First Confirmed Description of Acremonium egyptiacum from Greece and Molecular Identification of Acremonium and Acremonium-like Clinical Isolates
Abstract
:1. Introduction
2. Materials and Methods
2.1. Strains
2.2. Molecular Identification and Genotyping
2.3. Antifungal Susceptibility
2.4. Statistics
3. Results
3.1. Molecular Identification
3.2. A. egyptiacum ITS Barcode Types
3.3. Antifungal Susceptibility
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Domsch, K.H.; Gams, W.; Anderson, T.H. (Eds.) Acremonium. In Compendium of Soil Fungi; IHW-Verlag: Eching, Germany, 2007; pp. 30–38. ISBN 9783930167692. [Google Scholar]
- Perdomo, H.; Sutton, D.A.; García, D.; Fothergill, A.W.; Cano, J.; Gené, J.; Summerbell, R.C.; Rinaldi, M.G.; Guarro, J. Spectrum of clinically relevant Acremonium species in the United States. J. Clin. Microbiol. 2011, 49, 243–256. [Google Scholar] [CrossRef] [PubMed]
- Summerbell, R.C.; Gueidan, C.; Guarro, J.; Eskalen, A.; Crous, P.W.; Gupta, A.K.; Gené, J.; Cano-Lira, J.F.; van Iperen, A.; Starink, M.; et al. The Protean Acremonium. A. sclerotigenum/egyptiacum: Revision, Food Contaminant, and Human Disease. Microorganisms 2018, 6, 88. [Google Scholar] [CrossRef] [PubMed]
- Frenkel, M.; Serhan, H.; Blum, S.E.; Fleker, M.; Sionov, E.; Amit, S.; Gazit, Z.; Gefen-Halevi, S.; Segal, E. What Is Hiding in the Israeli Mediterranean Seawater and Beach Sand. J. Fungi 2022, 8, 950. [Google Scholar] [CrossRef] [PubMed]
- Guarro, J.; Gams, W.; Pujol, I.; Gené, J. Acremonium species: New emerging fungal opportunists-in vitro antifungal susceptibilities and review. Clin. Infect. Dis. 1997, 25, 1222–1229. [Google Scholar] [CrossRef] [PubMed]
- Pérez-Cantero, A.; Guarro, J. Sarocladium and Acremonium infections: New faces of an old opportunistic fungus. Mycoses 2020, 63, 1203–1214. [Google Scholar] [CrossRef] [PubMed]
- Summerbell, R. Aspergillus, Fusarium, Sporothrix, Piedraia, and Their Relatives. In Dexter Howard: Pathogenic Fungi in Humans and Animals; Marcel Dekker, Inc.: New York, NY, USA, 2002; pp. 237–499. [Google Scholar]
- Summerbel, R.C.; Gueidan, C.; Schroers, H.J.; de Hoog, G.S.; Starink, M.; Arocha Rosete, Y.; Guarro, J.; Scott, J.A. Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium. Stud. Mycol. 2011, 68, 139–162. [Google Scholar] [CrossRef] [PubMed]
- Hou, L.W.; Giraldo, A.; Groenewald, J.Z.; Rämä, T.; Summerbell, R.C.; Huang, G.Z.; Cai, L.; Crous, P.W. Redisposition of acremonium-like fungi in Hypocreales. Stud. Mycol. 2023, 105, 23–203. [Google Scholar] [CrossRef] [PubMed]
- Miyakis, S.; Velegraki, A.; Delikou, S.; Parcharidou, A.; Papadakis, V.; Kitra, V.; Papadatos, I.; Polychronopoulou, S. Invasive Acremonium strictum infection in a bone marrow transplant recipient. Pediatr. Infect. Dis. J. 2006, 25, 273–275. [Google Scholar] [CrossRef] [PubMed]
- CLSI M38; Reference Method for Broth Dilution Antifungal Susceptibility Testing of Filamentous Fungi. Approved Standard, 3rd Edition. Clinical and Laboratory Standards Institute: Wayne, PA, USA, 2017.
- Velegraki, A.; Kambouris, M.; Skiniotis, G.; Savala, M.; Mitroussia-Ziouva, A.; Legakis, N.J. Identification of medically significant fungal genera with PCR followed by restriction enzyme analysis. FEMS Immunol. Med. Microbiol. 1999, 23, 303–312. [Google Scholar] [CrossRef] [PubMed]
- White, T.J.; Bruns, T.; Lee, S.; Taylor, J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications; Innis, M.A., Gelfand, D.H., Sninsky, J.J., White, T.J., Eds.; Academic Press: New York, NY, USA, 1990; pp. 315–322. [Google Scholar]
- Thompson, J.D.; Higgins, D.G.; Gibson, T.J. CLUSTAL W: Improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22, 4673–4680. [Google Scholar] [CrossRef] [PubMed]
- Kimura, M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16, 111–120. [Google Scholar] [CrossRef] [PubMed]
- Yao, L.; Wang, H.; Wan, Z.; Li, R.; Yu, J. The High Diversity and Variable Susceptibility of Clinically Relevant Acremonium-Like Species in China. Mycopathologia 2019, 184, 759–773. [Google Scholar] [CrossRef] [PubMed]
- Bloch, B.; Vischer, A. Die Kladiose, eine durch einen bisher nicht bekannten Pilz (Mastigocladium) hervorgerufene Dermatomykose. Arch. Derm. Syphil. 1911, 108, 477–512. [Google Scholar] [CrossRef]
- Ioakimidou, A.; Vyzantiadis, T.A.; Sakellari, I.; Arabatzis, M.; Smias, C.; Douka, V.; Velegraki, A.; Anagnostopoulos, A.; Malissiovas, N. An unusual cluster of Acremonium kiliense fungaemias in a haematopoietic cell transplantation unit. Diagn. Microbiol. Infect. Dis. 2013, 75, 313–316. [Google Scholar] [CrossRef] [PubMed]
- Bibashi, E.; Kokolina, E.; Sigler, L.; Sofianou, D.; Tsakiris, D.; Visvardis, G.; Papadimitriou, M.; Memmos, D. Three cases of uncommon fungal peritonitis in patients undergoing peritoneal dialysis. Perit. Dial. Int. 2002, 22, 523–525. [Google Scholar] [CrossRef] [PubMed]
- Cruz Choappa, R.; Vieille Oyarzo, P.; Noguera Gahona, M.; Cogliati, M. Onychomycosis of Hand and Foot due to Acremonium egyptiacum. Mycopathologia 2024, 189, 11. [Google Scholar] [CrossRef] [PubMed]
- Guitard, J.; Degulys, A.; Buot, G.; Aline-Fardin, A.; Dannaoui, E.; Rio, B.; Marie, J.P.; Lapusan, S.; Hennequin, C. Acremonium sclerotigenum-Acremonium egyptiacum: A multi-resistant fungal pathogen complicating the course of aplastic anaemia. Microbiol. Infect. 2014, 20, O30–O32. [Google Scholar] [CrossRef] [PubMed]
Strain Identifier (a UOA/HCPF Number) | Origin | Year of Isolation | GenBank Accession (ITS) | ITS Barcode Types b | MIC (μg/mL) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AMB c | FLU | ITZ | LAN | LUL | POS | VOR | AML | TER | GRI | |||||
9038A | Toenails | 2010 | GQ376095 | 3 | 4 | 1 | 8 | 1 | 1 | 8 | 8 | 32 | 8 | 8 |
12274 | Toenails | 2010 | OR485204 | 1 | 16 | 4 | 32 | 1 | 1 | 32 | 8 | 32 | 8 | 8 |
12588 | Toenails | 2010 | QR485205 | 3 | 8 | 1 | 16 | 1 | 0.5 | 4 | 8 | 32 | 16 | 16 |
13213 | Toenails | 2011 | OR485206 | 3 | 16 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 |
13332 | Blood culture | 2011 | QR485207 | 3 | 16 | 1 | 16 | 1 | 1 | 16 | 32 | 32 | 32 | 16 |
13355 | Toenails | 2011 | OR485208 | 2 | 16 | 1 | 32 | 1 | 1 | 8 | 16 | 16 | 32 | 32 |
13842 | Plantar skin biopsy | 2011 | OR485209 | 2 | 8 | 1 | 16 | 1 | 2 | 16 | 16 | 16 | 32 | 16 |
13999 | Toenails | 2011 | QR485210 | 3 | 16 | 1 | 32 | 1 | 2 | 32 | 32 | 32 | 32 | 32 |
14839 | Toenails | 2014 | KP132613 | 3 | 16 | 1 | 32 | 2 | 1 | 16 | 32 | 32 | 4 | 16 |
15458 | Toenails | 2014 | OR485211 | 3 | 16 | 2 | 32 | 2 | 1 | 32 | 32 | 32 | 8 | 32 |
15544 | Toenails | 2014 | OR485212 | 2 | 16 | 1 | 32 | 1 | 1 | 8 | 32 | 32 | 16 | 32 |
15617 | Toenails | 2015 | QR485213 | 3 | 16 | 2 | 32 | 2 | 2 | 32 | 32 | 32 | 32 | 32 |
15663 | Toenails | 2015 | OR485214 | 3 | 16 | 32 | 32 | 8 | 2 | 32 | 32 | 32 | 32 | 32 |
AV08 | Toenails | 2012 | OR485215 | 2 | 16 | 1 | 32 | 2 | 0.5 | 32 | 32 | 32 | 32 | 32 |
AV8549 | Toenails | 2015 | QR485116 | 3 | 8 | 0.25 | 2 | 0.25 | 1 | 0.25 | 0.5 | 32 | 32 | 8 |
AV8673 | Toenails | 2015 | OR485217 | 3 | 8 | 2 | 32 | 1 | 1 | 8 | 32 | 8 | 32 | 32 |
AV8740 | Toenails | 2020 | OR485218 | 3 | 8 | 1 | 32 | 1 | 1 | 16 | 16 | 32 | 32 | 32 |
AV8908 | Toenails | 2021 | QR485219 | 3 | 16 | 2 | 16 | 0.5 | 2 | 32 | 32 | 32 | 32 | 32 |
Strain Identifier (a UOA/HCPF Number) | Origin | Year of Isolation | GenBank Accession (ITS) | Identification | MIC (μg/mL) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AMB b | FLU | ITZ | LAN | LUL | POS | VOR | AML | TER | GRI | |||||
6229 | Toenails | 2011 | PP971132 | Gliomastix polychroma | 16 | 32 | 32 | 32 | 1 | 32 | 32 | 32 | 32 | 32 |
11985 | Toenails | 2011 | KC254086 | Sarocladium kiliense | 16 | 4 | 32 | 2 | 1 | 32 | 2 | 32 | 32 | 8 |
11624 | Toenails | 2011 | KC254085 | Sarocladium kiliense | 16 | 32 | 32 | 1 | 2 | 32 | 32 | 32 | 32 | 32 |
11447 | Toenails | 2011 | KC254084 | Sarocladium kiliense | 16 | 2 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 |
12768A | Toenails | 2011 | KC254087 | Sarocladium kiliense | 16 | 1 | 32 | 1 | 1 | 8 | 16 | 32 | 32 | 32 |
13246 | Toenails | 2011 | PP971127 | Proxiovicillium blochii | 16 | 1 | 32 | 1 | 2 | 32 | 4 | 32 | 32 | 32 |
13447 | External otitis | 2011 | PP971123 | Sarocladium kiliense | 16 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 |
13520 | Human skin | 2011 | PP971124 | Sarocladium kiliense | 16 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 | 32 |
15442 | Toenails | 2014 | PP971131 | Emericellopsis sp. | 16 | 4 | 16 | 2 | 1 | 32 | 16 | 32 | 8 | 32 |
15471 | Toenails | 2014 | PP971125 | Sarocladium kiliense | 8 | 2 | 16 | 1 | 1 | 8 | 32 | 32 | 16 | 32 |
15482 | Toenails | 2014 | PP971126 | Sarocladium terricola | 8 | 1 | 16 | 1 | 0.5 | 8 | 4 | 32 | 16 | 16 |
15618 | Toenails | 2014 | PP979053 | Sarocladium kiliense | 16 | 32 | 32 | 1 | 1 | 32 | 32 | 32 | 32 | 32 |
15589 | Toenails | 2014 | PP971129 | Stanjemonium dichromosporum | 8 | 1 | 32 | 1 | 2 | 16 | 32 | 32 | 32 | 16 |
AB1112 | Toenails | 2021 | KP132614 | Sarocladium zeae | 16 | 1 | 32 | 2 | 0.5 | 32 | 32 | 32 | 32 | 32 |
AV1768 | Toenails | 2012 | PP971130 | Emericellopsis sp. | 16 | 1 | 32 | 1 | 0.25 | 32 | 8 | 32 | 32 | 32 |
AV7579 | Toenails | 2014 | PP971128 | Acremonium charticola | 8 | 1 | 16 | 1 | 1 | 8 | 8 | 32 | 32 | 16 |
AMB a | FLU | ITZ | LAN | LUL | POS | VOR | AML | TER | GRI | |
---|---|---|---|---|---|---|---|---|---|---|
MIC range | 4–16 | 0.25–32 | 2–32 | 0.25–32 | 0.5–32 | 0.25–32 | 0.5–32 | 8–32 | 4–32 | 8–32 |
GM | 12.21 | 1.71 | 21.77 | 1.41 | 1.36 | 13.7 | 17.95 | 27.43 | 20.95 | 21.77 |
MIC50/MIC90 | 16/16 | 1/4 | 32/32 | 1/2 | 1/2 | 8/32 | 32/32 | 32/32 | 32/32 | 32/32 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Arabatzis, M.; Abel, P.; Sotiriou, E.; Velegraki, A. First Confirmed Description of Acremonium egyptiacum from Greece and Molecular Identification of Acremonium and Acremonium-like Clinical Isolates. J. Fungi 2024, 10, 664. https://doi.org/10.3390/jof10090664
Arabatzis M, Abel P, Sotiriou E, Velegraki A. First Confirmed Description of Acremonium egyptiacum from Greece and Molecular Identification of Acremonium and Acremonium-like Clinical Isolates. Journal of Fungi. 2024; 10(9):664. https://doi.org/10.3390/jof10090664
Chicago/Turabian StyleArabatzis, Michael, Philoktitis Abel, Eleni Sotiriou, and Aristea Velegraki. 2024. "First Confirmed Description of Acremonium egyptiacum from Greece and Molecular Identification of Acremonium and Acremonium-like Clinical Isolates" Journal of Fungi 10, no. 9: 664. https://doi.org/10.3390/jof10090664
APA StyleArabatzis, M., Abel, P., Sotiriou, E., & Velegraki, A. (2024). First Confirmed Description of Acremonium egyptiacum from Greece and Molecular Identification of Acremonium and Acremonium-like Clinical Isolates. Journal of Fungi, 10(9), 664. https://doi.org/10.3390/jof10090664