Butyrylcarnitine Elevation in Newborn Screening: Reducing False Positives and Distinguishing between Two Rare Diseases through the Evaluation of New Ratios
Abstract
:1. Introduction
2. Materials and Methods
3. Results
3.1. Newborn Screening Results
3.2. SCADD Results
3.3. IBCDD Results
3.4. SCADD Versus IBCDD Results
3.5. Cut-Off Settings
3.6. Identification of New Patients
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
ANOVA | Analysis of variance |
C4 | Butyryl/isobutyrylcarnitine |
C0 | Free carnitine |
C5 | Isovalerylcarnitine |
C5DC\C6OH | Glutarylcarnitine\3-hydroxy-hexanoylcarnitine |
C6 | Hexanoylcarnitine |
C8 | Octanoylcarnitine |
C14:1 | Tetradecenoylcarnitine |
C16:1 | Hexadecenoylcarnitine |
FODs | Fatty-acid oxidation disorders |
FP | False positive |
FPR | False positive rate |
HPLC-UHPLC-MS | High-performance liquid chromatography–ultra-high-performance liquid chromatography–mass spectrometry |
IBDD | IsobutyrylCoA dehydrogenase deficiency |
IMDs | Inherited metabolic disorders |
NGS | Next-generation sequencing |
PPV | Predictive positive value |
SCADD | Short-chain acylCoA dehydrogenase deficiency |
SCADD-HH | Short-chain acylCoA dehydrogenase deficiency—patient homozygous for the Common variant c.625G>A |
FPs | False positives |
SCADD-CH | Short-chain acylCoA dehydrogenase deficiency—patient compound heterozygous for the common variant c.625G>A and another mutation |
SCADD-HHC | Short-chain acylCoA dehydrogenase deficiency—patient homozygous for the common variant c.625G>A and heterozygous for another mutation |
STT | Second-tier test |
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Patient | Disease | C4 (µM) First Test (Cut-Off 0.62 µM) | C4 (µM) Recall (Cut-Off 0.35 µM) | Gene | Mutation |
---|---|---|---|---|---|
1 | SCADD-HH | 1.22 | 0.17 | ACADS | c.625G>A homozygous |
2 | SCADD-HH | 1.65 | 0.30 | ACADS | c.625G>A homozygous |
3 | SCADD-HH | 0.81 | 0.20 | ACADS | c.625G>A homozygous |
4 | SCADD-HH | 0.90 | 0.27 | ACADS | c.625G>A homozygous |
5 | SCADD-HH | 0.89 | 0.17 | ACADS | c.625G>A homozygous |
6 | SCADD-HH | 0.94 | 0.37 | ACADS | c.625G>A homozygous |
7 | SCADD-HH | 0.73 | 0.36 | ACADS | c.625G>A homozygous |
8 | SCADD-HH | 0.90 | 0.27 | ACADS | c.625G>A homozygous |
9 | SCADD-HH | 1.06 | 0.39 | ACADS | c.625G>A homozygous |
1 | SCADD-CH | 1.08 | 0.52 | ACADS | c.625G>A heterozygous c.320G>A heterozygous |
2 | SCADD-CH | 1.10 | 0.56 | ACADS | c.625G>A heterozygous c.889C>T heterozygous |
3 | SCADD-CH | 0.97 | 0.42 | ACADS | c.625G>A heterozygous c.527dup heterozygous |
4 | SCADD-CH | 0.36 | 0.36 | ACADS | c.625G>A heterozygous c.310_312del heterozygous |
5 | SCADD-CH | 1.10 | 0.42 | ACADS | c.625G>A heterozygous c.988C > A heterozygous |
6 | SCADD-CH | 1.04 | 0.60 | ACADS | c.625G>A heterozygous c.814C>T heterozygous |
7 | SCADD-CH | 0.85 | 0.42 | ACADS | c.625G>A heterozygous c.268G>A heterozygous |
1 | SCADD-HHC | 0.83 | 0.38 | ACADS | c.625G>A homozygous c.1147C>T heterozygous |
2 | SCADD-HHC | 0.99 | 0.75 | ACADS | c.625G>A homozygous c.1147C>T heterozygous |
3 | SCADD-HHC | 0.95 | 0.40 | ACADS | c.625G>A homozygous c.1147C>T heterozygous |
4 | SCADD-HHC | 1.03 | 0.44 | ACADS | c.625G>A homozygous c.136C>T heterozygous |
5 | SCADD-HHC | 0.94 | 0.31 | ACADS | c.625G>A homozygous c.366_367delC>T heterozygous |
6 | SCADD-HHC | 0.95 | 0.51 | ACADS | c.625G>A homozygous c.1147C>T heterozygous |
7 | SCADD-HHC | 0.82 | 0.54 | ACADS | c.625G>A homozygous c.1147C>T heterozygous |
8 | SCADD-HHC | 0.82 | 0.49 | ACADS | c.625G>A homozygous c.253C>T heterozygous |
9 | SCADD-HHC | 1.13 | 0.57 | ACADS | c.625G>A homozygous c.268G>A heterozygous |
10 | SCADD-HHC | 1.27 | 0.54 | ACADS | c.625G>A homozygous c.988C>T heterozygous |
1 | IBDD | 1.42 | 0.71 | ACAD8 | c.958G>A heterozygous c.1129G>A heterozygous |
2 | IBDD | 1.90 | 0.62 | ACAD8 | c.512C > G homozygous |
3 | IBDD | 0.94 | 0.59 | ACAD8 | c.512C > G homozygous |
4 | IBDD | 0.73 | 0.46 | ACAD8 | c.259G>A heterozygous c.512C > G heterozygous |
Marker | Mean (μM) | Standard Deviation (μM) | p-Value | χ2 | ε2 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
SCADD (n = 26) | IBDD (n = 4) | FPs (n = 91) | SCADD (n = 26) | IBDD (n = 4) | FPs (n = 91) | SCADD-FP | IBDD-FPs | SCADD-IBDD | |||
C4 | 0.974 | 1.25 | 0.979 | 0.224 | 0.522 | 0.177 | 0.9933 | 0.0299 | 0.0368 | 0.738 | 0.006 |
C4/C0 | 0.0505 | 0.0796 | 0.0461 | 0.0214 | 0.0220 | 0.0151 | 0.4663 | 0.00048 | 0.0048 | 7.98 | 0.067 |
C4/C5 | 7.55 | 9.82 | 6.14 | 2.76 | 2.36 | 2.10 | 0.0016 | 0.0052 | 0.1524 | 15.5 | 0.129 |
C4/C5DC\C6OH | 9.56 | 14.3 | 8.50 | 2.00 | 4.26 | 2.25 | 0.0957 | 5.32 × 10−6 | 0.00044 | 10.2 | 0.085 |
C4/C6 | 16.1 | 27.6 | 13.4 | 4.13 | 4.41 | 4.24 | 0.0187 | 1.14 × 10–13 | 1.33 × 10−8 | 25.5 | 0.213 |
C4/C8 | 16.9 | 33.3 | 15.5 | 5.97 | 11.5 | 5.59 | 0.5308 | 1.00 × 10−7 | 2.78 × 10−6 | 10.4 | 0.086 |
C4/C14:1 | 8.22 | 14.9 | 7.54 | 3.07 | 3.67 | 3.04 | 0.5766 | 2.26 × 10−5 | 0.00028 | 10.4 | 0.087 |
C4/C16:1 | 4.14 | 6.67 | 3.81 | 1.41 | 1.16 | 1.53 | 0.5804 | 0.00086 | 0.0061 | 11.2 | 0.093 |
Marker | Mean (μM) | Standard Deviation (μM) | p-Value | χ2 | ε2 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I Test | SCADD-HH (n = 9) | SCADD-CH (n = 7) | SCADD-HHC (n = 10) | IBDD (n = 4) | FPs (n = 91) | SCADD-HH (n = 9) | SCADD-CH (n = 7) | SCADD-HHC (n = 10) | IBDD (n = 4) | FPs (n = 91) | SCADD-HH-FPs | SCADD-CH-FPs | SCADD-HHC-FPs | IBDD-FP | SCADD-HH-IBDD | SCADD-CH-IBDD | SCADD-HHC-IBDD | ||
C4 | 1.01 | 0.929 | 0.973 | 1.25 | 0.979 | 0.278 | 0.266 | 0.144 | 0.522 | 0.177 | 0.9918 | 0.9699 | 0.9999 | 0.0844 | 0.3131 | 0.1018 | 0.1644 | 0.926 | 0.008 |
C4/C0 | 0.0389 | 0.0502 | 0.0611 | 0.0796 | 0.0461 | 0.00574 | 0.0242 | 0.0244 | 0.0220 | 0.0151 | 0.7238 | 0.9674 | 0.0522 | 0.00105 | 0.00066 | 0.0399 | 0.3221 | 15.0 | 0.125 |
C4/C5 | 6.19 | 7.93 | 8.51 | 9.82 | 6.14 | 1.75 | 4.22 | 1.90 | 2.36 | 2.10 | 1.000 | 0.2486 | 0.0154 | 0.0136 | 0.0586 | 0.6602 | 0.8575 | 20.1 | 0.168 |
C4/C5DC\C6OH | 8.47 | 10.1 | 10.2 | 14.3 | 8.50 | 1.44 | 2.54 | 1.78 | 4.26 | 2.25 | 1.000 | 0.3926 | 0.1790 | 1.60 × 10−5 | 0.00032 | 0.0263 | 0.0194 | 13.0 | 0.109 |
C4/C6 | 13.5 | 18.9 | 19.7 | 28.0 | 13.4 | 3.20 | 6.50 | 4.25 | 6.08 | 4.24 | 1.000 | 0.0144 | 0.00026 | 1.61 × 10−8 | 2.11 × 10−6 | 0.0100 | 0.0150 | 27.7 | 0.231 |
C4/C8 | 14.8 | 17.8 | 18.2 | 33.3 | 15.5 | 3.31 | 6.84 | 7.17 | 11.48 | 5.59 | 0.9972 | 0.8618 | 0.6576 | 3.56 × 10−7 | 8.31 × 10−6 | 0.0005 | 0.0003 | 11.2 | 0.0937 |
C4/C14:1 | 7.24 | 8.85 | 8.66 | 14.86 | 7.54 | 3.01 | 3.98 | 2.46 | 3.67 | 3.04 | 0.9987 | 0.8111 | 0.8068 | 7.84 × 10−5 | 0.00064 | 0.0187 | 0.00769 | 11.8 | 0.0986 |
C4/C16:1 | 3.53 | 4.70 | 4.30 | 6.67 | 3.81 | 0.914 | 2.11 | 1.07 | 1.16 | 1.53 | 0.9834 | 0.5541 | 0.8585 | 0.00264 | 0.00606 | 0.2280 | 0.0649 | 13.5 | 0.112 |
Recall | |||||||||||||||||||
C4 | 0.278 | 0.471 | 0.493 | 0.595 | 0.300 | 0.0850 | 0.0886 | 0.122 | 0.103 | 0.0983 | 0.9679 | 0.00022 | 4.76 × 10−7 | 5.20 × 10−7 | 4.96 × 10−6 | 0.2782 | 0.4146 | 37.5 | 0.312 |
C4/C0 | 0.00950 | 0.0185 | 0.0221 | 0.0247 | 0.0118 | 0.00246 | 0.00800 | 0.0127 | 0.00601 | 0.00408 | 0.7553 | 0.01936 | 1.10 × 10−6 | 0.00011 | 0.00010 | 0.3785 | 0.9347 | 28.8 | 0.240 |
C4/C5 | 1.37 | 2.59 | 2.84 | 3.69 | 1.66 | 0.435 | 2.10 | 1.41 | 2.56 | 0.812 | 0.9285 | 0.1627 | 0.00796 | 0.00198 | 0.00284 | 0.4414 | 0.6403 | 16.5 | 0.137 |
C4/C5DC\C6OH | 6.22 | 8.05 | 9.24 | 11.8 | 5.69 | 1.90 | 2.89 | 3.78 | 4.01 | 1.95 | 0.9629 | 0.06651 | 6.82 × 10−5 | 6.63 × 10−6 | 0.00078 | 0.07313 | 0.3286 | 22.9 | 0.191 |
C4/C6 | 7.14 | 10.4 | 14.8 | 21.5 | 7.90 | 1.78 | 2.55 | 5.01 | 10.5 | 2.39 | 0.9576 | 0.2715 | 9.32 × 10−9 | 8.21 × 10−13 | 7.34 × 10−11 | 1.05 × 10−6 | 0.00446 | 35.0 | 0.292 |
C4/C8 | 6.83 | 9.99 | 13.7 | 19.3 | 7.64 | 2.77 | 2.88 | 3.83 | 6.44 | 2.62 | 0.9309 | 0.2458 | 4.11 × 10−8 | 2.65 × 10−10 | 1.00 × 10−9 | 1.38 × 10−5 | 0.01417 | 30.3 | 0.250 |
C4/C14:1 | 6.45 | 10.6 | 13.8 | 18.6 | 8.23 | 1.76 | 3.50 | 3.98 | 4.30 | 3.35 | 0.5513 | 0.3570 | 1.91 × 10−5 | 1.74 × 10−7 | 1.95 × 10−7 | 0.00222 | 0.1201 | 30.0 | 0.250 |
C4/C16:1 | 5.50 | 9.47 | 10.9 | 17.8 | 7.89 | 1.88 | 5.14 | 4.25 | 4.94 | 4.23 | 0.4802 | 0.8703 | 0.2126 | 0.00010 | 3.37 × 10−5 | 0.01676 | 0.0478 | 18.1 | 0.151 |
Patient | Disease | Ratio—First Test | ||||||
---|---|---|---|---|---|---|---|---|
C4/C0 (Cut-Off 0.0349) | C4/C5 (Cut-Off 6.62) | C4/C5DC\C6OH (Cut-Off 7.34) | C4/C6 (Cut-Off 12.9) | C4/C8 (Cut-Off 14.3) | C4/C14:1 (Cut-Off 5.82) | C4/C16:1 (Cut-Off 2.56) | ||
1 | SCADD-HH | 0.0462 | 3.48 | 9.38 | 12.2 | 8.73 | 3.05 | 3.21 |
2 | SCADD-HH | 0.0362 | 9.16 | 8.25 | 20.6 | 12.6 | 13.7 | 3.05 |
3 | SCADD-HH | 0.0336 | 6.23 | 8.10 | 11.5 | 16.2 | 7.36 | 2.38 |
4 | SCADD-HH | 0.0315 | 6.92 | 6.42 | 10.0 | 15.0 | 7.50 | 3.91 |
5 | SCADD-HH | 0.0441 | 8.09 | 8.90 | 14.8 | 17.8 | 8.09 | 3.29 |
6 | SCADD-HH | 0.0470 | 5.52 | 8.54 | 15.6 | 18.8 | 5.22 | 4.08 |
7 | SCADD-HH | 0.0384 | 6.08 | 10.4 | 12.1 | 14.6 | 8.11 | 4.05 |
8 | SCADD-HH | 0.0396 | 4.28 | 10.0 | 11.2 | 18.0 | 7.50 | 5.29 |
9 | SCADD-HH | 0.0337 | 5.88 | 6.23 | 13.2 | 11.7 | 4.60 | 2.46 |
1 | SCADD-CH | 0.0279 | 8.30 | 7.20 | 21.6 | 15.4 | 9.81 | 2.76 |
2 | SCADD-CH | 0.0724 | 15.7 | 12.2 | 22.0 | 18.3 | 10.0 | 4.40 |
3 | SCADD-CH | 0.0516 | 7.46 | 8.08 | 12.1 | 12.1 | 3.73 | 3.12 |
4 | SCADD-CH | 0.0120 | 1.89 | 7.20 | 9.00 | 12.0 | 5.14 | 9.00 |
5 | SCADD-CH | 0.0786 | 8.46 | 12.2 | 18.3 | 12.2 | 6.11 | 3.92 |
6 | SCADD-CH | 0.0654 | 8.66 | 13.0 | 20.8 | 26.0 | 13.0 | 4.00 |
7 | SCADD-CH | 0.0436 | 5.00 | 10.6 | 28.3 | 28.3 | 14.1 | 5.66 |
1 | SCADD-HHC | 0.0546 | 9.22 | 11.8 | 27.6 | 27.6 | 11.8 | 5.18 |
2 | SCADD-HHC | 0.0723 | 9.00 | 11.0 | 19.8 | 16.5 | 11.0 | 5.50 |
3 | SCADD-HHC | 0.0432 | 9.50 | 9.50 | 19.0 | 11.8 | 7.30 | 3.39 |
4 | SCADD-HHC | 0.0200 | 9.36 | 11.4 | 20.6 | 12.8 | 6.86 | 3.67 |
5 | SCADD-HHC | 0.0573 | 7.83 | 9.40 | 18.8 | 10.4 | 5.22 | 2.93 |
6 | SCADD-HHC | 0.0931 | 7.91 | 7.91 | 15.8 | 19.0 | 5.93 | 3.51 |
7 | SCADD-HHC | 0.0453 | 7.45 | 11.7 | 20.5 | 20.5 | 11.7 | 3.03 |
8 | SCADD-HHC | 0.0582 | 5.85 | 11.7 | 13.6 | 9.11 | 7.45 | 5.12 |
9 | SCADD-HHC | 0.1046 | 12.5 | 6.64 | 16.1 | 28.2 | 8.69 | 5.13 |
10 | SCADD-HHC | 0.0626 | 6.35 | 10.5 | 25.4 | 25.4 | 10.5 | 5.52 |
1 | IBDD | 0.1044 | 12.9 | 17.7 | 28.4 | 47.3 | 20.2 | 7.88 |
2 | IBDD | 0.0888 | 10.0 | 15.8 | 23.7 | 38.0 | 13.5 | 6.33 |
3 | IBDD | 0.0718 | 7.23 | 15.6 | 23.5 | 23.5 | 13.4 | 7.23 |
4 | IBDD | 0.0533 | 9.12 | 8.11 | 36.5 | 24.3 | 12.1 | 5.21 |
Patient | Disease Mutation | Primary Marker | Ratio—First Test | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
C4 First Test (Cut-Off 0.62 μM) | C4 Recall (Cut-Off 0.35 μM) | C4/C0 (Cut-Off 0.0349) | C4/C5 (Cut-Off 6.62) | C4/C5DC\C6OH (Cut-Off 7.34) | C4/C6 (Cut-Off 12.9) | C4/C8 (Cut-Off 14.3) | C4/C14:1 (Cut-Off 5.82) | C4/C16:1 (Cut-Off 2.56) | |||
1 | SCADD-HH | c.625G>A (homozygous) | 0.943 | 0.361 | 0.0281 | 6.27 | 6.28 | 5.86 | 5.88 | 2.47 | 1.68 |
2 | SCADD-HHC | c.625G>A (homozygous) c.366_367del (heterozygous) | 0.862 | 0.522 | 0.0422 | 7.17 | 10.7 | 21.5 | 17.2 | 8.60 | 4.77 |
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Messina, M.; Arena, A.; Iacobacci, R.; La Spina, L.; Meli, C.; Raudino, F.; Ruggieri, M. Butyrylcarnitine Elevation in Newborn Screening: Reducing False Positives and Distinguishing between Two Rare Diseases through the Evaluation of New Ratios. Biomedicines 2023, 11, 3247. https://doi.org/10.3390/biomedicines11123247
Messina M, Arena A, Iacobacci R, La Spina L, Meli C, Raudino F, Ruggieri M. Butyrylcarnitine Elevation in Newborn Screening: Reducing False Positives and Distinguishing between Two Rare Diseases through the Evaluation of New Ratios. Biomedicines. 2023; 11(12):3247. https://doi.org/10.3390/biomedicines11123247
Chicago/Turabian StyleMessina, MariaAnna, Alessia Arena, Riccardo Iacobacci, Luisa La Spina, Concetta Meli, Federica Raudino, and Martino Ruggieri. 2023. "Butyrylcarnitine Elevation in Newborn Screening: Reducing False Positives and Distinguishing between Two Rare Diseases through the Evaluation of New Ratios" Biomedicines 11, no. 12: 3247. https://doi.org/10.3390/biomedicines11123247
APA StyleMessina, M., Arena, A., Iacobacci, R., La Spina, L., Meli, C., Raudino, F., & Ruggieri, M. (2023). Butyrylcarnitine Elevation in Newborn Screening: Reducing False Positives and Distinguishing between Two Rare Diseases through the Evaluation of New Ratios. Biomedicines, 11(12), 3247. https://doi.org/10.3390/biomedicines11123247