gA monomers, dimers, and coaxial pairs in the membranes asymmetric with respect to spontaneous curvature and lateral tension of lipid monolayers. Both types of asymmetry are predicted to contribute to the average lifetime of gA channels and the monomer–dimer equilibrium constant. For the asymmetry expected to arise in the plasma membranes of mammalian cells upon the addition of gA or its derivatives to the cell exterior, our model predicts a manifold increase in the average lifetime and equilibrium constant.