Identification of miR-29c-3p as a Robust Normalizer for Urine microRNA Studies in Bladder Cancer
Abstract
:1. Introduction
2. Experimental Section
2.1. Study Subjects
2.2. Urine Collection
2.3. RNA Isolation and cDNA Synthesis from Urine
2.4. miRNAs Quantification
2.5. Selection of Candidate miRNA Normalizers and Analysis of Their Stability
2.6. Statistical Analysis
3. Results
3.1. Clinical Characteristics of the Study Subjects
3.2. Quality Internal Control with Synthetic Spike-in RNAs
3.3. Selection of Candidate miRNA Normalizers and Analysis of Their Stability
3.4. Differences in Expression Levels of Candidate miRNA Normalizers between BC Patients and Controls
3.5. Effect of Different Normalization Strategies on the Relative Quantification of a miRNA Closely Related with BC
3.6. Validation of the Performance of miR-29c-3p as Normalizer in an Independent Cohort of BC Patients and Controls
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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BC Patients | Controls | |||
---|---|---|---|---|
Screening (N = 35) | Validation (N = 153) | Screening (N = 15) | Validation (N = 57) | |
Age, y | 67 (61–74) | 69 (63–75) | 64 (51–76) | 64 (56–68) |
Male sex, N (%) | 32 (91.43%) | 129 (84.31%) | 12 (80.00%) | 43 (75.44%) |
Urine creatinine, mg/dL | 76.5 (37.4–123.3) | 77.4 (51.9–118.9) | 78.5 (49.0–100.2) | 98.2 (69.4–161.6) |
Tumor Stage and Grade, N (%) | ||||
TaG1 | 10 (28.57%) | 33 (21.57%) | - | - |
TaG3 | 8 (22.86%) | 13 (8.50%) | - | - |
T1G3 | 5 (14.29%) | 29 (18.95%) | - | - |
TaG2 | - | 54 (35.29%) | - | - |
T1G2 | - | 9 (5.88%) | - | - |
T2G2/T2G3/T3G3 | 12 (34.29%) | 15 (9.80%) | - | - |
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Oto, J.; Plana, E.; Fernández-Pardo, Á.; Cana, F.; Martínez-Sarmiento, M.; Vera-Donoso, C.D.; España, F.; Medina, P. Identification of miR-29c-3p as a Robust Normalizer for Urine microRNA Studies in Bladder Cancer. Biomedicines 2020, 8, 447. https://doi.org/10.3390/biomedicines8110447
Oto J, Plana E, Fernández-Pardo Á, Cana F, Martínez-Sarmiento M, Vera-Donoso CD, España F, Medina P. Identification of miR-29c-3p as a Robust Normalizer for Urine microRNA Studies in Bladder Cancer. Biomedicines. 2020; 8(11):447. https://doi.org/10.3390/biomedicines8110447
Chicago/Turabian StyleOto, Julia, Emma Plana, Álvaro Fernández-Pardo, Fernando Cana, Manuel Martínez-Sarmiento, César D. Vera-Donoso, Francisco España, and Pilar Medina. 2020. "Identification of miR-29c-3p as a Robust Normalizer for Urine microRNA Studies in Bladder Cancer" Biomedicines 8, no. 11: 447. https://doi.org/10.3390/biomedicines8110447
APA StyleOto, J., Plana, E., Fernández-Pardo, Á., Cana, F., Martínez-Sarmiento, M., Vera-Donoso, C. D., España, F., & Medina, P. (2020). Identification of miR-29c-3p as a Robust Normalizer for Urine microRNA Studies in Bladder Cancer. Biomedicines, 8(11), 447. https://doi.org/10.3390/biomedicines8110447